Isolation and characterization of a diverse group of phenylacetic acid degrading microorganisms from pristine soil

A diverse range of microorganisms capable of growth on phenylacetic acid as the sole source of carbon and energy were isolated from soil. Sixty six different isolates were identified and grouped according to 16S rRNA gene RFLP analysis. Subsequent sequencing of 16S rDNA from selected strains allowed further characterization of the phenylacetic acid degrading population isolated from soil. Nearly half (30) of the isolates are Bacillus species while the rest of the isolates are strains from a variety of genera namely, Arthrobacter, Pseudomonas, Rhodococcus, Acinetobacter, Enterobacter, Flavobacterium, and Paenibacillus. Sixty-one of the sixty-six strains reproducibly grew in defined minimal liquid culture medium (E2). All strains isolated grew when at least one hydroxylated derivative of phenylacetic acid was supplied as the carbon source, while 59 out of the 61 strains tested, accumulated ortho-hydroxyphenylacetic acid in the assay buffer; when pulsed with phenylacetic acid. Oxygen consumption experiments failed to indicate a clear link between phenylacetic acid and hydroxy-substituted phenylacetic acid in isolates from a broad range of genera.     

Assessing breeding potential of peregrine falcons based on chlorinated hydrocarbon concentrations in prey

Peregrine falcons (Falco peregrinus) now breed successfully in most areas of North America from which they were previously extirpated. The loss during the mid-part of the last century of many of the world's peregrine populations was largely a consequence of impaired reproduction caused by the effects of DDE on eggshell quality and embryo hatchability. Population recovery has been attributed to re-introduction efforts, coupled with regulatory restrictions on the use of organochlorine pesticides. Peregrines have not returned to breed in some areas, such as the Okanagan Valley of British Columbia. That region has been extensively planted in fruit orchards which were treated annually with DDT during the early 1950s to the 1970s. Ongoing contamination of avian species, including potential peregrine prey, inhabiting orchards has been documented. In response to an initiative to release peregrines around the city of Kelowna in the Okanagan Valley, we collected potential peregrine prey species and analyzed whole bodies for chlorinated hydrocarbon residues. We used a simple bioaccumulation model to predict concentrations of DDE in peregrine eggs using concentrations in prey and estimates of dietary makeup as input. Peregrines would be expected to breed successfully only if they fed on a diet primarily of doves. Feeding on as little as 10% of other species such as starlings, robins, gulls and magpies would produce DDE concentrations in peregrine eggs greater than the threshold of 15 mg/kg. We also estimated the critical concentration of DDE in total prey to be about 0.5 mg/kg, one half of the previous most conservative criterion for peregrine prey. Concentrations of dieldrin and PCBs in peregrine prey are less than suggested critical levels.     

Hydrologic Modeling Uncertainty Resulting From Land Cover Misclassification1

Abstract: A stochastic, spatially explicit method for assessing the impact of land cover classification error on distributed hydrologic modeling is presented. One‐hundred land cover realizations were created by systematically altering the North American Landscape Characterization land cover data according to the dataset’s misclassification matrix. The matrix indicates the probability of errors of omission in land cover classes and is used to assess the uncertainty in hydrologic runoff simulation resulting from parameter estimation based on land cover. These land cover realizations were used in the GIS‐based Automated Geospatial Watershed Assessment tool in conjunction with topography and soils data to generate input to the physically‐based Kinematic Runoff and Erosion model. Uncertainties in modeled runoff volumes resulting from these land cover realizations were evaluated in the Upper San Pedro River basin for 40 watersheds ranging in size from 10 to 100 km² under two rainfall events of differing magnitudes and intensities. Simulation results show that model sensitivity to classification error varies directly with respect to watershed scale, inversely to rainfall magnitude and are mitigated or magnified by landscape variability depending on landscape composition.     

Nutrient and sediment losses under simulated rainfall following manure incorporation by different methods

Incorporation of manure into cultivated soils is generally recommended to minimize nutrient losses. A 3-yr study was conducted to evaluate sediment and nutrient losses with different tillage methods (moldboard plow, heavy-duty cultivator, double disk, and no-incorporation) for incorporation of beef cattle manure in a silage barley (Hordeum vulgare L.) cropping system. Runoff depths, sediment losses, and surface and subsurface nutrient transfers were determined from manured and unmanured field plots at Lethbridge, Alberta, Canada. A Guelph rainfall simulator was used to generate 30 min of runoff. Sediment losses among our tillage treatments (137.4-203.6 kg ha(-1)) were not significantly different due to compensating differences in runoff depths. Mass losses of total phosphorus (TP) and total nitrogen (TN) in surface runoff were greatest from the no-incorporation (NI) treatments, with reductions in TP loads of 14% for double disk (DD), 43% for cultivator (CU), and 79% for moldboard plow (MP) treatments. Total N load reductions in 2002 were 26% for DD, 70% for CU, and 95% for MP treatments compared to the NI treatments. Nutrient losses following incorporation of manure with the DD or CU methods were not significantly different from the NI treatments. Manure treatments generally had lower runoff depths and sediment losses, and higher phosphorus and nitrogen losses than the control treatments. Subsurface concentrations of NH4-N, NO3-N, and TN were greatest from the MP treatments, whereas subsurface phosphorus concentrations were not affected by tillage method. Tillage with a cultivator or double disk minimized combined surface and subsurface nutrient losses immediately after annual manure applications.     

The maturing of the Triad approach: Avoiding misconceptions

Misunderstandings and misconceptions have arisen as the Triad approach has gained wider application. The Triad initiative's ability to catalyze second‐generation cleanup practices will be hampered if inaccurate or incomplete assumptions create persistent confusion about what Triad is or how it works. This article has been prepared by the multi‐agency workgroup responsible for articulating the Triad approach and coordinating national Triad efforts. It serves to address some misunderstandings about key Triad concepts. As an aid to those wishing to learn more, a new Web site (the Triad Resource Center, http://www.triadcentral.org) and a new Triad reference document from the Interstate Technology and Regulatory Council (ITRC) are introduced as sources of explanatory information supporting the Triad approach. © 2004 Wiley Periodicals, Inc.     

STREAM ASSESSMENTS USING BIOTIC INDICES: RESPONSES TO PHYSICOCHEMICAL VARIABLES1

ABSTRACT: Responses of the Wyoming Stream Integrity Index (WSII), a regionally calibrated multimetric index, were investigated in relation to background elevational changes in water quality and habitat conditions versus accelerated anthropogenic degradation at the watershed scale. Assessments were conducted for three rivers in southeast Wyoming: the Little Medicine Bow River, the Medicine Bow River, and Rock Creek. Pearson correlation coefficients and regression models related “core metrics” and index scores to elevational gradients of physicochemical variables. Velocity, substrate, and weighted habitat values were positively correlated to index scores, while suspended solids was negatively correlated. The exclusive dependence of index scores on physical variables specifies the type of environmental gradients the WSII is most robust in detecting. The individual “core metrics” Plecoptera taxa, Trichoptera taxa, percent Trichoptera without Hydropsychidae, and percent noninsects appeared most sensitive to physical changes and were thus driving associations between index scores and physical variables. Despite strong correlations with physical variables, anomalies existed where habitat conditions were good, unknown stressors existed, or gradients were naturally occurring despite “Poor” index scores (i.e., degraded stream conditions). Such findings illustrate the influence of regional variability on biotic indices and the importance of identifying sufficient reference and impaired stream reaches used to develop and calibrate multimetric indices relying on reference conditions.     

REGIONAL CHARACTERISTICS OF NUTRIENT CONCENTRATIONS IN STREAMS AND THEIR APPLICATION TO NUTRIENT CRITERIA DEVELOPMENT1

ABSTRACT: In order to establish meaningful nutrient criteria, consideration must be given to the spatial variations in geographic phenomena that cause or reflect differences in nutrient concentrations in streams. Regional differences in stream nutrient concentrations were illustrated using stream data collected from 928 nonpoint‐source watersheds distributed throughout the country and sampled as part of the U.S. EPA National Eutrophication Survey (NES). Spatial patterns in the differences were compared and found to correspond with an a priori regional classification system based on regional patterns in landscape attributes associated with variation in nutrient concentrations. The classification consists of 14 regions composed of aggregations of the 84 U.S. EPA Level III Ecoregions. The primary distinguishing characteristics of each region and the factors associated with variability in water quality characteristics are presented. The use of the NES and many other extant monitoring data sets to develop regional reference conditions for nutrient concentrations in streams is discouraged on the basis of sample representation. The necessity that all sites used in such an effort be regionally representative and consistently screened for least possible impact is emphasized. These sampling issues are rigorously addressed by the U.S. EPA Environmental Monitoring and Assessment Program (EMAP). A case‐study, using EMAP data collected from the Central and Eastern Forested Uplands, demonstrates how regional reference conditions and draft nutrient criteria could be developed.     

Fate of coliform bacteria in composted beef cattle feedlot manure

The link between livestock production, manure management, and human health has received much public attention in recent years. Composting is often promoted as a means of sanitizing manure to ensure that pathogenic bacteria are not spread to a wider environment during land application. In a two-year study (1998 and 1999) in southern Alberta, we examined the fate of coliform bacteria during windrow composting of cattle (Bos taurus) manure from feedlot pens bedded with cereal straw or wood chips. Numbers of total coliforms (TC) and Escherichia coli declined as the composting period progressed. In 1998, TC levels (mean of both bedding types) were log10 7.86 cells g(-1) dry wt. for raw manure on Day 0, log10 3.38 cells g(-1) by Day 7, and log10 1.69 cells g(-1) by Day 14. More than 99.9% of TC and E. coli was eliminated in the first 7 d when average windrow temperatures ranged from 33.5 to 41.5 degrees C. The type of bedding did not influence the numbers of TC or E. coli. Dessication probably played a minor role in coliform elimination, since water loss was low (< 0.07 kg kg(-1)) in the first 7 d of composting. However, total aerobic heterotroph populations remained high (> 7.0 log10 CFU g(-1) dry wt., where CFU is colony forming units) throughout the composting period, possibly causing an antagonistic effect. Land application of compost, with its nondetectable levels of E. coli compared with raw manure, should minimize environmental risk in areas of intensive livestock production.     

Bermudagrass management in the Southern Piedmont USA: VI. Soil-profile inorganic nitrogen

Fate of applied N in forage-based agricultural systems is important to long-term production and environmental impacts. We evaluated the factorial combination of N fertilization targeted to supply 20 g N m 2 yr(-1) and harvest strategies on soil-profile inorganic N during the first 5 yr of 'Coastal' bermudagrass [Cynodon dactylon (L.) Pers.] management. Harvest strategy had much larger effects than fertilization strategy, most notably that soil-profile inorganic N was lower when hayed than under other systems. In the upper rooting zone (0- to 0.3-m depth), soil inorganic N (initially at 3.1 g m(-2)) remained unchanged during the 5 yr under unharvested and low and high grazing pressures (0.00 +/- 0.08 g m(-2) yr(-1)), but declined with haying (-0.25 g m(-2) yr(-1)). In the lower rooting zone (0.3- to 0.9-m depth), soil inorganic N (initially at 2.9 g m(-2)) accumulated with unharvested and low and high grazing pressure (0.64 +/- 0.20 g m(-2) yr(-1)), but remained unchanged with haying (-0.06 g m(-2) yr(-1)). Below the rooting zone (0.9- to 1.5-m depth), soil inorganic N (initially at 5.8 g m(-2)) increased with unharvested and high grazing pressure (0.34 +/- 0.03 g m(-2) yr(-1)), was unchanged with low grazing pressure (-0.10 g m(-2) yr(-1)), and declined with haying (-0.50 g m(-2) yr(-1)). Applied N appears to have been efficiently utilized by forage with subsequent sequestration into soil organic matter and little movement of inorganic N below the rooting zone (< 2% of applied N), irrespective of inorganic or organic fertilization strategy designed to supply sufficient N for high animal production from grazing.     

Bedding and seasonal effects on chemical and bacterial properties of feedlot cattle manure

Nutrients, soluble salts, and pathogenic bacteria in feedlot-pen manure have the potential to cause pollution of the environment. A three-year study (1998-2000) was conducted at a beef cattle (Bos taurus) feedlot in southern Alberta, Canada to determine the effect of bedding material [barley (Hordeum vulgare L.) straw versus wood chips] and season on the chemical and bacterial properties of pen-floor manure. Manure was sampled for chemical content (N, P, soluble salts, electrical conductivity, and pH) and populations of four groups of bacteria (Escherichia coli, total coliforms, and total aerobic heterotrophs at 27 and 39 degrees C). More chemical parameters of manure were significantly (P < or = 0.05) affected by season (SO4, Na, Mg, K, Ca, sodium adsorption ratio [SAR], total C, NO3-N, NH4-N, total P, and available P) than by bedding (K, pH, total C, C to N ratio, NH4-N, and available P). Bedding had no significant (P > 0.05) effect on the four bacterial groups whereas season affected all four groups. Numbers of E. coli and total coliforms (TC) were significantly higher by 1.72 to 2.02 log10 units in the summer than the other three seasons, which was consistent with a strong positive correlation of E. coli and TC with air temperature. The low ratio of bedding to manure in the pens was probably the major cause of the lack of significant bedding effects. Bedding material and seasonal timing of cleaning feedlot pens and land application of manure may be a potential tool to manage nutrients, soluble salts, and pathogens in manure.