4-Methylsterols in recent lacustrine sediments: Terrestrial,planktonic or some other origin?

Sediment cores from oxygen depleted zones of lake Léman (lake of Geneva) and from anoxic surface sediment from Voua de la Motte (France) were analyzed for their sterol compositions. 4-methylstanols were found to be major sterols in Motte lake sediment, which is rich in organic matter. In lake Léman, the relative abundances of the same 4-methylstanols increase with the depth in the core, but they remain always minor compounds. An extensive search for a possible external source for these compounds included the analysis of water, of the plankton and of the surrounding soil material. All these results, along with those of an in situ incubation experiment, give strong evidence in favor of their in situ bacterial biosynthesis.     

Comparison of metastable atom bombardment and electron capture negative ionization for the analysis of polychloroalkanes

A new method for quantifying C10-C13 polychloroalkanes (PCAs or chloroparaffins, CPs) in environmental samples using metastable atom bombardment ionization (MAB) and high resolution mass spectrometry is presented. Contrary to electron capture negative ionization (ECNI), MAB can produce spectra for molecules having a low number of chlorine atoms. These molecules are present in commercial PCAs and are responsible for a large fraction of the total PCA concentration in water samples analysed. Using ECNI or MAB, no molecular ion can be seen in the spectra. ECNI spectra contain important peaks corresponding to [M-Cl]- and [M-HCl]-* while the base peak in MAB spectra is [M-Cl]+ with no [M-HCl]+* present. The mass range for C10-C13 CPs is very large and scanning the masses for all the compounds involved would lead to a loss of sensitivity. Two chromatographic analysis are thus performed using high resolution selective ion monitoring with only a limited number of masses recorded per run. To reduce analysis time, a short capillary column is used. Application of this method to the analysis of high-volumes water samples (dissolved and particulates portions separately) from the St. Lawrence river near Quebec City using MAB is presented. Contribution of molecules with a low chlorine content in the samples account for between 10% and 46% to the total concentration. Congeners distribution between the different fractions indicates that molecules with a low number of carbon atoms are preferentially retained on the particulates. Within a carbon number group, there is a slight tendency to accumulate molecules with a high number of chlorine atoms in the dissolved fraction.     

Greenhouse gas mitigation and offset options for suckler cow farms: an economic comparison for the Swiss case

We assessed the economic suitability of 4 greenhouse gas (GHG) mitigation options and one GHG offset option for an improvement of the GHG balance of a representative Swiss suckler cow farm housing 35 Livestock units and cultivating 25 ha grassland. GHG emissions per kilogram meat in the economic optimum differ between the production systems and range from 18 to 21.9 kg CO₂-eq./kg meat. Only GHG offset by agroforestry systems showed the potential to significantly reduce these emissions. Depending on the production system agroforestry systems could reduce net GHG emissions by 66% to 7.3 kg CO₂-eq./kg meat in the most intensive system and by 100% in the most extensive system. In this calculation a carbon sequestration rate of 8 t CO₂/ha/year was assumed. The potential of a combination of the addition of lipids to the diet, a cover of the slurry tank and the application of nitrification inhibitors only had the potential to reduce GHG emissions by 12% thereby marginal abatement costs are increasing much faster than for agroforestry systems. A reduction of the GHG emissions to 7.5 kg CO₂-eq./kg meat—possible with agroforestry only—raised costs between 0.03 CHF/kg meat and 0.38 CHF/kg meat depending on the production system and the state of the system before the reduction. If GHG emissions were reduced maximally average costs ranged between 0.37 CHF/kg meat, if agroforestry had the potential to reduce net GHG emissions to 0 kg CO₂-eq., to 1.17 CHF/kg meat if also other options had to be applied.     

Crinoid phylogeny: a preliminary analysis (Echinodermata: Crinoidea)

We describe the first molecular and morphological analysis of extant crinoid high-level inter-relationships. Nuclear and mitochondrial gene sequences and a cladistically coded matrix of 30 morphological characters are presented, and analysed by phylogenetic methods. The molecular data were compiled from concatenated nuclear-encoded 18S rDNA, internal transcribed spacer 1, 5.8S rDNA, and internal transcribed spacer 2, together with part of mitochondrial 16S rDNA, and comprised 3,593 sites, of which 313 were parsimony-informative. The molecular and morphological analyses include data from the bourgueticrinid Bathycrinus; the antedonid comatulids Dorometra and Florometra; the cyrtocrinids Cyathidium, Gymnocrinus, and Holopus; the isocrinids Endoxocrinus, and two species of Metacrinus; as well as from Guillecrinus and Caledonicrinus, whose ordinal relationships are uncertain, together with morphological data from Proisocrinus. Because the molecular data include indel-rich regions, special attention was given to alignment procedure, and it was found that relatively low, gene-specific, gap penalties gave alignments from which congruent phylogenetic information was obtained from both well-aligned, indel-poor and potentially misaligned, indel-rich regions. The different sequence data partitions also gave essentially congruent results. The overall direction of evolution in the gene trees remains uncertain: an asteroid outgroup places the root on the branch adjacent to the slowly evolving isocrinids (consistent with palaeontological order of first appearances), but maximum likelihood analysis with a molecular clock places it elsewhere. Despite lineage-specific rate differences, the clock model was not excluded by a likelihood ratio test. Morphological analyses were unrooted. All analyses identified three clades, two of them generally well-supported. One well-supported clade (BCG) unites Bathycrinus and Guillecrinus with the representative (chimaeric) comatulid in a derived position, suggesting that comatulids originated from a sessile, stalked ancestor. In this connection it is noted that because the comatulid centrodorsal ossicle originates ontogenetically from the column, it is not strictly correct to describe comatulids as unstalked crinoids. A second, uniformly well-supported clade contains members of the Isocrinida, while the third clade contains Gymnocrinus, a well-established member of the Cyrtocrinida, together with the problematic taxon Caledonicrinus, currently classified as a bourgueticrinid. Another cyrtocrinid, Holopus, joins this clade with only weak molecular, but strong morphological support. In one morphological analysis Proisocrinus is weakly attached to the isocrinid clade. Only an unusual, divergent 18S rDNA sequence was obtained from the morphologically strange cyrtocrinid Cyathidium. Although not analysed in detail, features of this sequence suggested that it may be a PCR artefact, so that the apparently basal position of this taxon requires confirmation. If not an artefact, Cyathidium either diverged from the crinoid stem much earlier than has been recognised hitherto (i.e., it may be a Palaeozoic relic), or it has an atypically high rate of molecular evolution.Electronic Supplementary Material Supplementary material is available in the online version of this article at Communicated by J.P. Thorpe, Port Erin     

Drought can offset potential water use efficiency of forest ecosystems from rising atmospheric CO2

Increasing atmospheric CO₂ is both leading to climate change and providing a potential fertilisation effect on plant growth. However, southern Australia has also experienced a significant decline in rainfall over the last 30 years, resulting in increased vegetative water stress. To better understand the dynamics and responses of Australian forest ecosystems to drought and elevated CO₂, the magnitude and trend in water use efficiency (WUE) of forests, and their response to drought and elevated CO₂ from 1982 to 2014 were analysed, using the best available model estimates constrained by observed fluxes from simulations with fixed and time-varying CO₂. The ratio of gross primary productivity (GPP) to evapotranspiration (ET) (WUEe) was used to identify the ecosystem scale WUE, while the ratio of GPP to transpiration (Tr) (WUEc) was used as a measure of canopy scale WUE. WUE increased significantly in northern Australia (p < 0.001) for woody savannas (WSA), whereas there was a slight decline in the WUE of evergreen broadleaf forests (EBF) in the southeast and southwest of Australia. The lag of WUEc to drought was consistent and relatively short and stable between biomes (≤3 months), but notably varied for WUEe, with a long time-lag (mean of 10 months). The dissimilar responses of WUEe and WUEc to climate change for different geographical areas result from the different proportion of Tr in ET. CO₂ fertilization and a wetter climate enhanced WUE in northern Australia, whereas drought offset the CO₂ fertilization effect in southern Australia.     

A development in energy flow/barrier analysis

In this paper, the occupational accidents and their effects on people are modeled. The basis of energy flow/barrier analysis is used to define an accident as the impact of a hazardous agent on a target, as a result of failure of control and protective barriers. This definition is enhanced to include serial and parallel barriers and to distinguish energy barriers from target barriers. The barrier attributes are defined and used to create a quantitative scenario-building model. The probability and severity of various accidents are estimated, by studying barrier reliability and efficiency. This approach is used to develop and simulate accident scenarios and to calculate their consequences. This model can be used in complex systems for analyzing the risk and estimating the importance of barriers.     

Development of a SWAT Patch for Better Estimation of Sediment Yield in Steep Sloping Watersheds1

Abstract: The watershed scale Soil and Water Assessment Tool (SWAT) model divides watersheds into smaller subwatersheds for simulation of rainfall‐runoff and sediment loading at the field level and routing through stream networks. Typically, the SWAT model first needs to be calibrated and validated for accurate estimation through adjustment of sensitive input parameters (i.e., Curve Number values, USLE P, slope and slope‐length, and so on). However, in some instances, SWAT‐simulated results are greatly affected by the watershed delineation and Digital Elevation Models (DEM) cell size. In this study, the SWAT ArcView GIS Patch II was developed for steep sloping watersheds, and its performance was evaluated for various threshold values and DEM cell size scenarios when delineating subwatersheds using the SWAT model. The SWAT ArcView GIS Patch II was developed using the ArcView GIS Avenue program and Spatial Analyst libraries. The SWAT ArcView GIS Patch II improves upon the SWAT ArcView GIS Patch I because it reflects the topographic factor in calculating the field slope‐length of Hydrologic Response Units in the SWAT model. The simulated sediment value for 321 subwatersheds (watershed delineation threshold value of 25 ha) is greater than that for 43 subwatersheds (watershed delineation threshold value of 200 ha) by 201% without applying the SWAT ArcView GIS Patch II. However, when the SWAT ArcView GIS Patch II was applied, the difference in simulated sediment yield decreases for the same scenario (i.e., difference in simulated sediment with 321 subwatersheds and 43 subwatersheds) was 12%. The simulated sediment value for DEM cell size of 50 m is greater than that for DEM cell size of 10 m by 19.8% without the SWAT ArcView GIS Patch II. However, the difference becomes smaller (3.4% difference) between 50 and 10 m with the SWAT ArcView GIS Patch II for the DEM scenarios. As shown in this study, the SWAT ArcView GIS Patch II can reduce differences in simulated sediment values for various watershed delineation and DEM cell size scenarios. Without the SWAT ArcView GIS Patch II, variations in the SWAT‐simulated results using various watershed delineation and DEM cell size scenarios could be greater than those from input parameter calibration. Thus, the results obtained in this study show that the SWAT ArcView GIS Patch II should be used when simulating hydrology and sediment yield for steep sloping watersheds (especially if average slope of the subwatershed is >25%) for more accurate simulation of hydrology and sediment using the SWAT model. The SWAT ArcView GIS Patch II is available at http://www.EnvSys.co.kr/~swat for free download.