The evolutionary continuum of limb function from early theropods to birds

The bipedal stance and gait of theropod dinosaurs evolved gradually along the lineage leading to birds and at some point(s), flight evolved. How and when did these changes occur? We review the evidence from neontology and palaeontology, including pectoral and pelvic limb functional morphology, fossil footprints/trackways and biomechanical models and simulations. We emphasise that many false dichotomies or categories have been applied to theropod form and function, and sometimes, these impede research progress. For example, dichotomisation of locomotor function into ‘non-avian’ and ‘avian’ modes is only a conceptual crutch; the evidence supports a continuous transition. Simplification of pelvic limb function into cursorial/non-cursorial morphologies or flexed/columnar poses has outlived its utility. For the pectoral limbs, even the classic predatory strike vs. flight wing-stroke distinction and separation of theropods into non-flying and flying—or terrestrial and arboreal—categories may be missing important subtleties. Distinguishing locomotor function between taxa, even with quantitative approaches, will always be fraught with ambiguity, making it difficult to find real differences if that ambiguity is properly acknowledged. There must be an ‘interpretive asymptote’ for reconstructing dinosaur limb function that available methods and evidence cannot overcome. We may be close to that limit, but how far can it be stretched with improved methods and evidence, if at all? The way forward is a combination of techniques that emphasises integration of neontological and palaeontological evidence and quantitative assessment of limb function cautiously applied with validated techniques and sensitivity analysis of unknown variables.     

Ecology of juvenile hawksbills (Eretmochelys imbricata) at Buck Island Reef National Monument, US Virgin Islands

Surveys of juvenile hawksbills around Buck Island Reef National Monument, US Virgin Islands from 1994 to 1999 revealed distributional patterns and resulted in a total of 75 individual hawksbill captures from all years; turtles ranged from 23.2 to 77.7 cm curved carapace length (CCL; mean 42.1 ± 12.3 cm SD). Juveniles concentrated where Zoanthid cover was highest. Length of time between recaptures, or presumed minimum site residency, ranged from 59 to 1,396 days (mean 620.8 ± 402.4 days SD). Growth rates for 23 juveniles ranged from 0.0 to 9.5 cm year^?1 (mean 4.1 ± 2.4 cm year^?1SD). Annual mean growth rates were non-monotonic, with the largest mean growth rate occurring in the 30–39 cm CCL size class. Gastric lavages indicated that Zoanthids were the primary food source for hawksbills. These results contribute to our understanding of juvenile hawksbill ecology and serve as a baseline for future studies or inventories of hawksbills in the Caribbean.     

Pleistocene diversification of the Pomacentrus coelestis species complex (Pisces: Pomacentridae): historical biogeography and species boundaries

Pleistocene eustatic changes in sea level are often invoked to explain genetic divergence among marine organisms. However, molecular phylogenies have revealed relatively few examples of speciation events dating to the Pleistocene. We present a species-level hypothesis of the timing of evolution for the Pomacentrus coelestis species complex (Pomacentridae), based on the nuclear S7 intron and the mitochondrial Cytb gene, and reconstruct ancestral range distributions across the timetree. Ancestral range reconstruction suggests the complex originated in the Coral Triangle and East Indian Ocean, with subsequent range expansion outward from this region. We suggest that land barriers to dispersal (e.g., Indo-Pacific barrier) may be responsible for the divergence between Indian (P. alleni, P. similis, P. caeruleopunctatus, and P. caeruleus) and Pacific (P. micronesicus, P. auriventris, and P. coelestis) species groups, and subsequent isolation by Pleistocene sea-level fluctuations in certain areas of the Coral Triangle (glacial refugia) may play an important role in the diversification of this species complex. Additionally, our analyses show cryptic lineages within P. micronesicus and highlight the need for comprehensive sampling within and among species to reveal recent speciation events.     

Conceptual Framework of Connectivity for a National Agroecosystem Model Based on Transport Processes and Management Practices

There is a critical need for a national agroecosystem model for conservation policy and environmental planning, driven by issues including harmful algal blooms, water scarcity, flooding, and other weather‐related extremes. In this study, we illustrate the feasibility of a national agroecosystem model that will downscale processes to individual fields and first‐order channels. We propose to conceptually divide the conterminous United States (U.S.) into process domains as a framework for simulating processes and management at relevant scales. Specifically, we are proposing five domains: field (1–50 ha), transition (0.2–2.0 km²), headwater (1–15 km²), tributaries (15–150 km²), and main river (>150 km²). The proposed conceptual framework hydrologically connects fields across the U.S. using the National Hydrography Dataset (NHDPlus version 2). Parameterizing the Soil and Water Assessment Tool for the national agroecosystem model resulted in 4,880,000 agricultural fields, 2,250,000 non‐agricultural hydrologic response units, and 7,130,000 transition, 1,610,000 headwater, 591,000 tributary, and 432,400 main channels. Application of this framework was shown for Hydrologic Unit Code 07120002 in central Illinois and Indiana to demonstrate the feasibility of the approach using data that is readily available across the U.S. The new connectivity framework has the potential to dramatically improve national conservation and environmental assessments performed by U.S. Department of Agriculture and U.S. Environmental Protection Agency.     

The values and vulnerabilities of ‘Star Wars Island’: exploring tensions in the sustainable management of the Skellig Michael World Heritage Site

This paper explores challenges in reconciling the cultural, economic and ecological pillars of the sustainable development concept. It does so by examining how conflicts in the management of an island off the Irish coast called Skellig Michael, which has been internationally designated for its significant cultural and ecological attributes, have been intensified by: (a) increasing tourist numbers; (b) a re-framing of the site’s identity and (c) changing visitor motivations. These have resulted from the amplified attention the island has received following the release of Star Wars: The Force Awakens and The Last Jedi in which it features prominently. Following a critical identification and discussion of the fault lines between different stakeholders involved in the conservation and use of the island, the paper advances a roadmap for action to help resolve animosity in the governance of the site and facilitate its sustainable management in the context of changing visitor numbers and profiles.     

AUTOMATED METHODS FOR ESTIMATING BASEFLOW AND GROUND WATER RECHARGE FROM STREAMFLOW RECORDS1

ABSTRACT: To quantify and model the natural ground water recharge process, six sites located in the midwest and eastern United States where previous water balance observations had been made were compared to computerized techniques to estimate: (1) base flow and (2) ground water recharge. Results from an existing automated digital filter technique for separating baseflow from daily streamflow records were compared to baseflow estimates made in the six water balance studies. Previous validation of automated baseflow separation techniques consisted only of comparisons with manual techniques. In this study, the automated digital filter technique was found to compare well with measured field estimates yielding a monthly coefficient of determination of 0.86. The recharge algorithm developed in this study is an automated derivation of the Rorabaugh hydrograph recession curve displacement method that utilizes daily streamflow. Comparison of annual recharge from field water balance measurements to those computed with the automated recession curve displacement method had coefficients of determination of 0.76 and predictive efficiencies of 71 percent. Monthly estimates showed more variation and are not advocated for use with this method. These techniques appear to be fast, reproducible methods for estimating baseflow and annual recharge and should be useful in regional modeling efforts and as a quick check on mass balance techniques for shallow water table aquifers.     

Evaluation of alternative filter media for particulate matter emission testing of residential wood heating devices

The performance of Teflon-coated glass fiber filter media (Pallflex Emfab TX40) is evaluated for particulate matter (PM) sampling of residential wood heating devices in a dilution tunnel. Thirty samples of varying duration and PM loading and concentration were collected from an U.S. Environmental Protection Agency (EPA) Method 28 dilution tunnel using dual Method 5G sample trains with untreated glass fiber and Emfab filters. Filters were weighed soon after the end of sampling and again the next day after equilibration at 35% relative humidity (RH). PM concentrations from both types of filters agreed very well with 1-day equilibration, demonstrating that Emfab filters are appropriate for use in measuring PM from residential wood burning appliances in a dilution tunnel and have performance equal to or better than the glass fiber filter media. Agreement between filter media without equilibration was erratic, with PM from glass fiber filter samples varying from slightly less than the Emfab samples to as much as 2.8 times higher. Some of the glass fiber filters lost substantial mass with equilibration, with the highest percent loss at lower filter mass loadings. Mass loss for Emfab samples was a small percentage of the mass and very consistent across the range of mass loadings. Taken together, these results may indicate water uptake on the glass fiber media that is readily removed with 1-day equilibration at moderate RH conditions.

Implications: EPA regulations now allow the use of either glass fiber or Teflon filter media for wood appliance PM emission testing. Teflon filter media minimizes the potential for acid-gas PM artifacts on glass fiber filters; this is important as EPA moves toward the use of locally sourced cordwood for testing that may have higher sulfur content. This work demonstrates that the use of Teflon-coated glass fiber filters can give similar PM measurement results to glass fiber filters after 1 day of equilibration. With no equilibration, measured PM from glass fiber filters was usually higher than from Teflon-coated glass fiber filters.     

Development and Testing of a Physically Based Model of Streambank Erosion for Coupling with a Basin‐Scale Hydrologic Model SWAT

A comprehensive streambank erosion model based on excess shear stress has been developed and incorporated in the hydrological model Soil and Water Assessment Tool (SWAT). It takes into account processes such as weathering, vegetative cover, and channel meanders to adjust critical and effective stresses while estimating bank erosion. The streambank erosion model was tested for performance in the Cedar Creek watershed in north‐central Texas where streambank erosion rates are high. A Rapid Geomorphic field assessment (RAP‐M) of the Cedar Creek watershed was done adopting techniques developed by the Natural Resources Conservation Service (NRCS), and the stream segments were categorized into various severity classes. Based on the RAP‐M field assessment, erosion pin sites were established at seven locations within the severely eroding streambanks of the watershed. A Monte Carlo simulation was carried out to assess the sensitivity of different parameters that control streambank erosion such as critical shear stress, erodibility, weathering depth, and weathering duration. The sensitive parameters were adjusted and the model was calibrated based on the bank erosion severity category identified by the RAP‐M field assessment. The average observed erosion rates were in the range 25‐367 mm year^?1. The SWAT model was able to reasonably predict the bank erosion rates within the range of variability observed in the field (R² = 0.90; E = 0.78). Editor's note : This paper is part of the featured series on SWAT Applications for Emerging Hydrologic and Water Quality Challenges. See the February 2017 issue for the introduction and background to the series.