Research progress in microbial cytochrome P450 and xenobiotic metabolism北大核心CSCD

Cytochrome P450 (CYP450s) is a type of heme-mercaptide protein superfamily, which is distributed widely in animals, plants, and microorganisms. CYP450s can oxidize and degrade many exogenous compounds such as drugs, herbicides, pesticides, some persistent organic pollutants, and so on. Based on recent researches, this paper reviews the nomenclature, classification, structure, and catalytic mechanism of P450 enzymes, and summarizes the research progresses in the metabolism and biodegradation of xenobiotics using P450 enzymes from microorganisms. The nomenclature and classification of the P450 gene superfamily mainly rely on the similarities of amino acid sequences. Although the structures of P450 are conserved, their recognition sites towards to the substrates are variable. This is also the structural basis for the catalytic diversities of P450 enzymes. Few P450 enzymes from bacteria and fungi can metabolize and degrade xenobiotics such as polycyclic aromatic hydrocarbons, herbicides, and so on. However, these P450 enzymes are less likely be used in practical applications because of their low catalytic activities. In the future, more P450 enzymes with high degradable efficiencies towards xenobiotics are needed to be obtained using multiple omics tools or modifying the existing P450 enzymes, to achieve the bioremediation of the environment. © 2018 Science Press. All rights reserved.     

Community structure and biotic integrity of aquatic plants along the North Canal in Beijing北大核心CSCD

Aquatic plants along the North Canal in Beijing were studied to identify the community structure of aquatic plants and vegetation index of biotic integrity (VIBI), and to provide scientific basis for the management and protection of urban rivers. Aquatic plants from 49 sampling sites along the North Canal were investigated during June 2015. Based on the field data, distributing range analysis, discriminatory power analysis, and correlation analysis were used stepwise to select core metrics from candidate metrics to establish the VIBI assessment system. The VIBI value of each sampling site was calculated as the average of the scaled values of all core metrics. Thirty-six aquatic plant species, including 14 hygrophytes, 13 emergent species, 6 submergent species, 2 floating-leaved species, and 1 floating species were collected. Species diversity was low in the North Canal, and no aquatic plants were recorded in 28 sampling sites, of which 9 sampling sites were dried up. Five sites were in excellent condition (VIBI > 0.60), 5 were good (0.60 > VIBI > 0.38), 7 were fair (0.38 > VIBI > 0.23), and 4 were poor (VIBI < 0.23). Based on the distribution of VIBI, Shahe River and Wenyu River upstream, and Fenghe River located in suburbs had a higher VIBI. Downstream tributaries, such as Qinghe River, Bahe River, and Liangshui River, had a lower VIBI. Correlation analysis showed that habitat quality, habitat complexity, and vegetation diversity along riparian zones were the important factors affecting VIBI along the North Canal, Beijing. Aquatic plants along the North Canal showed low species diversity owing to human disturbance. VIBI along tributaries with limited disturbance from human activities was higher; however, VIBI along tributaries disturbed by frequent human activities was lower. © 2018 Science Press. All rights reserved.     

The interaction of heat shock proteins and some components of plant viruses北大核心CSCD

Considerable research has indicated that heat shock proteins (Hsp), as molecular chaperones, carry out many biological activities of plant viruses by folding, transporting, translocating, assembling, or degrading client proteins. It is fundamental to develop resistant plant varieties and novel anti-viral agents by determining the interaction mechanisms between plant viruses and hosts. In this study, we first reviewed the classification, gene and protein structure, and biological significances. We then analyzed the assembling mechanism of Hsp70 or Hsp90, plant host cofactors, and RNA-dependent RNA polymerases in a viral replicase complex, and the mechanism of interaction and subcellular localization between Hsp70 and some plant virus components. We highlighted the mechanism of interaction and movement between Hsp70 and some plant virus components and the effect of Hsp expression of plant hosts or viruses. The results indicated where the mechanism occurred, the participating factors, energy supply, and material conversion between Hsps and the plant virus components for the course of the intracellular movement, local movement between cells, and long-distance movement, and showed the Hsp type specificity and the law of dynamic Hsp expression in plant hosts infected by viruses. The studies mainly focused on the two Hsp factors and the plant viral components, indicating limited coordination mechanisms among many nucleic acids, proteins, and polysaccharides in macromolecular protein complexes (MRC). Future research should analyze the translocation mechanism between client proteins and Hsps, the coordination mechanism between Hsps and MRC components, and the relation between MRC and the plant tissue structure. © 2018 Science Press. All rights reserved.     

Environmental risk mapping of accidental pollution and its zonal prevention in a city

Accidental releases of pollution can have severe environmental, societal, economic, and institutional consequences. This paper considers the use of risk mapping of accidental pollution events, and zonal prevention measures for alleviating the impact on large urban areas. An Environmental Pollution Accident Risk Mapping (EPARM) model is constructed according to a mapping index system supported by quantitative sub-models dedicated to evaluating the risk arising from different sources of potential accidental pollution. The EPARM approach consists of identifying suitable indexes, assessment of environmental risk at regional and national scales based on information on previous pollution accidents and the prevailing environmental and social conditions, and use of GIS to map the overall risk. A case study of pollution accidents in Minghang District, Shanghai, China is used to demonstrate the effectiveness of the model. The paper also proposes a systemic framework for accidental environmental pollution risk prevention, and detailed countermeasures for specific risk zones.     

Dancing to different tunes: heterospecific deciphering of the honeybee waggle dance

Although the structure of the dance language is very similar among species of honeybees, communication of the distance component of the message varies both intraspecifically and interspecifically. However, it is not known whether different honeybee species would attend interspecific waggle dances and, if so, whether they can decipher such dances. Using mixed-species colonies of Apis cerana and Apis mellifera, we show that, despite internal differences in the structure of the waggle dances of foragers, both species attend, and act on the information encoded in each other’s waggle dances but with limited accuracy. These observations indicate that direction and distance communication pre-date speciation in honeybees.     

Electrocoagulation of palm oil mill effluent as wastewater treatment and hydrogen production using electrode aluminum

Palm oil mill effluent (POME) is highly polluting wastewater generated from the palm oil milling process. Palm oil mill effluent was used as an electrolyte without any additive or pretreatment to perform electrocoagulation (EC) using electricity (direct current) ranging from 2 to 4 volts in the presence of aluminum electrodes with a reactor volume of 20 L. The production of hydrogen gas, removal of chemical oxygen demand (COD), and turbidity as a result of electrocoagulation of POME were determined. The results show that EC can reduce the COD and turbidity of POME by 57 and 62%, respectively, in addition to the 42% hydrogen production. Hydrogen production was also helpful to remove the lighter suspended solids toward the surface. The production of Al(OH)XHO at the aluminum electrode (anode) was responsible for the flocculation-coagulation process of suspended solids followed by sedimentation under gravity. The production of hydrogen gas from POME during EC was also compared with hydrogen gas production by electrolysis of tap water at pH 4 and tap water without pH adjustment under the same conditions. The main advantage of this study is to produce hydrogen gas while treating POME with EC to reduce COD and turbidity effectively.     

Measurement and assessment of carrying capacity of the environment in Ningbo, China

Carrying Capacity of the Environment (CCE) provides a useful measure of the sustainable development of a region. Approaches that use integrated assessment instead of measurement can lead to misinterpretation of sustainable development because of confusion between Environmental Stress (ES) indexes and CCE indexes, and the selection of over-simple linear plus models. The present paper proposes a comprehensive measurement system for CCE which comprises models of natural resources capacity, environmental assimilative capacity, ecosystem services capacity, and society supporting capacity. The corresponding measurable indexes are designed to assess CCE using a carrying capacity surplus ratio model and a vector of surplus ratio of carrying capacity model. The former aims at direct comparison of ES and CCE based on the values of basic indexes, and the latter uses a Euclidean vector to assess CCE states. The measurement and assessment approaches are applicable to Strategic Environmental Assessment (SEA) and environmental planning and management. A case study is presented for Ningbo, China, whereby all the basic indexes of ECC are measured and the CCE states assessed for 2005 and 2010.     

Screening and detection of biomarkers in chickpea plants exposed to chromium and cadmium

A broad screening protocol, covering the most general phytochemical groups of compounds, was developed on the basis of high performance thin layer chromatography (HPTLC). A total of six TLC systems, comprising three derivatization reagents, two stationary phases and two mobile phases, were included. The screening method was applied for the identification of biomarkers in the chickpea plant exposed to cadmium and chromium. The biomarkers were selected on the basis of significant changes (0.26-4.6 fold) in concentration levels of phytochemicals. Totally, five different amino acids, three organic acids, one sulphur containing compound and one sugar were identified as biomarkers in chickpea exposed heavy metal.     

All clear? Meerkats attend to contextual information in close calls to coordinate vigilance

Socio-demographic factors, such as group size and their effect on predation vulnerability, have, in addition to intrinsic factors, dominated as explanations when attempting to understand animal vigilance behaviour. It is generally assumed that animals evaluate these external factors visually; however, many socially foraging species adopt a foraging technique that directly compromises the visual system. In these instances, such species may instead rely more on the acoustical medium to assess their relative risk and guide their subsequent anti-predator behaviour. We addressed this question in the socially foraging meerkat (Suricata suricatta). Meerkats forage with their head down, but at the same time frequently produce close calls (‘Foraging’ close calls). Close calls are also produced just after an individual has briefly scanned the surrounding environment for predators (‘Guarding’ close calls). Here, we firstly show that these Guarding and Foraging close call variants are in fact acoustically distinct and secondly subjects are less vigilant (in terms of frequency and time) when exposed to Guarding close call playbacks than when they hear Foraging close calls. We argue that this is the first evidence for socially foraging animals using the information encoded within calls, the main adaptive function of which is unrelated to immediate predator encounters, to coordinate their vigilance behaviour. In addition, these results provide new insights into the potential cognitive mechanisms underlying anti-predator behaviour and suggest meerkats may be capable of signalling to group members the ‘absence’ of predatory threat. If we are to fully understand the complexities underlying the coordination of animal anti-predator behaviour, we encourage future studies to take these additional auditory and cognitive dimensions into account.     

Spatial distributions and eco-partitioning of soil biogeochemical properties in the Everglades National Park

Large-scale ecosystem restoration efforts, such as those in the Florida Everglades, can be long-term and resource intensive. To gauge success, restoration efforts must have a means to evaluate positive or negative results of instituted activities. Edaphic properties across the Everglades landscape have been determined to be a valuable metric for such evaluation, and as such, a baseline condition from which to make future comparisons and track ecosystem response is necessary. The objectives of this work were to document this baseline condition in the southern most hydrologic unit of the Everglades, Everglades National Park (ENP), and to determine if significant eco-partitioning of soil attributes exists that would suggest the need to focus monitoring efforts in particular eco-types within the ENP landscape. A total of 342 sites were sampled via soil coring and parameters such as total phosphorus (TP), total nitrogen (TN), total carbon (TC), total calcium, total magnesium, and bulk density were measured at three depth increments in the soil profile (floc, 0-10 cm, and 10-20 cm). Geostatistical analysis and GIS applications were employed to interpolate site-specific biogeochemical properties of soils across the entire extent of the ENP. Spatial patterns and eco-type comparisons suggest TC and TN to be highest in Shark River Slough (SRS) and the mangrove interface (MI), following trends of greatest organic soil accumulation. However, TP patterns suggest greatest storages in MI, SRS, and western marl and wet prairies. Eco-partitioning of soil constituents suggest local drivers of geology and hydrology are significant in determining potential areas to focus monitoring for future change detection.