Broad-band versus narrow-band irradiance for estimating latitude by archival tags

The relative effectiveness of different bands of irradiance to estimate the latitude of archival tags was evaluated. These tags are placed on fishes in order to describe their movements during long distance migrations. Measurements were recorded of broad-band irradiance with and without a cosine collector and narrow-band irradiance of seven narrow bands with 50% attenuation 30 nm on either side of their central wavelength of 400 (violet), 450 (blue), 500 (blue–green), 550 (green), 600 (yellow), 650 (orange), and 700 nm (red). A holographic, cosine collector was used to reduce the vertical transmission of irradiance to the sensor and to increase horizontal transmission of irradiance so the sensor detected more of the diffuse irradiance penetrating the water at dawn and dusk. Daily measurements were made during seven periods of 1–2 days each, beginning 28 June (after 21 June solstice) and ending on 6 October 1999 (after September 23 equinox) of submarine irradiance at 15-s intervals at a fixed depth (10 m) and location (38.31°N; 123.08°W) in Horseshoe Cove, California. Irradiance transmission at this site is intermediate between the clearest offshore waters, where blue irradiance (450 nm) penetrates farther with depth than green irradiance (550 nm) and most oceanic and coastal waters, where green penetrates farther than blue irradiance. Two algorithms were used to estimate latitude, the maximum slope method and the maximum logarithmic difference method. The broad-band, cosine-corrected light, excluding those deployments near the equinox when error is highest, produced an estimate of latitude of 38.30° for both methods and a latitudinal error of ±34.4 km for the former and ±27.2 km for the latter. The mean latitudinal error for non-cosine-collected, broad-band irradiance was ±190.9 km, using the slope algorithm and ±184.8 km using the difference algorithm. The blue band of irradiance, which attenuates least with increasing depth in clear, oceanic water, also produced a comparatively high-latitudinal error of ±163.8 km error for the former algorithm and ±170.4 km for the latter algorithm. Tag designers should consider using cosine-collectors over the irradiance sensors on their archival tags to increase the accuracy of position estimates.     

Spatial and temporal genetic homogeneity in the Arctic surfclam (<Emphasis Type="Italic">Mactromeris polynyma</Emphasis>)

Commercially harvested marine bivalve populations show a broad range of population-genetic patterns that may be driven by planktonic larval dispersal (gene flow) or by historical (genetic drift) and ecological processes (selection). We characterized microsatellite genetic variation among populations and year classes of the commercially harvested Arctic surfclam, Mactromeris polynyma, in order to test the relative significance of gene flow and drift on three spatial scales: within commercially harvested populations in the northwest Atlantic; among Atlantic populations; and between the Atlantic and Pacific oceans. We found small nonsignificant genetic subdivision among eight populations from the northwest Atlantic (F _ST = 0.002). All of these Atlantic populations were highly significantly differentiated from a northeast Pacific population (F _ST = 0.087); all populations showed high inbreeding coefficients (F _IS = 0.432). We tested one likely source of heterozygote deficits by aging individual clams and exploring genetic variation among age classes within populations (a temporal Wahlund effect). Populations showed strikingly different patterns of age structure, but we found little differentiation among age classes. In one case, we were able to analyze genetic diversity between age classes older or younger than the advent of intensive commercial harvesting. The results generally suggest spatially broad and temporally persistent genetic homogeneity of these bivalves. We discuss the implications of the results for the biology and management of surfclam populations. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Density,size structure and aspergillosis prevalence in <Emphasis Type="Italic">Gorgonia ventalina</Emphasis> at six localities in Puerto Rico

Gorgonia ventalina’s density, size structure and lesion prevalence was measured at six sites in Puerto Rico that exhibited variation in horizontal water transparency, sedimentation rates, suspended particle matter, scleractinian and macroalgal cover. G. ventalina density varied significantly among sites (between 0.84 and 0.007 colonies/m²), and was positively correlated with water transparency. Size structure did not vary much among sites, and reflects high mortality among the smaller size classes and high survivorship in large colonies. Prevalence of active fungi-induced lesions (type I) did not vary significantly among sites and was density-independent. However, prevalence of old lesions of unknown origin (type II) did vary among reefs and was negatively correlated with water transparency. Prevalence of types I or II lesions was independent of colony size. Our results suggest that (1) turbidity and sedimentation are important abiotic factors controlling the abundance of sea fans, (2) variation in settlement success and early survivorship of recruits has more impact on the sea fan populations than variation in the survivorship of large colonies and (3) prevalence of aspergillosis (type I) at the studied sites is similar to that reported for other Caribbean reefs and supports the epizootic nature of the disease and (4) lesions with exposed skeleton are more likely to be colonized by fouling organisms at impacted reefs. The combined effects of anthropogenic impacts and aspergillosis may cause local extinctions of sea fans, as is becoming evident in many reefs in Puerto Rico.     

Genetic heterogeneity in a single year-class from a panmictic population of adult blue rockfish (<Emphasis Type="Italic">Sebastes mystinus</Emphasis>)

We used microsatellite genetic markers to investigate adult population structure and the formation of a new year-class in Sebastes mystinus (blue rockfish). Since S. mystinus may live as long as 45 years and reach reproductive age at approximately 5 years, the adult population may contain as many as eight generations of reproductive adults. We investigated whether the juveniles of the 2000 year-class and the adult population were genetically homogeneous along the California coast. We sampled approximately 100 juveniles from three sites, two sites along the Monterey Peninsula (Carmel and Monterey) in central California and one at Fort Ross in northern California, and approximately 50 adult S. mystinus from five sites throughout the population center. The adult sampling spanned approximately 700 km from the northern Channel Islands to Fort Bragg. The juveniles showed significant heterogeneity in allele frequencies among distant locations and genetic homogeneity among adjacent locations. In contrast, the adults showed genetic homogeneity over large distances (San Miguel Island to Fort Bragg), indicating little limitation of gene flow in this region. Allele frequencies of juveniles differed from adult samples and in some cases reduced genetic diversity indicative of sweepstakes recruitment (small sample of the adult reproductive potential). The genetic structure of the 2000 year-class suggests that despite a genetically homogenous adult population, settled juveniles can be genetically heterogeneous along the California coast. The results also suggest that the adults, with several year-classes, are capable of maintaining a panmictic population despite the genetic distinctiveness of individual year-classes.     

A regression tree-based method for integrating land-cover and land-use data collected at multiple scales

As data sets of multiple types and scales proliferate, it will be increasingly important to be able to flexibly combine them in ways that retain relevant information. A case in point is Amazonia, a large, data-poor region where most whole-basin data sets are limited to understanding land cover interpreted through a variety of remote sensing techniques and sensors. A growing body of work, however, indicates that the future state of much of Amazonia depends on the land use to which converted areas are put, but land use in the tropics is difficult to assess from remotely sensed data alone. An earlier paper developed new snapshots of agricultural land use in this region using a statistical fusion of satellite data and agricultural census data, an underutilized ancillary data source available across Amazonia. The creation of these land-use maps, which have the spatial detail of a satellite image and the attribute information of an agricultural census, required the development of a new statistical technique for merging data sets at different scales and of fundamentally different data types. Here we describe and assess this nonlinear technique, which reinterprets existing land cover classifications by determining what categories are most highly related to the polygon land-use data across the study area. Although developed for this region, the technique appears to hold broad promise for the systematic fusion of multiple data sets that are closely related but of different origins. The figures in the printed version of this article appear in black and white. Color figures are available from the author upon request.     

Increased sperm numbers in the vas deferens of meadow voles, <Emphasis Type="Italic">Microtus pennsylvanicus,</Emphasis> in response to odors of conspecific males

Sperm competition occurs when the sperm of two or more males compete to fertilize the egg/s of a particular female. Males of some species respond to a high risk of sperm competition by increasing the number of sperm in their ejaculates. Males may accomplish such a response by increasing the intensity or duration of contraction of the cauda epididymidis and vas deferens. During emission (first phase of the ejaculatory process), the vas deferens receives sperm from the cauda epididymidis and propels the sperm to the urethra. In this paper, we tested the hypothesis that males exposed to a high risk of sperm competition mobilize larger numbers of sperm from the cauda epididymidis to the vas deferens before initiation of copulatory behavior. This accumulation of sperm in the vas deferens would result in a larger number of sperm in the ejaculate. To test this hypothesis, we exposed male meadow voles, Microtus pennsylvanicus, to either low or high risks of sperm competition using soiled bedding of conspecific individuals. At three different times after this exposure (15, 30, or 60 min), we removed both vasa deferentia and counted the sperm within them. We found a significant increase in sperm numbers in the vas deferens of males after 30 min of being exposed to a high risk of sperm competition. The lower sperm numbers after 15 and 60 min of exposure suggest that the observed response is relatively slow and that sperm mobilized to the vasa deferentia may return to the cauda epididymides if ejaculation does not occur some time after the observed response. Our results indicate that the physiological response that may result in high sperm numbers in the ejaculate in relation to high risk of sperm competition can occur before initiation of copulatory behavior.     

Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Red bioluminescence in fishes: on the suborbital photophores of Malacosteus,Pachystomias and Aristostomias

Many deep-sea animals produce blue bioluminescence, but species of three genera of midwater dragonfishes also produce red light. In addition to numerous small body photophores, species of these genera (Malacosteus, Pachystomias and Aristostomias) have large suborbital photophores that emit red light and postorbital ones that emit blue light. Pachystomias microdon additionally has a red-emitting preorbital photophore. Fluorescence measurements from the intact suborbital photophores, and from their exposed cores, confirm the previous hypothesis that the red light emitted by Malacosteus is spectrally altered by a superficial shortwave cutoff brown filter. No such filter is present in the other two genera. Studies of the anatomy of the photophores show that the suborbital photophore of Malacosteus is similar in general organisation to other photophores, including the postorbital photophore. The red-emitting photophores of Pachystomias and Aristostomias, however, have a unique organisation, in which the bulk of the photophore comprises a gland that lies outside the thick reflector. Strands of tissue run from the gland into the photogenic core of the photophore through numerous pores in the reflector. The production and use of red light by these fishes is discussed in the context of these results.Electronic Supplementary Material Supplementary material is available for this article at     

Biology of penaeid prawns in the Suez Canal lakes

A study was made from January 1988 to March 1989 of the penaid prawns in the Great Bitter Lake and Lake Timsah located in the central part of the Suez Canal. Two species of Red Sea origin were investigated,Metapenaeus stebbingi andTrachypenaeus curvirostris; the former is by far the commoner. Both species displayed seasonal breeding over the period April to October, with peaks in the early and late parts of the season.M. stebbingi had two main cohorts each year. A spring-spawned cohort survived 16 mo, and attained modal sizes of 23 mm carapare length (CL) for females and 16 to 17 mm CL for males. The autumn-spawned cohort survived 13 mo, and reached modal sizes of 20 mm and 15 mm CL for males and females, respectively. The reasons for the success ofM. stebbingi in the Canal lakes, in contrast to other Lessepsian penaeids which have flourished in the Mediterranean Sea, have been considered. The main factors are that it is essentially a shallow-water species, with excellent tolerance of salinity variations and adverse environments. However, the Canal lake populations have smaller maximum sizes, and mature earlier, than those in open seas.