Effects of residual antibiotics in groundwater on Salmonella typhimurium: changes in antibiotic resistance, in vivo and in vitro pathogenicity

An outbreak-causing strain of Salmonella enterica serovar Typhimurium was exposed to groundwater with residual antibiotics for up to four weeks. Representative concentrations (0.05, 1, and 100 μg L(-1)) of amoxicillin, tetracycline, and a mixture of several other antibiotics (1 μg L(-1) each) were spiked into artificially prepared groundwater (AGW). Antibiotic susceptibility analysis and the virulence response of stressed Salmonella were determined on a weekly basis by using human epithelial cells (HEp2) and soil nematodes (C. elegans). Results have shown that Salmonella typhimurium remains viable for long periods of exposure to antibiotic-supplemented groundwater; however, they failed to cultivate as an indication of a viable but nonculturable state. Prolonged antibiotics exposure did not induce any changes in the antibiotic susceptibility profile of the S. typhimurium strain used in this study. S. typhimurium exposed to 0.05 and 1 μg L(-1) amoxicillin, and 1 μg L(-1) tetracycline showed hyper-virulent profiles in both in vitro and in vivo virulence assays with the HEp2 cells and C. elegans respectively, most evident following 2nd and 3rd weeks of exposure.     

In vitro toxic effects of heavy metals on fungal growth and phosphate-solubilising abilities of isolates obtained from Phragmites australis rhizosphere

In this research, we evaluated the toxic effect of metal ions on mycelial growth and phosphate-solubilising activity of soil-borne micromycetes isolated from the Phragmites australis rhizosphere using Pikovskaya-agar plates supplemented with four metal concentrations. The diameter growth rate (DGR) decreased as the metal concentration rise for all tested fungi. Trichoderma atroviride had the fastest growth rate (1.48?cm²?day^?1) and was the least susceptible to Al³⁺, Cd²⁺, Cr³⁺, Cu²⁺ and Pb²⁺ with a median effective concentration (MEC₅₀) of 12.19, 0.48, 4.51, 11.44 and 50.05?mM, respectively. Aspergillus japonicus was the most tolerant to Co²⁺, Ni²⁺ and Zn²⁺, with MEC₅₀ values of 3.36, 1.095 and 2.34?mM, respectively. Penicillium italicum was the most tolerant to Cr6⁺ (MEC₅₀?=?0.677?mM). The ability to solubilise phosphate remained, despite the decrease in the DGR, and P. italicum and Penicillium dipodomyicola had the highest Phosphate Solubilisation Indexes (PSIs) at 1.97 and 2.12, respectively. In particular, P. italicum recorded the highest PSI of all the studied isolates at 0.62?mM Cr³⁺ (PSI?=?4.74). A. japonicus and T. atroviride were the most tolerant isolates to all tested metals, which suggests that these isolates are promising candidates for further study with regard to mycoremediation and biofertilisation of metal-polluted soils.     

Antioxidant effect of L-cysteine on sodium-valproate-induced oxidative stress in rat liver: biochemical and ultrastructural approaches

L-Cysteine has protective efficacy in cases of oxidative tissue injury. Sodium valproate is widely used as an anticonvulsant and an antidepressant in spite of hepatotoxicity as side effect. The aim of this study was to evaluate the protective role of L-cysteine in liver toxicity induced by sodium valproate overdose. Release of the hepatic enzymes, aspartate aminotransferase and alanine aminotransferase, and levels of lipid profiles, as well as the oxidative, enzymatic, and non-enzymatic antioxidant were assessed. Liver damage was judged histologically. L-Cysteine decreased the activity of alanine aminotransferase and aspartate aminotransferase, as well as improved the level of lipid profile, increased the enzymatic antioxidant (catalase, superoxide dismutase, glutathione peroxidase and glutathione reductase), and decreased the lipid peroxidation. L-Cysteine administration inhibited liver injury of sodium valproate.     

Nitrogen to phosphorus ratios of two understory plant species in response to nitrogen and phosphorus addition in tropical forest of southern China北大核心CSCD

The secondary tropical forests in southern China have suffered from frequent human disturbance and increasing high N deposition. In order to explore the nutrient limitation status in secondary tropical forests of South China, this 3-year field experiment of nitrogen (+N) and phosphorus (+P) addition investigated nitrogen (N) and phosphorus (P) concentrations of the aboveground tissue (leaf and branch) of two widely distributed understory native species Clerodendrum cyrtophyllum and Uvaria microcarpa in a secondary tropical forest of South China. The results showed that: 1) the N and P concentrations of the two species were significantly different (P < 0.001); N and P concentrations of different tissues in the same species were different; N&P addition greatly affected N and P concentrations in branch rather than new leaf and older leaf. 2) +N treatment had no significant effect on N or P concentrations of either species, but significantly decreased N:P ratios (P = 0.001), at the level of 9% for C. cyrtophyllum and 50% for U. microcarpa, respectively. 3) +P treatment had no significant effect on tissue N concentrations, but significantly increased plant P concentrations (P < 0.001), at 54% for C. cyrtophyllum and 88% for U. microcarpa, respectively; +P treatment significantly decreased plant N:P ratios (P < 0.001), at 28% and 60%, respectively. 4) The alterations of P concentrations of two species had significantly negative correlations with N:P alterations under +N/+P treatment (P < 0.001), suggesting that the alteration of P concentrations in plant tissue was the major driver for N:P alteration. Our results show that N and P addition would affect tissue N and P concentrations of the two species, with +P treatment having relatively greater effect on nutrient concentrations than +N treatment; the branch is more sensitive than new or older leaf in response to nutrient addition. Therefore, P availability may be the limiting factor for plant growth in the tropical forests.     

Effect of ultra-micro powder Dendrobium officinale on the molecular diversity of intestinal bacteria in mice with spleen-deficiency constipation北大核心CSCD

This research aimed to study the effect of ultra-micro powder Dendrobium officinale on the molecular diversity of intestinal bacteria in mice with spleen-deficiency constipation, in order to provide scientific basis for ultra-micro D. officinale therapy. The mice with spleen-deficiency constipation in treatment groups were respectively given the traditional decoction of D. officinale and 50% dose ultra-micro powder D. officinale. The metagenome DNA of intestinal flora was extracted from intestinal contents. Then ARDRA analysis was made after PCR by universal primer of bacteria. The results showed that OTUs, Shannon index and Brillouin index were the same between the normal group and the 50% dose ultra-micro powder group, and between the model group and the traditional decoction group, but greater in the former two groups than the latter ones. The similarity coefficient (0.500 0) was bigger between the 50% dose ultra-micro powder group and the normal group than between the model group and the traditional decoction group, which was 0.181 8. Both cluster analysis and principal components analysis showed that the molecular diversity of intestinal microbiotia in mice of 50% dose ultra-micro powder group was the closest to that in the normal group. The results showed that the weakened molecular diversity of intestinal bacteria in mice with spleen-deficiency constipation can be regulated by the two kinds of D. officinale treatments to different extent. The efficacy of 50% dose ultra-micro powder D. officinale is better than the traditional decoction.     

Toxicity evaluation of 10 oil gelling agents北大核心CSCD

Oil gelling agents are widely used in emergency response of marine oil spills. However, the biological toxicity of oil gelling agents is not well understood. This research aimed to evaluate the environmental safety of oil gelling agents used for rapid removal and cleanup of marine oil spills. We used luminescent bacteria (Acinetobacter sp. Tox2 and Acinetobacter sp. RecA) combined with exposure experiment using marine medaka (Oryzias melastigma) juveniles to detect the acute toxicity and genotoxicity of 10 oil gelling agents. As a result, a certain level of acute toxicity was detected from the oil gelling agent FOA and GMN-01 (the toxicity equivalent to 0.067 mg/L and 0.084 mg/L of HgCl2, respectively), and a certain level of genotoxicity was detected from the oil gelling agent NORSOREX (the toxicity equivalent to 0.307 mg/L of MMC) by the luminescent bacteria test. However, no obvious acute toxicity or genotoxicity was detected from the above three oil gelling agents in fish-exposure experiments. Our results suggest that the 10 oil gelling agents have no obvious acute toxicity or genotoxicity to higher organisms (including marine medaka). The luminescent bacteria test is more sensitive in detecting biological toxicity of oil gelling agents. This study provides a reference for environmental safety evaluation of the oil gelling agents used in the cleaning up of the marine oil spills.     

Review on the study of mercury/silver ions-pyrimidine base pairs in DNA duplexes and their application in detection technology北大核心CSCD

Nucleic acids and their analogues are getting more and more attention. Metal-mediated base pairs as a kind of simple and functionalized nucleic acids in special positions have widened the scope of application of functional nucleic acids and their analogues. In this type of base pairs, the representative is the interaction between metal ions and pyrimidine bases, especially the research on thymine-Hg2+-thymine (T-Hg2+-T) and cytosine-Ag+-cytosine (C-Ag+-C) base pairs. This review summarizes the structure and mechanism of metal-mediate pyrimidine base pairs as well as the application in the biochemical analysis. It explores the mode and ratio of coordination between metal ions and base pairs, the effects on the stability of DNA helical structure, the related crystal structure and the three-dimensional configuration information in the DNA helix. The analytical application mainly includes various probes of metal ions, small molecules, protein and the detection of single nucleotide polymorphism. Among them the most widely used metal ions detection, and its combination with spectrum technology, visualization and amplification technology greatly promoted the rapid development of sensitive detection technology. In further studies, it is necessary to reveal the mechanism of interaction between T-Hg2+-T and C-Ag+-C, and more attention should be paid to combining of T-Hg2+-T and C-Ag+-C base pairs with other new technologies. The scope of practical application should also be further extended.     

Characterization and catabolic genes detection of three oil-degrading Rhodococcus spp.北大核心CSCD

Oil pollution is one of the major factors causing environmental deterioration. Bioremediation of oil contaminated environments by microorganisms attracts much research attention. This study aimed to screen efficient oil-degrading bacteria from oil contaminated soil and analyze their characteristics and catabolic genes. Oil-degrading bacteria were screened from oil contaminated soil in minimal medium containing crude oil and identified by morphological, physiological and biochemical characteristics and 16S rDNA sequence analysis. Their growth and degradation characteristics were studied with ultraviolet spectroscopy and GC-MS analysis. The surfactant production was studied by adopting culture method. The major oil-degrading related genes were detected by t he PCR a mplification. As a result, t hree oil-degrading bacteria strains named KB1, 2182 and JC3-47 were isolated from the oil contaminated soil samples. The strains could use crude oil as the sole carbon source to degrade oil with a degrading rate of 41.02%, 32.26% and 55.90%, respectively, when cultured in minimal medium containing crude oil for 3 days. The bacteria were identified to belong to genus Rhodococcus. With 100% similarity of 16S rDNA sequences of the three strains with known ones of Rhodococcus, KB1 was preliminarily identified as Rhodococcus erythropolis, 2182 as Rhodococcus equi, and JC3-47 as Rhodococcus qingshengii. They grew well at 10-50 °C, with the initial pH of 3-9 and the NaCl concentration of 0-5%. The optimal temperature for bacterial growth was 35 °C, 35 °C and 30 °C respectively. KB1 and 2182 could grow at pH 2 and 9.0% of NaCl. The bacteria grew well in broth containing different organic substrates as sole carbon source, such as n-dodecane, n-octadecane, benzene, methylbenzene, xylene and naphthaline. KB1 and JC3-47 could grow well in broth containing pyrene. GC-MS analysis revealed that the bacteria could effectively degrade medium- and long-chain alkane components in crude oil. The bacteria produced biosurfactants and decreased the surface tension of the culture broth. They also showed adhesion activities to n-hexadecane. The oil-degrading related genes such as alkane monooxygenase, aromatic-ring-hydroxylating dioxygenase and catechol dioxygenase genes were detected in all the three strains. Besides, biphenyl dioxygenase genes were detected in KB1 and 2182. The isolated Rhodococcus spp. strains could effectively degrade petroleum hydrocarbons with high adaptabilities to extreme environments such as high salt and low temperature. They are supposed to be applied broadly in the bioremediation of oil contaminated soil in such environments.     

Are low infidelity rates in feral horses due to infanticide?

A growing number of studies conducted on diverse taxa have shown that extra-pair/group paternity is higher than what would be predicted from behavioral observations alone. While it may be beneficial for females to mate with multiple males, this often results in offspring not sired by the behavioral father, which could influence offspring survival, especially in social mammals. Feral horses (Equus caballus) maintain stable social relationships over several years, usually with one stallion defending a harem band of unrelated mares against other males. Sneak copulations by subordinate males have been observed and mares sometimes change bands, both of which can result in foals sired by males other than the dominant band stallion. We measured female fidelity in free-ranging feral horses in 23 bands, with 51 foals over four foaling seasons and tested offspring paternity against parental behaviors. We used 12 polymorphic microsatellite loci and the program CERVUS 2.0 to determine and exclude potential sires. The majority of mares remained in the band with the sire of their foal resulting in most foals being sired by the band stallion. Most foals that were not sired by the band stallion were born in the year after a round-up and we could not determine if they were the result of band changing or sneak copulations. Foals born into a band without their sire had lower survival rates and mothers were significantly more protective of foals not sired by the band stallion. These findings suggest that band stability increases the reproductive success of mares and support the importance of infanticide risk in equid social structure.     

An ecological risk assessment model for a pulsed contaminant emission into a wetland channel flow

As a continuation of the modelling on ecological degradation and hydraulic dispersion of pollutant emission into an idealized two-dimensional free-surface wetland flow (Zeng, L., Chen, G.Q., 2009b. Ecological degradation and hydraulic dispersion of contaminant in wetland. Ecol. Model., doi:10.1016/j.ecolmodel.2009.10.024), an ecological risk assessment model for the typical case of a pulsed contaminant emission into a realistic three-dimensional wetland channel flow is presented in this paper for the fate of cross-sectional mean concentration under environmental dispersion. An environmental dispersion model for the mean concentration is devised as an extension of Taylor’s classical analysis on dispersion in fluid flows. The velocity distribution and the environmental dispersivity in the fully developed steady flow through the wetland is found and illustrated with limiting cases covering various known solutions for the porous media flow between parallel plates, flow in a shallow wetland, sweeping flow in a densely vegetated wetland, and single phase flow in a channel. Obtained by Aris’s method of moments, the environmental dispersivity is shown characterized with multi-scale asymptotic time variations with stem dominated stage, transitional stage, and width-depth-stem dominated stage. Based on the solution for the evolution of contaminant cloud in the wetland channel flow, critical length and duration of the contaminant cloud with concentration beyond given environmental standard level are concretely illustrated for typical pollutant constituents in wastewater emission. Under the same emission intensity and environmental standard, the duration of contaminant cloud in the wetland channel is revealed shorter than that in a free surface wetland, due to the lateral effect.