Characterization and catabolic genes detection of three oil-degrading Rhodococcus spp.北大核心CSCD

Oil pollution is one of the major factors causing environmental deterioration. Bioremediation of oil contaminated environments by microorganisms attracts much research attention. This study aimed to screen efficient oil-degrading bacteria from oil contaminated soil and analyze their characteristics and catabolic genes. Oil-degrading bacteria were screened from oil contaminated soil in minimal medium containing crude oil and identified by morphological, physiological and biochemical characteristics and 16S rDNA sequence analysis. Their growth and degradation characteristics were studied with ultraviolet spectroscopy and GC-MS analysis. The surfactant production was studied by adopting culture method. The major oil-degrading related genes were detected by t he PCR a mplification. As a result, t hree oil-degrading bacteria strains named KB1, 2182 and JC3-47 were isolated from the oil contaminated soil samples. The strains could use crude oil as the sole carbon source to degrade oil with a degrading rate of 41.02%, 32.26% and 55.90%, respectively, when cultured in minimal medium containing crude oil for 3 days. The bacteria were identified to belong to genus Rhodococcus. With 100% similarity of 16S rDNA sequences of the three strains with known ones of Rhodococcus, KB1 was preliminarily identified as Rhodococcus erythropolis, 2182 as Rhodococcus equi, and JC3-47 as Rhodococcus qingshengii. They grew well at 10-50 °C, with the initial pH of 3-9 and the NaCl concentration of 0-5%. The optimal temperature for bacterial growth was 35 °C, 35 °C and 30 °C respectively. KB1 and 2182 could grow at pH 2 and 9.0% of NaCl. The bacteria grew well in broth containing different organic substrates as sole carbon source, such as n-dodecane, n-octadecane, benzene, methylbenzene, xylene and naphthaline. KB1 and JC3-47 could grow well in broth containing pyrene. GC-MS analysis revealed that the bacteria could effectively degrade medium- and long-chain alkane components in crude oil. The bacteria produced biosurfactants and decreased the surface tension of the culture broth. They also showed adhesion activities to n-hexadecane. The oil-degrading related genes such as alkane monooxygenase, aromatic-ring-hydroxylating dioxygenase and catechol dioxygenase genes were detected in all the three strains. Besides, biphenyl dioxygenase genes were detected in KB1 and 2182. The isolated Rhodococcus spp. strains could effectively degrade petroleum hydrocarbons with high adaptabilities to extreme environments such as high salt and low temperature. They are supposed to be applied broadly in the bioremediation of oil contaminated soil in such environments.     

A study of the heavy metal concentrations of the Singapore River

The concentrations of lead, cadmium, copper, zinc, iron, and mercury in the water, sediment and biota of the Singapore River were determined. The concentration of the various metals in water showed significant variation at different sampling times and there was enrichment of lead content. The spatial patterns of metal distribution in the sediment could be due to the different pollution sources such as exhaust emission from boats and other environmental variables such as clay content of sediment or tide level. In the biota, higher amounts of metals were found in species inhabiting the river bed while organisms of higher trophic level such as free-swimming fishes and crabs accumulated lower amounts. In general, the flesh of fishes and crabs had the least content of metals compared to other tissues. The Concentration of various metals in bivalve, Mytilopsis sallei, which were found extensively in the river did not reflect the pollution distribution.     

Dispersive liquid–liquid microextraction of cadmium(II) for preconcentration prior to flame atomic absorption spectrometric detection in water

A dispersive liquid–liquid microextraction procedure for cadmium(II) as its 2-(5-bromo-2-pyridylazo)-5-diethylamino-phenol chelate is presented. Carbon tetrachloride and methanol were used as extraction and dispersive solvents, respectively. After phase separation, the preconcentrated-separated cadmium(II) is determined by flame atomic absorption spectrometry with a microinjection technique. The factors which affected the extraction efficiency, i.e. the pH of the sample solution and the volumes of reagent and sample were investigated. The effects of some alkali, alkali earth, and transition metal ions, and of some anions on the recovery of cadmium were also studied. A preconcentration factor of 250 was obtained for a sample volume of 50?mL under optimum conditions. The method was validated by analysis of certified reference materials and applied to some water samples from Turkey.     

A modified method for determination of dehydrogenases activity of activated sludge

Examination of the different methods employed to detect dehydrogenases activity of activated sludge by reduction of triphenyl tetrazolium chloride (TTC) indicated the non‐uniformity of the procedures. A modified method is, therefore, developed which consists of incubation of a dilute sonicated sample of mixed liquor suspended solids (MLSS) of activated sludge with TTC in the presence of sodium sulfite, phosphate buffer and cyanide. Triphenyl formazan (TF) formed is first dissolved in acetic acid and later extracted by toluene. Optical density (OD) of the color is measured at 485 nm. Dehydrogenases activity is calculated from the OD and expressed as specific activity per unit weight of protein. Modified method gave less relative dispersion compared to the values obtained on the same but unsonicated samples of MLSS.     

Deep-sea caging of the mussel Mytilus galloprovincialis: Potential application in ecotoxicological studies

We experimented with caging the Mediterranean mussel (Mytilus galloprovincialis) at various depths for 69 d to measure basic physiological parameters, histological response and bio-accumulation of contaminants in a deep-sea contaminated area. In preliminary experiments, we demonstrated, under artificial pressure conditions, the ability of mussels Mytilus galloprovincialis to tolerate rapid immersion (at a speed of up to 120 m min^?1). In situ experiments were performed using submerged lines enabling mussels to be maintained at depths ranging of 40–1550 m with survival rates ranging from 80 to 38%, respectively. No significant differences in condition indexes were observed between treated and control specimens. However, histological observations demonstrated a clear reduction in thickness of the digestive epithelium with increasing depth exposure. By determining the contaminants in caged mussels, we found the following values for chromium accumulation: 27.4 μg g^?1 dry weight at 580 m depth and 9.8 μg g^?1 dry weight at 1550 m. Selected stations were located downstream of an industrial effluent at 420 m. The biological and environmental consequences of deep-sea contamination demonstrate the suitability of caged mussels for monitoring contaminant accumulation.     

Analytical studies on the pollution of argeş river

Using two analytical techniques (ICP‐AES and ASV) the heavy metal pollution of Arge? River was studied. These techniques are characterized by similar analytical performances.

The samples were collected from 13 sites starting from Capra Lake (altitude 2241 m) and finishing at Oltenita city (altitude 10 m).

Arge? River is the fifth longest river in Romania after Siret, Mure?, Olt and Some?, its length is 340 km and the river flows through four cities, Curtea de Arge?, Pite?ti, Gae?ti and Oltenita.

The results of the determinations of Cu, Cd, Zn and Pb, indicate that the Arge? River shows relatively low pollution.     

The Reuse of Urban and Industrial Waste in Tai-Lin-Pu Reclamation Project,Taiwan

Abstract

This study introduces the principles of KMG's (Kaoshiung Municipal Government) dealing with the non-poisonous urban and industrial waste through reclamation of shore land in reinforcing a sense of coastal protection and land development in Tai-Lin-Pu coastal area, southern Taiwan.

Through a series of experimental studies, we found that substitutes of coarse aggregate with a broad spectrum of integrating slag powder, fly ash, and cementitious material can be obtained with a benefit up to 80% saving of cement. the integrated aggregates from the non-poisonous industrial wastes were subsequently made into armour units and used in the field tests at Tai-Lin-Pu coastal area, where the shorelines are seriously eroded. After being subjected to several severe typhoon advents, the results showed that the waste-made units used as the protection breakwater, together with construction wastes and excavated soil as the filling material, prove to be an effective practice in utilizing recycled urban waste to reclaim erosive shore lands. Moreover, this study also demonstrates that through detailed analysis of the waste characteristics, scrap material could be turned into valuable construction aggregates, and highlights the value of non-poisonous urban and industrial waste as a alternative resource for the shore protection engineering.     

Mitochondrial cytochrome b variation in sleeper sharks (Squaliformes: Somniosidae)

Sleeper sharks are a poorly studied group of deep-sea sharks. The subgenus, Somniosus, contains three morphologically similar species: S. microcephalus found in the Arctic and North Atlantic; S. pacificus in the North Pacific; and S. antarcticus in the Southern Ocean. These sharks have been reported mainly in temperate to polar waters and occasionally in subtropical locations. They have not been recorded in tropical waters. This study investigates the relationships among the accepted species of Somniosus through analysis of mitochondrial cytochrome b sequence variation. Seventy-five samples were examined from four sampling locations in the North Pacific, Southern Ocean and North Atlantic. Twenty-one haplotypes were found. A minimum spanning parsimony network separated these haplotypes into two divergent clades, an S. microcephalus and an S. pacificus/antarcticus clade, strongly supporting the distinction of S. microcephalus as a separate species from the Pacific sleeper shark species. Analysis of genetic structure within the S. pacificus/antarcticus clade (analysis of molecular variance, allele frequency comparisons, and a nested clade analysis) showed limited or no differences amongst three populations. Further examination of genetic variation at more variable mtDNA and nuclear markers is needed to examine the species status of S. pacificus and S. antarcticus.     

Linkages between phenology, pollination, photosynthesis, and reproduction in deciduous forest understory plants

Light availability in the understory of deciduous forests changes drastically within the growing season due to the foliage dynamics of canopy trees. Because flowering phenology, photosynthetic characteristics, and fruiting success respond to such strong seasonality in light availability, we hypothesized that understory plants in such ecosystems should describe distinct phenological groups or syndromes where "syndrome" is defined only as a set of characteristics that co-occur. To identify these phenological syndromes, we studied the flowering phenology, fruit or seed set, and photosynthetic characteristics for 18 perennial understory herbaceous species that differed in reproductive strategy over eight years in a deciduous forest in northern Japan. Three phenological groups emerged from this study: (1) spring bloomers, flowering and fruiting before the completion of canopy closure; (2) early-summer bloomers, flowering during the progress of canopy closure and fruiting after canopy closure; and (3) late-summer bloomers, flowering and fruiting after canopy closure. The spring bloomers had high photosynthetic rates and high fruiting abilities, but the flowering time varied considerably among years due to yearly fluctuations of snowmelt date. Bumble bee-pollinated species of spring bloomers showed variable seed-set success, while fly-pollinated species showed relatively stable seed sets over the years. The early-summer bloomers showed low fruiting abilities irrespective of pollination success, reflecting severe resource limitation with decelerating light availability during fruit development. Although the late-summer bloomers showed low photosynthetic rates under low-light conditions, high fruit-set success was attained if pollination was sufficient. These results support our hypothesis that phenological syndromes may be found in deciduous forest understory plants. Given that reproductive success of bee-pollinated spring bloomers is highly susceptible to seasonal fluctuation, climate change may have its strongest impacts on this group.