Incorporating evolutionary processes into population viability models

We examined how ecological and evolutionary (eco‐evo) processes in population dynamics could be better integrated into population viability analysis (PVA). Complementary advances in computation and population genomics can be combined into an eco‐evo PVA to offer powerful new approaches to understand the influence of evolutionary processes on population persistence. We developed the mechanistic basis of an eco‐evo PVA using individual‐based models with individual‐level genotype tracking and dynamic genotype–phenotype mapping to model emergent population‐level effects, such as local adaptation and genetic rescue. We then outline how genomics can allow or improve parameter estimation for PVA models by providing genotypic information at large numbers of loci for neutral and functional genome regions. As climate change and other threatening processes increase in rate and scale, eco‐evo PVAs will become essential research tools to evaluate the effects of adaptive potential, evolutionary rescue, and locally adapted traits on persistence.     

The role of agri‐environment schemes in conservation and environmental management

Over half of the European landscape is under agricultural management and has been for millennia. Many species and ecosystems of conservation concern in Europe depend on agricultural management and are showing ongoing declines. Agri‐environment schemes (AES) are designed partly to address this. They are a major source of nature conservation funding within the European Union (EU) and the highest conservation expenditure in Europe. We reviewed the structure of current AES across Europe. Since a 2003 review questioned the overall effectiveness of AES for biodiversity, there has been a plethora of case studies and meta‐analyses examining their effectiveness. Most syntheses demonstrate general increases in farmland biodiversity in response to AES, with the size of the effect depending on the structure and management of the surrounding landscape. This is important in the light of successive EU enlargement and ongoing reforms of AES. We examined the change in effect size over time by merging the data sets of 3 recent meta‐analyses and found that schemes implemented after revision of the EU's agri‐environmental programs in 2007 were not more effective than schemes implemented before revision. Furthermore, schemes aimed at areas out of production (such as field margins and hedgerows) are more effective at enhancing species richness than those aimed at productive areas (such as arable crops or grasslands). Outstanding research questions include whether AES enhance ecosystem services, whether they are more effective in agriculturally marginal areas than in intensively farmed areas, whether they are more or less cost‐effective for farmland biodiversity than protected areas, and how much their effectiveness is influenced by farmer training and advice? The general lesson from the European experience is that AES can be effective for conserving wildlife on farmland, but they are expensive and need to be carefully designed and targeted.     

Dynamics of the Mite Communities (Acari: Parasitiformes) in Nests of the Parus major

The dynamics of nest-dwelling mites from the nests of the great tit in the protected area of Kamchia Mountain in Northeastern Bulgaria was investigated. The mite fauna inhabiting the nests of great tit differs significantly in terms of the degree of infestation, species richness, abundance and structure of communities in study years. There are statistically significant differences in the specimens’ number between 2014 and the other years 2012, 2013 and 2015. The mite species such as Dermanyssus gallinae, Androlaelaps casalis and Ornithonyssus sylviarum demonstrated significant changes in the abundance over the study years. A relation between the abundance of a species and the species diversity in the nests was not registered. Comparison of the annual dynamics of mites in the nests of great tit and the nests of semi-collared flycatcher for the same period of time and for the same environment, showed similarities—a significant fluctuation in the abundance of mites over the years and differences—in the species richness. Regarding the structure of the communities, both similarities and differences were recorded.

     

Research priorities for conservation and natural resource management in Oceania's small‐island developing states

For conservation science to effectively inform management, research must focus on creating the scientific knowledge required to solve conservation problems. We identified research questions that, if answered, would increase the effectiveness of conservation and natural resource management practice and policy in Oceania's small‐island developing states. We asked conservation professionals from academia, governmental, and nongovernmental organizations across the region to propose such questions and then identify which were of high priority in an online survey. We compared the high‐priority questions with research questions identified globally and for other regions. Of 270 questions proposed by respondents, 38 were considered high priority, including: What are the highest priority areas for conservation in the face of increasing resource demand and climate change? How should marine protected areas be networked to account for connectivity and climate change? What are the most effective fisheries management policies that contribute to sustainable coral reef fisheries? High‐priority questions related to the particular challenges of undertaking conservation on small‐island developing states and the need for a research agenda that is responsive to the sociocultural context of Oceania. Research priorities for Oceania relative to elsewhere were broadly similar but differed in specific issues relevant to particular conservation contexts. These differences emphasize the importance of involving local practitioners in the identification of research priorities. Priorities were reasonably well aligned among sectoral groups. Only a few questions were widely considered answered, which may indicate a smaller‐than‐expected knowledge‐action gap. We believe these questions can be used to strengthen research collaborations between scientists and practitioners working to further conservation and natural resource management in this region.     

Genetic structure and allozyme variation of sea bass (Dicentrarchus labrax and D. punctatus) in the Mediterranean Sea

This paper reports data on 28 allozyme loci in wild and artificially reared sea bass (Dicentrarchus labrax) samples, originating from either coastal lagoon or marine sites in the Mediterranean Sea. F _ST analysis (θ estimator) indicated strong genetic structuring among populations; around 34% of the overall genetic variation is due to interpopulation variation. Pairwise θ estimates showed that, on average, the degree of genetic structuring was much higher between marine populations than between samples from lagoons. Six polymorphic loci showed differences in allele frequencies between marine and lagoon samples. Multivariate analyses of individual allozymic profiles and of allele frequencies suggested that different arrays of genotypes prevail in lagoons compared to marine samples, particularly at those loci that, on the basis of previous acclimation experiments, had been implicated in adaptation to freshwater. On the other hand, variation at “neutral” allozyme loci reflects to a greater extent the geographic location of populations. Allozyme differentiation was also studied in a D. labrax population from the Portuguese coast. Average genetic distance between this population and the Mediterranean populations was quite high (Nei's D = 0.236) and calls into question the taxonomic status of the Portuguese population. Finally, genetic relationships between D. labrax and D. punctatus were evaluated. Average Nei's D was 0.648, revealing high genetic differentiation between the two species, even for two sympatric populations of these species in Egypt; thus gene flow was not indicated between species. Received: 24 October 1996 / Accepted: 27 November 1996     

Extrinsic and intrinsic determinants of winter foraging and breeding phenology in a temperate seabird

In temperate regions, winter presents animals with a number of challenges including depressed food abundance, increased daily energy requirements, higher frequency of extreme weather events and shortened day length. Overcoming these constraints is critical for overwintering survival and scheduling of future breeding of long-lived species and is likely to be state dependent, associated with intrinsic abilities such as food acquisition rates. We examined the relationship between environmental and intrinsic factors on overwintering foraging and subsequent breeding phenology of the European shag Phalacrocorax aristotelis, a diurnal marine predator. We tested a range of hypotheses relating to overwintering foraging time and location. We found that individuals greatly increased their foraging time in winter to a peak of more than 90% of available daylight at the winter solstice. The seasonal patterns of foraging time appear to be driven by a combination of light levels and weather conditions and may be linked to the availability of the shag's principal prey, the lesser sandeel Ammodytes marinus. There was no evidence that shags dispersed south in winter to increase potential foraging time. Foraging time decreased after the winter solstice and, crucially, was correlated with subsequent breeding phenology, such that individuals that spent less time foraging in February bred earlier. The relationship was much stronger in females than males, in line with their more direct control of timing of breeding. Our results demonstrate that pre-breeding intrinsic foraging ability is critical in determining breeding phenology.     

Landfill leachate treatment methods: A review

Landfilling of municipal waste is still a major issue of the waste management system in Europe. The generated leachate must be appropriately treated before being discharged into the environment. Technologies meant for leachate treatment can be classified as follows (i) biological methods, (ii) chemical and physical methods. Here we review briefly the main processes currently used for the landfill leachates treatments.     

Spatial variation of growth and gonadal developments of Maurolicus muelleri in the Norwegian Sea and in a Norwegian fjord

The epibenthic megafauna of the high-Arctic Northeast Greenland shelf was investigated by means of seafloor photography and Agassiz trawl catches. At 54 stations in water depths between 40 and 770 m, sequences of color slides, each depicting about 1 m² of the seafloor, were obtained along photographic transects of about 100 to 600 m length. The photographs were quantitatively analyzed for abundance of epibenthic organisms identified by comparison with specimens collected from trawl catches. Megabenthic biomass was estimated by multiplying density values with averge body mass figures. For five dominant brittle star species, the population oxygen uptake and, thus, organic carbon mineralization potential were approximated by applying individual respiration rates of average-sized specimens to density figures. Multivariate analyses of the megabenthic species distribution revealed a distinct depth zonation. Shallow shelf banks (<150 m), characterized by coarse sediments, many stones and boulders as well as negative bottom water temperatures, housed a rich epifauna (30 to 340 ind m^–2, 1.8 to 10.5 g AFDW m^–2), strongly dominated (80 to 98% by numbers) by the brittle stars Ophiocten sericeum and Ophiura robusta. The oxygen uptake by brittle stars ranged from 0.4 to 95 mol O₂ m^–2 h^–1 (i.e., assuming a respiratory quotient of 0.8, an organic carbon mineralization of 0.1 to 21.9 mg C m^–2 d^–1). At the bank flanks sloping to the shelf troughs (100 to 580 m), finer sediments prevailed, stones were rare, and bottom water temperatures were positive due to the inflow of Atlantic water. Compared to bank sites, total epibenthic abundances as well as carbon mineralization by brittle stars were roughly ten times and total biomass about four times smaller. In deep shelf depressions as well as at the continental slope (200 to 770 m), stones were completely lacking, and sediments very fine. Epibenthic standing stock and carbon mineralization were one to two orders of magnitude lower than on the banks. The estimation of brittle star oxygen uptake indicates that a considerable portion of the organic carbon produced in the polynya and partitioned to the benthos may be remineralized by epibenthic bank assemblages.     

Host glutamine synthetase activities in the giant clam—zooxanthellae symbiosis: effects of clam size,elevated ammonia and continuous darkness

Host tissues and zooxanthellae of the giant clam Tridacna gigas contained glutamine synthetase, with the highest transferase activities present in the gill, followed by the kidney, mantle, zooxanthellae, foot, heart and adductor muscle, in that order. Synthetase activities of glutamine synthetase in host tissues and zooxanthellae were in a similar order, but the differences were not so marked. Host tissues also contained hexokinase, glucose-6-phosphate dehydrogenase and malate dehydrogenase. Highest hexokinase activities were present in the heart, followed, in order, by the gill, mantle, adductor muscle and foot. Highest glucose-6-phosphate dehydrogenase activities were present in the gill, followed by the mantle, heart, adductor muscle and foot. All tissues assayed contained high malate dehydrogenase activities. There was no detectable glutamate dehydrogenase activity. Glutamine synthetase activity in gill and mantle tissue decreased by 1.6% with every 1 cm increase in clam size. Host glutamine synthetase activity decreased by 80% in gill tissue and by 45% in mantle tissue in clams which were maintained for 8 d in continuous darkness. Similar effects were found when clams were kept in light in the presence of elevated ammonia concentrations. It is suggested that both host and symbionts are nitrogen-deficient in small clams and that host glutamine synthetase plays a role in ammonia assimilation by the intact association.     

Le système assimilation-régénération des sels nutritifs dans les eaux superficielles de l'océan Austral

Low primary-productivity levels in high-nutrient environments of the Southern Ocean are not yet well understood. An accurate knowledge of nutrient assimilation by phytoplankton, at the base of the pelagic food-web, therefore appears to be essential. A study of the mesoscale hydrological structure and chemical observations in the upper layers of the Indian sector of the Antarctic Ocean (Cruise MD-25 FIBEX of M.S. Marion Dufresne, January–February 1981) permitted us to develop a method for estimating nutrient consumption by phytoplankton. After strong vertical mixing in winter, the homogeneous Antarctic Surface Water (ASW) is, in summer, divided into two parts by a well-formed pycnocline. In the upper layer, corresponding approximately to the photic zone, we observed nutrient depletion resulting from photosynthetic activity, while the underlaying thermal minimum layer displayed unaltered winter characteristics, including nutrient concentrations typical of winter surface-water conditions. Taking into account the nutrient depletion in summer, we calculated the assimilation ratios for Antarctic phytoplankton as follows: ([NO ₃ ^- lower]-[NO ₃ ^- upper]):([PO ₄ upper])=N:P=11.2±2.4 and N:Si=0.27±0.05. These ratios are lower than the classical Redfield ratios (N:P=16 and N:Si=1), but are in good agreement with the elementary composition of phytoplankton samples collected during the same cruise. Moreover, they agree with previously published data on stoechiometric determinations of particulate matter in surface-water samples. Besides, in the transition layer between the lower layer and Warm Deep Water (WDW), the calculated mineralization ratios were slightly higher than the assimilation ratios: N:P=14.6 and N:Si=0.37. From these ratios, it would appear that, in these surface layers of the Southern Ocean (down to 250 m), assimilation-regeneration mechanisms operate in such a way that phosphate and silicate contents decrease much more than nitrate content during the northward drift of the surface waters. The determination of assimilation ratios taking into account the nutrient depletion of the upper layer allowed us to evaluate the carbon net-production which integrates time-space variations in the photic layer over the whole early summer period. We estimated a production rate (0.4 g C m^-2 d^-1) of the same order of magnitude as the mean value obtained by the ¹⁴C method (0.2 g C m^-2 d^-1). The theoretic silicium consumption by phytoplankton along a meridian transect, calculated using an estimated assimilation ratio of C:Si=1,85, indicates that the marked south-north decrease in silicate concentration in the Antarctic Surface Water would mainly result from biological activity. The silicate concentrations thus calculated were in good agreement with concentrations measured along a previous transect across the Southern Ocean.

---

Le système assimilation-régénération des sels nutritifs dans les eaux superficielles de l'océan Austral