Bacteria transport and deposition under unsaturated conditions: the role of the matrix grain size and the bacteria surface protein

Unsaturated (80% water saturated) packed column experiments were conducted to investigate the influence of grain size distribution and bacteria surface macromolecules on bacteria (Rhodococcus rhodochrous) transport and deposition mechanisms. Three sizes of silica sands were used in these transport experiments, and their median grain sizes were 607, 567, and 330 microm. The amount of retained bacteria increased with decreasing sand size, and most of the deposited bacteria were found adjacent to the column inlet. The deposition profiles were not consistent with predictions based on classical filtration theory. The experimental data could be accurately characterized using a mathematical model that accounted for first-order attachment, detachment, and time and depth-dependent straining processes. Visual observations of the bacteria deposition as well as mathematical modelling indicated that straining was the dominant mechanism of deposition in these sands (78-99.6% of the deposited bacteria), which may have been enhanced due to the tendency of this bacterium to form aggregates. An additional unsaturated experiment was conducted to better deduce the role of bacteria surface macromolecules on attachment and straining processes. In this case, the bacteria surface was treated using a proteolitic enzyme. This technique was assessed by examining the Fourier-transform infrared spectrum and hydrophobicity of untreated and enzyme treated cells. Both of these analytical procedures demonstrated that this enzymatic treatment removed the surface proteins and/or associated macromolecules. Transport and modelling studies conducted with the enzyme treated bacteria, revealed a decrease in attachment, but that straining was not significantly affected by this treatment.     

International trade in meat: the tip of the pork chop

This paper provides an original account of global land, water, and nitrogen use in support of industrialized livestock production and trade, with emphasis on two of the fastest-growing sectors, pork and poultry. Our analysis focuses on trade in feed and animal products, using a new model that calculates the amount of "virtual" nitrogen, water, and land used in production but not embedded in the product. We show how key meat-importing countries, such as Japan, benefit from "virtual" trade in land, water, and nitrogen, and how key meat-exporting countries, such as Brazil, provide these resources without accounting for their true environmental cost. Results show that Japan's pig and chicken meat imports embody the virtual equivalent of 50% of Japan's total arable land, and half of Japan's virtual nitrogen total is lost in the US. Trade links with China are responsible for 15% of the virtual nitrogen left behind in Brazil due to feed and meat exports, and 20% of Brazil's area is used to grow soybean exports. The complexity of trade in meat, feed, water, and nitrogen is illustrated by the dual roles of the US and The Netherlands as both importers and exporters of meat. Mitigation of environmental damage from industrialized livestock production and trade depends on a combination of direct-pricing strategies, regulatory approaches, and use of best management practices. Our analysis indicates that increased water- and nitrogen-use efficiency and land conservation resulting from these measures could significantly reduce resource costs.     

Valuing freshwater salmon habitat on the west coast of Canada

Changes in land use can potentially reduce the quality of fish habitat and affect the economic value of commercial and sport fisheries that rely on the affected stocks. Parks and protected areas that restrict land-use activities provide benefits, such as ecosystem services, in addition to recreation and preservation of wildlife. Placing values on these other benefits of protected areas poses a major challenge for land-use planning. In this paper, we present a framework for valuing benefits for fisheries from protecting areas from degradation, using the example of the Strait of Georgia coho salmon fishery in southern British Columbia, Canada. Our study improves upon previous methods used to value fish habitat in two major respects. First, we use a bioeconomic model of the coho fishery to derive estimates of value that are consistent with economic theory. Second, we estimate the value of changing the quality of fish habitat by using empirical analyses to link fish population dynamics with indices of land use in surrounding watersheds. In our example, we estimated that the value of protecting habitat ecosystem services is C$0.93 to C$2.63 per ha of drainage basin or about C$1322 to C$7010 per km of salmon stream length (C$1.00=US$0.71). Sensitivity analyses suggest that these values are relatively robust to different assumptions, and if anything, are likely to be minimum estimates. Thus, when comparing alternative uses of land, managers should consider ecosystem services from maintaining habitat for productive fish populations along with other benefits of protected areas.     

Release of Cryptosporidium and Giardia from dairy cattle manure: physical factors

Various physical factors affecting the release rate of naturally occurring Cryptosporidium parvum oocysts and Giardia duodenalis cysts from dairy manure disks to sprinkled water were studied. The investigated factors included temperature (5 or 23 degrees C), manure type (calf manure, a 50% calf and 50% cow manure mixture, and a 10% calf and 90% cow manure mixture), and water application method (mist or drip) and flow rate. Effluent concentrations of manure and (oo)cysts were always several orders of magnitude below their initial concentration in the manure, decreased gradually, and exhibited persistent concentration tailing. Release of manure and (oo)cysts were found to be related by a constant factor, the so-called release efficiency of (oo)cysts. A previously developed (oo)cyst release model that included these release efficiencies provided a satisfactory simulation of the observed release. An effect of temperature on the release of manure and (oo)cysts was not apparent. The manure and (oo)cyst release rates from cow manure decreased faster than those from calf manure, and (oo)cyst release efficiencies from cow manure were higher than those from calf manure. In comparison with mist application, dripping water resulted in higher release rates of manure and (oo)cysts and in higher (oo)cyst release efficiencies due to the increased mechanical forces associated with droplet impact. Mist application at a higher flow rate resulted in faster release, but did not affect the (oo)cyst release efficiencies. The data and modeling approach described herein provide insight and an enhanced ability to describe the influence of physical factors on (oo)cyst release.     

Toward an ecological classification of soil bacteria

Although researchers have begun cataloging the incredible diversity of bacteria found in soil, we are largely unable to interpret this information in an ecological context, including which groups of bacteria are most abundant in different soils and why. With this study, we examined how the abundances of major soil bacterial phyla correspond to the biotic and abiotic characteristics of the soil environment to determine if they can be divided into ecologically meaningful categories. To do this, we collected 71 unique soil samples from a wide range of ecosystems across North America and looked for relationships between soil properties and the relative abundances of six dominant bacterial phyla (Acidobacteria, Bacteroidetes, Firmicutes, Actinobacteria, alpha-Proteobacteria, and the beta-Proteobacteria). Of the soil properties measured, net carbon (C) mineralization rate (an index of C availability) was the best predictor of phylum-level abundances. There was a negative correlation between Acidobacteria abundance and C mineralization rates (r2 = 0.26, P < 0.001), while the abundances of beta-Proteobacteria and Bacteroidetes were positively correlated with C mineralization rates (r2 = 0.35, P < 0.001 and r2 = 0.34, P < 0.001, respectively). These patterns were explored further using both experimental and meta-analytical approaches. We amended soil cores from a specific site with varying levels of sucrose over a 12-month period to maintain a gradient of elevated C availabilities. This experiment confirmed our survey results: there was a negative relationship between C amendment level and the abundance of Acidobacteria (r2 = 0.42, P < 0.01) and a positive relationship for both Bacteroidetes and beta-Proteobacteria (r2 = 0.38 and 0.70, respectively; P < 0.01 for each). Further support for a relationship between the relative abundances of these bacterial phyla and C availability was garnered from an analysis of published bacterial clone libraries from bulk and rhizosphere soils. Together our survey, experimental, and meta-analytical results suggest that certain bacterial phyla can be differentiated into copiotrophic and oligotrophic categories that correspond to the r- and K-selected categories used to describe the ecological attributes of plants and animals. By applying the copiotroph-oligotroph concept to soil microorganisms we can make specific predictions about the ecological attributes of various bacterial taxa and better understand the structure and function of soil bacterial communities.     

Nonadditive effects of leaf litter species diversity on breakdown dynamics in a detritus-based stream

Since species loss is predicted to be nonrandom, it is important to understand the manner in which those species that we anticipate losing interact with other species to affect ecosystem function. We tested whether litter species diversity, measured as richness and composition, affects breakdown dynamics in a detritus-based stream. Using full-factorial analyses of single- and mixed-species leaf packs (15 possible combinations of four dominant litter species; red maple [Acer rubrum], tulip poplar [Liriodendron tulipifera], chestnut oak [Quercus prinus], and rhododendron [Rhododendron maximum]), we tested for single-species presence/absence (additive) or species interaction (nonadditive) effects on leaf pack breakdown rates, changes in litter chemistry, and microbial and macroinvertebrate biomass. Overall, we found significant nonadditive effects of litter species diversity on leaf pack breakdown rates, which were explained both by richness and composition. Leaf packs containing higher litter species richness had faster breakdown rates, and antagonistic effects of litter species composition were observed when any two or three of the four litter species were mixed. Less-consistent results were obtained with respect to changes in litter chemistry and microbial and macroinvertebrate biomass. Our results suggest that loss of litter species diversity will decrease species interactions involved in regulating ecosystem function. To that end, loss of species such as eastern hemlock (Tsuga canadensis) accompanied by predicted changes in riparian tree species composition in the southeastern United States could have nonadditive effects on litter breakdown at the landscape scale.     

Establishment of permit limits for mill effluent

Various governmental regulatory agencies are responsible for establishing regulations on the discharge of chlorinated organic compounds from pulp and paper mills. The procedures for setting permit limits are the basic topic of this article. Different methods of determining permit limits are set forth and discussed in a number of references, including documents of the Environmental Protection Agency. This paper discusses in detail the application of one particular methodology—the lognormal model approach. In this paper we utilize a real data set and include the necessary calculations required to set up permit limits. The basic tenets of the permit process are such that if limits are set too low, operators who are in full regulatory compliance will still be frequently cited, and if limits are set too high, operators who are not in compliance will seldom if ever be cited. Thus there is a great need for these effluent limits to be determined with great care, both to protect the environment receiving the wastewater and the industry producing the wastewater.     

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

Ecosystems worldwide are receiving increasing amounts of reactive nitrogen (N) through anthropogenic activities. Although the effects of increased N inputs on plant communities have been reasonably well studied, few comparable studies have examined impacts on whole soil bacterial communities, though they play critical roles in ecosystem functioning. We sampled soils from two long-term ecological research (LTER) experimental N gradients, both of which have been amended with NH4NO3; a grassland at Cedar Creek (27 years of N additions) and an agricultural field at Kellogg Biological Station (8 years of N additions). By examining shifts in bacterial communities across these contrasting ecosystem types, we could test competing hypotheses about the direct and indirect factors that might drive bacterial responses to elevated N inputs. Bacterial community structure was highly responsive to N additions. We observed predictable and consistent changes in the structure of the bacterial communities across both ecosystem types. Our results suggest that bacterial communities across these gradients are more structured by N and/or soil carbon availability than by shifts in the plant community or soil pH associated with the elevated nitrogen inputs. In contrast to the pronounced shifts in bacterial community composition and in direct contrast to the patterns often observed in plant communities, increases in N availability did not have consistent effects on the richness and diversity of soil bacterial communities.     

Regulating overabundant ungulate populations: an example for elk in Rocky Mountain National Park, Colorado

In many areas of the world, populations of native ungulates have become so abundant that they are believed to be harming vegetation and disrupting ecosystem function. Methods for controlling overabundance populations include culling animals from the population and controlling fertility using contraceptives. However, understanding the feasibility these alternatives requires insight into their long-term effects on populations. We constructed a simulation model to evaluate options for regulating elk populations in and around Rocky Mountain National Park and used the model to compare different treatment options. Methods were evaulated with respect to the time required to reduce the population to a target level, the number of animals treated and/or culled and the risk of extinction. We contrasted culling with lifetime-effect contraceptives and yearlong contraceptives. Lifetime contraceptives required treating the fewest animals to maintain the population at desired targets. However, this approach also causes the greatest population variability and potential risk of extinction. Yearlong contraceptives required treatment of dramatically more animals but had essentially no extinction risk whereas culling produced intermediate levels of both extinction risk and number of animals treated. These results characterize the risks and benefits of alternative control strategies for overabundant wildlife. They emerge from a modeling approach that can be broadly useful in helping managers in choose between alternatives for regulating overabundant wildlife.