Somatic Coliphage Profiles of Produce and Environmental Samples from Farms in Northern México

Somatic coliphages were quantified in 459 produce and environmental samples from 11 farms in Northern Mexico to compare amounts of somatic coliphages among different types of fresh produce and environmental samples across the production steps on farms. Rinsates from cantaloupe melons, jalapeño peppers, tomatoes, and the hands of workers, soil, and water were collected during 2011–2012 at four successive steps on each farm, from the field before harvest through the packing facility, and assayed by FastPhage MPN Quanti-tray method. Cantaloupe farm samples contained more coliphages than jalapeño or tomato (p range <0.01–0.03). Across production steps, jalapeños had higher coliphage percentages before harvest than during packing (p = 0.03), while tomatoes had higher coliphage concentrations at packing than all preceding production steps (p range <0.01–0.02). These findings support the use of targeted produce-specific interventions at multiple points in the process of growing and packing produce to reduce the risk of enteric virus contamination and improve food safety during fruit and vegetable production.     

Temperature-Dependent Persistence of Human Norovirus Within Oysters (<Emphasis Type="Italic">Crassostrea virginica</Emphasis>)

This study characterizes the persistence of human norovirus in Eastern oysters (Crassostrea virginica) held at different seawater temperatures. Oysters were contaminated with human norovirus GI.1 (Norwalk strain 8FIIa) by exposing them to virus-contaminated water at 15 °C, and subsequently holding them at 7, 15, and 25 °C for up to 6 weeks. Viral RNA was extracted from oyster tissue and hemocytes and quantitated by RT-qPCR. Norovirus was detected in hemocytes and oysters held at 7 and 15 °C for 6 weeks and in hemocytes and oysters held at 25 °C for up to 2 and 4 weeks, respectively. Results confirm that NoV is quite persistent within oysters and demonstrate that cooler water temperatures extend norovirus clearance times. This study suggests a need for substantial relay times to remove norovirus from contaminated shellfish and suggests that regulatory authorities should consider the effects of water temperature after a suspected episodic norovirus-contamination event.     

Structural Organization of Baculovirus Occlusion Bodies and Protective Role of Multilayered Polyhedron Envelope Protein

Baculoviruses are the ingenious insect pathogens. Outside the host, baculovirus occlusion bodies (OB) provide stability to occlusion-derived viruses (ODV) embedded within. The OB is an organized structure, chiefly composed of proteins namely polyhedrin, polyhedron envelope protein (PEP) and P10. Currently, the structural organization of OB is poorly understood and the role of OB proteins in conferring the stability to ODV is unknown. Here we have shown that the assembly of polyhedrin unit cells into an OB is a rapid process; the PEP forms in multiple layers; the PEP layers predominantly contribute to ODV viability. Full-grown OBs (n = 36) were found to be 4.0 ± 1.0 µm in diameter and possessed a peculiar geometry of a truncated rhombic dodecahedron. The atomic force microscopy (AFM) study on the structure of OBs at different stages of growth in insect cells revealed polyhedrin assembly and thickness of PEP layers. The thickness of PEP layers at 53 h post-transfection (hpt) ranged from 56 to 80 nm. Mature PEP layers filled up approximately one third of the OB volume. The size of ODV nucleocapsid was found to be 433 ± 10 nm in length. The zeta potential and particle size distribution study of viruses revealed the protective role of PEP layers. The presence of a multilayered PEP confers a viable advantage to the baculoviruses compared to single-layered PEP. Thus, these findings may help in developing PEP layer-based biopolymers for protein-based nanodevices, nanoelectrodes and more stable biopesticides.     

Assessing agricultural systems vulnerability to climate change to inform adaptation planning: an application in Khorezm,Uzbekistan

Agriculture is one of the most vulnerable sectors to climate change. The current vulnerability assessments through traditional fragmented sectoral methods are insufficient to capture the effects on complex agricultural systems. Therefore, the traditional methods need to be replaced by integrated approaches. The objective of this study is to propose a holistic vulnerability assessment method for agricultural systems. By aggregating both agro-ecological and socio-economic information, we develop an agricultural systems vulnerability index (ASVI) which allows for (i) a classification of geographical units according to their vulnerability level, (ii) an identification of key determinants of vulnerability for each unit and (iii) an assessment of adaptation policy scenarios considering their effects on the sustainability of the analysed systems. The proposed method is applied in the Khorezm region of Uzbekistan—a representative irrigated agricultural region in the lower Amu Darya river basin. A decision support tool is used to facilitate multi-criteria decision analysis, including the computation of the index and performing sensitivity analysis of the results. The assessment for Khorezm reveals significant spatial differences of vulnerability levels due to a variation of contributing factors, e.g. natural resources, water productivity, rural-urban ratio. It reveals also that feasible land and water management policies could reduce the vulnerability in Khorezm, particularly in the districts with the poorest agro-ecological conditions. Overall, the proposed method could support national and local authorities in the identification of sustainable adaptation policies for the agriculture sector.     

A life cycle comparison of greenhouse emissions for power generation from coal mining and underground coal gasification

Underground coal gasification (UCG) is an advancing technology that is receiving considerable global attention as an economic and environmentally friendly alternative for exploitation of coal deposits. UCG has the potential to decrease greenhouse gas emissions (GHG) during the development and utilization of coal resources. In this paper, the life cycle of UCG from in situ coal gasification to utilization for electricity generation is analyzed and compared with coal extraction through conventional coal mining and utilization in power plants. Four life cycle assessment models have been developed and analyzed to compare (greenhouse gas) GHG emissions of coal mining, coal gasification and power generation through conventional pulverized coal fired power plants (PCC), supercritical coal fired (SCPC) power plants, integrated gasification combined cycle plants for coal (Coal-IGCC), and combined cycle gas turbine plants for UCG (UCG-CCGT). The analysis shows that UCG is comparable to these latest technologies and in fact, the GHG emissions from UCG are about 28 % less than the conventional PCC plant. When combined with the economic superiority, UCG has a clear advantage over competing technologies. The comparison also shows that there is considerable reduction in the GHG emissions with the development of technology and improvements in generation efficiencies.     

NUTGRANJA 2.0: a simple mass balance model to explore the effects of different management strategies on nitrogen and greenhouse gases losses and soil phosphorus changes in dairy farms

Farm nutrient management has been identified as one of the most important factors determining the economic and environmental performance of dairy cattle (Bos taurus) farming systems. Given the environmental problems associated with dairy farms, such as emissions of greenhouse gases (GHG), and the complex interaction between farm management, environment and genetics, there is a need to develop robust tools which enable scientists and policy makers to study all these interactions. This paper describes the development of a simple model called NUTGRANJA 2.0 to evaluate GHG emissions and nitrogen (N) and phosphorus (P) losses from dairy farms. NUTGRANJA 2.0 is an empirical mass-balance model developed in order to simulate the main transfers and flows of N and P through the different stages of the dairy farm management. A model sensitivity test was carried out to explore some of the sensitivities of the model in relation to the simulation of GHG and N emissions. This test indicated that both management (e.g. milk yield per cow, annual fertiliser N rate) and site-specific factors (e.g. % clover (Trifolium) in the sward, soil type, and % land slope) had a large effect on most of the model state variables studied (e.g. GHG and N losses).     

Monetary incentives to avoid deforestation under the Reducing emissions from deforestation and degradation (REDD)+ climate change mitigation scheme in Tanzania

The paper estimates and compares the level of Reducing Emissions from Deforestation and Degradation (REDD+) payments required to compensate for the opportunity costs (OCs) of stopping the conversion of montane forest and miombo woodlands into cropland in two agro-ecological zones in Morogoro Region in Tanzania. Data collected from 250 households were used for OC estimation. REDD+ payment was estimated as the net present value (NPV) of agricultural rent and forest rent during land clearing, minus net returns from sustainable wood harvest, divided by the corresponding reduction in carbon stock. The median compensation required to protect the current carbon stock in the two vegetation types ranged from USD 1 tCO₂e^?1 for the montane forest to USD 39 tCO₂e^?1 for the degraded miombo woodlands, of which up to 70 % and 16 %, respectively, were for compensating OCs from forest rent during land clearing. The figures were significantly higher when the cost of farmers’ own labor was not taken into account in NPV calculations. The results also highlighted that incentives in the form of sustainable harvests could offset up to 55 % of the total median OC to protect the montane forest and up to 45 % to protect the miombo woodlands, depending on the wage rates. The findings suggest that given the possible factors that can potentially affect estimates of REDD+ payments, avoiding deforestation of the montane forest would be feasible under the REDD+ scheme. However, implementation of the policy in villages around the miombo area would require very high compensation levels.     

Assessing external factors on substitution of fossil fuel by biofuels: model perspective from the Nordic region

The aim of this study is to develop a theoretical model by which to demonstrate how taxes and subsidies work as external factors to substitute fossil fuel by a forest-based biofuel. For biofuels, this study predominantly considers solid-form biomass that generates electricity; for fossil fuels, it considers coal. The model results explicated with three states by using various numeric values taken from the literature. Three states are as follows: a situation without a tax and subsidy, a situation with a biofuel subsidy, and a situation with a biofuel subsidy and a fossil fuel tax. The results of the first state exemplify current fuel market situation; those of the second indicate that the aggregate demand for biofuel has shifted upwards by around 15 % and that substitution has increased by around 18 % due to biofuel subsidies being offered. Under the third state, aggregate biofuel demand has shifted upwards by around 19 %, reduced the demand for fossil fuels by around 13 %, and increased substitution by around 31 %. This state relates to a greater sense of social welfare than other two states. It is conceivable that the joint application of taxes and subsidies will succour biofuel to supplant fossil fuel in the near future.     

The vulnerability of hydropower production in the Zambezi River Basin to the impacts of climate change and irrigation development

The Zambezi River Basin in southern Africa is relatively undeveloped from both a hydropower and irrigated agriculture perspective, despite the existence of the large Kariba and Cahora Bassa dams. Accelerating economic growth increases the potential for competition for water between hydropower and irrigated agriculture, and climate change will add additional stresses to this system. The objective of this study was to assess the vulnerability of major existing and planned new hydropower plants to changes in climate and upstream irrigation demand. Our results show that Kariba is highly vulnerable to a drying climate, potentially reducing average electricity generation by 12 %. Furthermore, the expansion of Kariba generating capacity is unlikely to deliver the expected increases in production even under a favourable climate. The planned Batoka Gorge plant may also not be able to reach the anticipated production levels from the original feasibility study. Cahora Bassa’s expansion is viable under a wetting climate, but its potential is less likely to be realised under a drying climate. The planned Mphanda Nkuwa plant can reach expected production levels under both climates if hydropower is given water allocation priority, but not if irrigation is prioritised, which is likely. For both Cahora Bassa and Mphanda Nkuwa, prioritising irrigation demand over hydropower could severely compromise these plants’ output. Therefore, while climate change is the most important overall driver of variation in hydropower potential, increased irrigation demand will also have a major negative impact on downstream plants in Mozambique. This implies that climate change and upstream development must be explicitly incorporated into both project and system expansion planning.