Using circuit theory to model connectivity in ecology, evolution, and conservation

Connectivity among populations and habitats is important for a wide range of ecological processes. Understanding, preserving, and restoring connectivity in complex landscapes requires connectivity models and metrics that are reliable, efficient, and process based. We introduce a new class of ecological connectivity models based in electrical circuit theory. Although they have been applied in other disciplines, circuit-theoretic connectivity models are new to ecology. They offer distinct advantages over common analytic connectivity models, including a theoretical basis in random walk theory and an ability to evaluate contributions of multiple dispersal pathways. Resistance, current, and voltage calculated across graphs or raster grids can be related to ecological processes (such as individual movement and gene flow) that occur across large population networks or landscapes. Efficient algorithms can quickly solve networks with millions of nodes, or landscapes with millions of raster cells. Here we review basic circuit theory, discuss relationships between circuit and random walk theories, and describe applications in ecology, evolution, and conservation. We provide examples of how circuit models can be used to predict movement patterns and fates of random walkers in complex landscapes and to identify important habitat patches and movement corridors for conservation planning.     

Marine protected areas for deepwater fish populations: an evaluation of their effects in Hawai’i

The success of marine protected areas (MPAs) as a tool for conservation and fisheries management has been well documented. However, these results have typically been seen in shallow water systems and questions remain whether this management strategy could be successfully applied to deepwater ecosystems. Our objectives were to determine the efficacy of four deepwater MPAs called bottomfish restricted fishing areas (BRFAs), with various time spans of protection, monitored at depths between 90 and 310 m from 2007 to 2011 for six species of deepwater snapper and one grouper harvested in the Main Hawaiian Islands. Our results suggested that the duration of protection influenced reserve effects, particularly for target species. Mean fish length, and in some cases abundance, increased for one or more of the most economically important target species inside nearly all tested BRFAs. In addition, more mature fish were seen inside the BRFA with the longest duration of protection (~14 years); species richness increased outside this area while inside it remained the same. Here, we provide the first evidence that deepwater MPAs can have positive effects on deepwater species and that many protection effects were consistent with results found in shallow water ecosystems. While these findings are novel, additional data over greater temporal scales will be necessary to determine whether these trends will continue and if others will become important over time.     

Association of reproductive traits with captive- versus wild-sourced birds in trade

The wildlife trade is a billion-dollar global business, involving millions of people, thousands of species, and hundreds of millions of individual organisms. Unravelling whether trade targets reproductively distinct species and whether this preference varies between captive- and wild-sourced species is a crucial question. We used a comprehensive list of all bird species traded, trade listings and records kept in compliance with the Convention on International Trade in Endangered Species (CITES), and a suite of avian reproductive parameters to examine whether wildlife trade is associated with particular facets of life history and to examine the association between life-history traits and captive- and wild-sourced traded volumes over time. Across all trade, CITES listing, and CITES trade, large birds were more likely to be traded and listed, but their longevity and age at maturity were not associated with CITES listing or trade. We found species across almost the full range of trait values in both captive and wild trade between 2000 and 2020. Captive trade volumes clearly associated with relatively longer lived and early-maturing species; these associations remained stable and largely unchanged over time. Trait–volume associations in wild-sourced trade were more uncertain. Only body mass had a clear association, and it varied from negative to positive over time. Although reproductive traits were important in captive-sourced trade, species-level variation dominated trade, with even congeneric species varying greatly in volume despite similar traits. The collection and incorporation of trait data into sustainability assessments of captive breeding facilities are crucial to ensure accurate quotas and guard against laundering.     

Sorption of atmospheric ammonia by soil and perennial grass downwind from two large cattle feedlots

Livestock manure in feedlots releases ammonia (NH3), which can be sorbed by nearby soil and plants. Ammonia sorption by soil and its effects on soil and perennial grass N contents downwind from two large cattle feedlots in Alberta, Canada were investigated from June to October 2002. Atmospheric NH3 sorption was measured weekly by exposing air-dried soil at sampling points downwind along 1700-m transects. The amount of NH3 sorbed by soil was 2.60 to 3.16 kg N ha(-1) wk(-1) near the source, declining to about 0.25 kg N ha(-1) wk(-1) 1700 m downwind, reflecting diminishing atmospheric NH3 concentrations. Ammonia sorption at a control site away from NH3 sources was much lower: 0.085 kg N ha(-1) wk(-1). Based on these rates, about 19% of emitted NH3 is sorbed by soil within 1700 m downwind of feedlots. Field soil and grass samples from the transect lines were analyzed for total N (TN) and KCl-extractable N content (soil only). Nitrate N content in field soil followed a trend similar to that of atmospheric NH3 sorption. Soil TN contents, because of high background levels, showed no clear pattern. The TN content of grass, downwind of the newer feedlot, followed a pattern similar to that of NH3 sorption; downwind of the older feedlot, grass TN was correlated to soil TN. Our results suggest that atmospheric NH3 from livestock operations can contribute N to local soil and vegetation, and may need to be considered when determining fertilizer rates and assessing environmental impact.     

Comment on “A Reanalysis of Long-Term Surface Air Temperature Trends in New Zealand”

de Freitas et al. (2015) (henceforth dFDB) report a trend of 0.28 °C per century over the period 1909–2009 for New Zealand land surface temperatures, from their reanalysis of a composite of seven long-term records. This is much lower than the warming trend of about 0.9 °C per century reported previously by other researchers and much smaller than trends estimated from independent sea surface temperature data from the surrounding region. We show these differences result primarily from the way inhomogeneities in temperature time series at individual stations due to site or instrument changes are identified and adjusted for in the dFDB paper. The adjustments reported in that paper are based on a method designed by one of us (Salinger), but use only a short (1–2-year) overlap period with comparison stations and consider only inhomogeneities in monthly mean (rather than monthly maximum and minimum) temperatures. This leads to underestimates of the statistical significance of individual temperature discontinuities and hence rejection of many valid adjustments. Since there was a systematic tendency for the seven-station sites to be relocated to colder locations as the early half of the twentieth century progressed, this rejection of valid adjustments produces an artificially low rate of warming. We therefore disagree with the trend calculations in the dFDB paper and consider there is no reason to reject the previous estimates of around 0.9 °C warming per century.     

Demonstrating the In Situ Biodegradation Potential of Phenol Using Bio‐Sep® Bio‐Traps® and Stable Isotope Probing

The effect of phenol concentration on phenol biodegradation at an industrial site in the south of Wales, United Kingdom, was investigated using standard Bio‐Sep^® Bio‐Traps^® and Bio‐Traps^® coupled with stable isotope probing (SIP). Unlike many ¹³C‐amendments used in SIP studies (such as hydrocarbons) that physically and reversibly adsorb to the activated carbon component of the Bio‐Sep^® beads, phenol is known to irreversibly chemisorb to activated carbon. Bio‐Traps^® were deployed for 32 days in nine site groundwater monitoring wells representing a wide range of phenol concentrations. Bio‐Traps^® amended with ¹³C‐phenol were deployed together with non‐amended Bio‐Traps® in three wells. Quantitative polymerase chain reaction (qPCR) analysis of Bio‐Traps^® post‐deployment indicated an inhibitory effect of increasing phenol concentration on both total eubacteria and aerobic phenol‐utilizing bacteria as represented by the concentration of phenol hydroxylase gene. Despite the chemisorption of phenol to the Bio‐Sep^® beads, activated carbon stable isotope analysis showed incorporation of ¹³C into biomass and dissolved inorganic carbon (DIC) in each SIP Bio‐Trap^® indicating that chemisorbed amendments are bioavailable. However, there was a clear effect of phenol concentration on ¹³C incorporation in both biomass and DIC confirming phenol inhibition. These results suggest that physical reductions of the phenol concentrations in some areas of the plume will be required before biodegradation of phenol can proceed at a reasonable rate. © 2013 Wiley Periodicals, Inc.     

Differences in Perceptions of Communication,Tourism Benefits,and Management Issues in a Protected Area of Rural Kenya

With record-breaking tourist visits in Kenya in 2005–2006, communities near the country’s renowned protected areas must undertake or revisit planning efforts to conserve and enhance the region’s natural, social, and economic resources. This article examines the differences between two stakeholder groups in the Samburu region of central Kenya: (1) protected area leadership and staff; and (2) members of the communities adjacent to the protected areas. Based on the results and analysis of 30 in-depth interviews, the authors identify differences between protected area staff and their community members regarding perceptions about communication between the two groups, and the economic benefits of tourism. The different stakeholders agreed, however, about challenges related to equitable distribution of tourism-based employment and revenue. The results indicate a need to reach consensus about what constitutes sufficient communication between national reserves and their community, and to what extent tourism-related revenue and employment should be distributed within the region. A discussion of the potential role of indicators and standards to make such decisions is presented.     

Reactive transport modeling of remedial scenarios to predict cadmium,copper, and zinc in north fork of Clear Creek,Colorado

The North Fork of Clear Creek (NFCC), Colorado, is an acid‐mine‐drainage‐impacted stream typical of many mountain surface waters affected by historic metal mining in the western United States. The stream is devoid of fish primarily because of high metal concentrations in the water (e.g., copper and zinc) and has large amounts of settled iron oxyhydroxide solids that coat the streambed. The NFCC is part of the Central City/Clear Creek Superfund site, and remediation plans are being implemented that include treatment of three of the main point‐source inputs and cleanup of some tailings and waste rock piles. This article examines dissolved (0.45‐μm filterable) concentrations of cadmium, copper, and zinc following several potential remediation scenarios, simulated using a reactive transport model (WASP4/META4). Results from modeling indicate that for cadmium, remediation of the primary point‐source adit discharges should be sufficient to achieve acute and chronic water‐quality standards under both high‐ and low‐flow conditions. To achieve standards for copper and zinc, however, the modeling scenarios suggest that it may be necessary to treat or remove contaminated streambed sediments in downstream reaches, as well as identify and treat nonpoint sources of metals. Recommendations for improvements to the model for metal transport in acid‐mine drainage impacted streams are made. These recommendations are being implemented by the U.S. Environmental Protection Agency. © 2009 Wiley Periodicals, Inc.     

Behavioural responses of indigenous benthic invertebrates (Echinogammarus meridionalis, Hydropsyche pellucidula and Choroterpes picteti) to a pulse of Acid Mine Drainage: a laboratorial study

The drainage of abandoned mines leads to several ecological problems, particularly the acidification of surface freshwater systems and heavy metal contamination. In order to study the possibility of using the behavioural early warning responses of Portuguese indigenous benthic invertebrates to detect an acute short-term pulse of Acid Mine Drainage (AMD), experiments with the Multispecies Freshwater Biomonitor MFB™ were performed and locomotion and ventilation were measured as endpoints. AMD was collected from the “São Domingos” mine (Southeast Portugal) and the following species were selected: Echinogammarus meridionalis (Pinkster, 1973), Hydropsyche pellucidula (Curtis, 1834) and Choroterpes picteti (Eaton, 1870). For simulating the pulsed exposure, AMD was added to river water where invertebrates were collected and pH was lowered until reaching 3.5. The effects of H⁺ and heavy metals were discriminated using HCl positive controls. In addition to behaviour, mortality was registered. E. meridionalis was the most sensitive species in terms of mortality and behavioural endpoints, followed by C. picteti and H. pellucidula. E. meridionalis early warning responses consisted of increased locomotion with subsequent increase in ventilation, whereas for C. picteti only an increase in locomotion was observed. H. pellucidula showed no early warning responses. This work demonstrates the suitableness of using benthic invertebrates' behavioural early warning responses for detecting spikes of pollutants like AMD.     

Multi-residue determination of pharmaceuticals in sludge and sludge enriched soils using pressurized liquid extraction, solid phase extraction and liquid chromatography with tandem mass spectrometry

An analytical method to determine a selection of 27 frequently prescribed and consumed pharmaceuticals in biosolid enriched soils and digested sludges is presented. Using a combination of pressurized liquid extraction, solid phase extraction and liquid chromatography with tandem mass spectrometry, it was possible to detect all analytes in each sample type at the low-sub ng g(-1) level. Solid phase extraction efficiencies were compared for 6 different sorbent types and it was found that Waters Oasis HLB cartridges offered enhanced selectivities with 20 analytes showing final method recoveries > or =60% in both soils and digested sludges. The method was validated for linearity, range, precision and limits of detection in both sample matrices. All analytes were then determined in sludge enriched soils as well as the precursor thermally dried sludge fertilizer produced from a primary wastewater treatment plant. Levels of the antibacterial agent triclosan were found to exceed 20 microg g(-1) in digested sludge and 5 microg g(-1) in thermally dried sludge cake. Significant traces of carbamazepine and warfarin were also detected in the above samples.