Enumeration of methanogens with a focus on fluorescence in situ hybridization

Methanogens, the members of domain Archaea are potent contributors in global warming. Being confined to the strict anaerobic environment, their direct cultivation as pure culture is quite difficult. Therefore, a range of culture-independent methods have been developed to investigate their numbers, substrate uptake patterns, and identification in complex microbial communities. Unlike other approaches, fluorescence in situ hybridization (FISH) is not only used for faster quantification and accurate identification but also to reveal the physiological properties and spatiotemporal dynamics of methanogens in their natural environment. Aside from the methodological aspects and application of FISH, this review also focuses on culture-dependent and -independent techniques employed in enumerating methanogens along with associated problems. In addition, the combination of FISH with micro-autoradiography that could also be an important tool in investigating the activities of methanogens is also discussed.     

Heavy metal pollution in Suva harbour sediments,Fiji

In Fiji, contamination of the coastal environment by heavy metals is proving to be a real concern. This work reports for the first time analyses carried out on an extensive basis, to ascertain the extent of anthropogenic contamination by heavy metals in the <0.063 mm surface sediments of Suva harbour. Sediment samples from 40 sites selected within the harbour were collected and analysed for five heavy metals. The levels of the metals range from 21.4 to 143.0 ± 0.1 mg/kg Cu, 1.40 to 4.87 ± 0.07 wt.% Fe, 22.1 to 93.5 ± 0.3 mg/kg Pb, 40.2 to 269.0 ± 0.3 mg/kg Zn and 1.1 to 2.6 ± 0.2 mg/kg Sn. With reference to the pristine area of the Great Astrolabe, in Kadavu, the acquired data from the harbour are indicative of heavy metal pollution. This could be attributed to the numerous industrial and commercial activities at Wailada and Walu Bay industrial areas, the municipal dump located at the Suva foreshore and the Suva wharf. The pollution is further compounded by the high population density in Suva city.     

Evaluation of adsorption potential of adsorbents: a case of uptake of cationic dyes

Adsorption potential of a commercial activated carbon (FS300) has been evaluated for the uptake of cationic dyes namely methylene blue (MB) and rhodamine B (RB). Though, there are numerous studies in literature which report the sorption of MB (more than 40 studies) and RB (more than 10), however none of these use a common parameter to report the capacity of the sorbent. A protocol, based on the equilibrium dye concentration has been proposed to measure the sorption potential of a sorbent. The Langmuir model can very well describe the experimental equilibrium data for both dyes (coefficient of correlation > 0.999). MB (Qm = 312.5 mg g(-1)) is more adsorbable than the RB (Qm = 144.9 mg g(-1)). Molecular weight and chemical structure of dye molecules seem to affect the dye uptake. The effect of pH on dye uptake has also been evaluated by varyingpH from 3 to 11. Uptake of MB increases with pH, wherein RB removal decreases with pH. Dyes could not be desorbed either by distilled water (0.06 and 0.11% for MB and RB respectively), or by 0.1 NHCl (0.136 and 3.0% for MB and RB respectively) indicating, chemical adsorption type of adsorbent-adsorbate interactions.     

Impact of copper on haematological profile of freshwater fish, Channa punctatus

The present study was to evaluate heavy metal toxicity stress symptoms in fish blood during long-term exposure of sublethal concentration of copper sulphate (CuSO4). The effects of copper on various heamatological parameters were evaluated exposing Indian fresh water fish, Channa punctatus to a sub-lethal concentration of copper sulphate (0.36 mg l(-1)) for different periods. Exposure of fish to copper showed a significant decrease in the haemoglobin (Hb) content from 10.73 to 6.60%, red blood cells (RBC) from 2.86 to 1.84 x 10(6)/mm3 and packed cell volume (PCV) from 31.00 to 23.33% at the end of 45th day as compared to control. Whereas the white blood cells (WBC) increased from 60.00 to 92.48 x10(3)/mm3, clotting time (CT) from 27.66 to 43.00 second, erythrocyte sedimentation rate from 5.0 to 13.66 mm/hr and mean corpuscular volume from 108.11 to 126.85 cmu, significantly, with increase in exposure periods. Although mean corpuscular haemoglobin concentration (MCHC) and mean corpuscular haemoglobin (MCH) values showed significant increase during 15 and 30 days exposures, both the values were found significantly increased at the end of the experimental period. The differential leucocytes count (DLC) showed a significant increase in the populations of lymphocytes and eosinophils, whereas neutrophils, monocytes and basophiles were found decreased after exposure to copper.     

Modeling inverted biomass pyramids and refuges in ecosystems

Although the existence of robust inverted biomass pyramids (IBPs) seems paradoxical, they are well known to exist in planktonic communities, and have recently been discovered in pristine coral reefs and in a reef off the North Carolina coast. Understanding the underlying mechanisms which produce inverted biomass pyramids provides new ecological insights. Some ecologists hypothesize that “the high growth rate of prey and low death rate of predators” causes IBPs. However, we show this is not always the case (see Sections 3.1 and 4). We devise predator–prey models to describe three mechanisms that can lead to IBPs: (1) well-mixed populations with large prey turn-over rate, (2) well-mixed populations with prey immigration, and (3) non-mixed populations where the prey can hide in refuges. The three models are motivated by the three ecosystems where IBPs have been observed. We also devise three refuge mediated models, with explicit refuge size, which incorporate different prey responses in the refuge, and we discuss how these lead to IBPs.     

Combinatorial effects of distillery and sugar factory effluents in crop plants

Under the reutilization and recycling strategy of industrial effluents, treated distillery and sugar factory mixed effluent was used in petridish culture experiments to investigate its effect on seed germination and seedling growth in wheat, garden pea, black gram and mustard. The seed germination and seedling growth were significantly reduced with increase in concentration of the effluent. The fresh matter was found significantly increased in barley (1.16 g per seedling in 25% dilution level of effluents in comparison to 0.93 in control), while other higher dilution levels reduce it. Wheat, garden pea, black gram, mustard invariably showed inhibition in fresh weight. Dry weight was found consistently reduced or unchanged in different treatments. Total chlorophyll contents in barley were significantly increased in different treatments (2.351 and 2.721 mg/g fresh weight of tissue at 25, 50% dilution levels in comparison to 1.781 of control) while in other crop it was reduced alloverthe treatments. Amylase activity in wheat, garden pea, black gram and mustard was reduced in all the treatments. Only in barley its level was enhanced from 0.76 to 0.85, 0.96, 0.81 in 25, 50, 75% dilution levels of the effluent mixture respectively Based on the data of different crops barley was found to be highly tolerant as the 25 and 50% dilution levels of combined effluents. It showed no change in germination %, while seedling growth was increased in lower dilution levels of combined effluent as compared to control Barley>garden pea>wheat>black gram>mustard gradually showed increased level of sensitivity respectively Most detrimental effects were seen in mustard. This toxicity might be due to excess of nutrients, beyond the limits of tolerance. Therefore, the higher concentration of mixed effluent was not advisable for irrigation purpose, however it could be used for irrigation purpose after proper treatment and dilution (one part treated effluent and five parts of available irrigation water), as this dilution level was found growth and yield promotory     

Vitamins E and C reduce oxidative stress and mitochondrial permeability transition caused by camptothecin – an in vitro study

Camptothecin (CPT), a broad spectrum antineoplastic agent, is known to induce oxidative stress and mitochondria are among the main sources of intracellular reactive oxygen species (ROS). We investigated the merit of vitamins E and C supplementation on CPT-induced mitochondrial alterations in vitro. Following treatment of isolated liver mitochondria with CPT, we assessed the mitochondrial membrane permeability transition (MPT), concentration of malondialdehyde, antioxidants and activities of the enzymes of the respiratory chain and Krebs cycle. Our results provide evidence that CPT caused mitochondrial swelling, increased lipid peroxidation and transition of mitochondrial permeability. The CPT lowered the levels of reduced mitochondrial thiols suggesting that thiol oxidation is the mechanism underlying CPT-induced MPT. Identical experiments were also performed after preincubating the mitochondria with vitamins E and C. It was found that vitamins E and C pretreatment inhibited the deleterious effects of CPT and loss of enzyme activity was restored by antioxidant supplementation. Our results suggest that the toxicity of CPT was mediated by an increase in ROS production by mitochondria. However, the addition of vitamins E or C ameliorated the oxidative stress. We propose that an attempt to counteract the deleterious consequences of chemotherapy with nutritional therapies may be a rational approach in superior patient care especially in a disease like cancer.     

In vivo effects of acute administration of potassium tetranitrodiammine cobaltate(III) on rat erythrocytes

Potassium tetranitrodiammine cobaltate(III) K[Co(NH₃)₂(NO₂)₄] is a coordination complex having Co(III) as the central atom. Cobalt(III) compounds are being advocated for their anticarcinogenic potential. In the present study, we have for the first time evaluated this compound for its toxicity to rat RBC. The parameters studied include the effects of potassium tetranitrodiammine cobaltate(III) on GSH, GST, catalase, G6PD, acid phosphatase, GOT, and GPT. Scanning electron microscopy of RBCs of potassium tetranitrodiammine cobaltate(III) treated rats has also been carried out for evaluating its influence on the red cell morphology. The data showed that potassium tetranitrodiammine cobaltate(III) treatment causes marked biochemical changes in the rat RBCs along with changes in their shapes characterized by the formation of acanthocytes. The results thus suggest that acute administration of potassium tetranitrodiammine cobaltate(III) is potentially toxic to rat RBCs.     

Yar tsa Gumba (Cordyceps sinensis): A call for its sustainable exploitation

Yar tsa Gumba, the local name for Cordyceps sinensis, is an entomophilus fungus in the order Hypocreales and family Scolecosporaceae, found primarily in alpine and subalpine regions, from 3200 to 4000 m asl. The fungus is parasitic on caterpillars, primarily those in the genus Hepialus. Studies on Cordyceps sinensis indicate that the fungus may improve liver function, reduce cholesterol, adjust protein metabolism, inhibit lung carcinoma and treat aging disorders. In the last five years, since it was found in parts of Garhwal and Kumaun Himalaya, massive exploitation has occurred, leading to a drastic decrease in wild populations. This paper presents results of an exploration carried out on the fungus at several important sites, the mode of trafficking and suggested policy initiative for its sustainable exploitation.     

Agro-biodiversity in rice–wheat-based agroecosystems of eastern Uttar Pradesh,India: implications for conservation and sustainable management

In this study, we analysed the indigenous practices of agro-biodiversity, changing patterns of cropping systems and conservation of agriculturally important natural resources of rice–wheat-based agroecosystems. The research was carried out in three villages of Azamgarh district, eastern Uttar Pradesh, India. Participatory approaches and personal interviews were combined to collect the data from 180 farmers. The results indicated that resource-poor (RP) farmers, by applying traditional practices of natural resource conservation, outperform their rich (RR) counterparts in conserving agro-biodiversity. Increase in irrigation facilities, adoption of improved crop varieties, commercialisation of farming and socio-economic changes have threatened the agro-biodiversity and related natural resources of these agroecosystems. For most of the crops, the RP farmers had better production stability as compared to the RR ones because the former tend to apply more sustainable and ecologically sound indigenous practices. A negative growth rate was observed in the area/numbers and production of legumes, livestock, pasture lands and community forestry. Women, who are the local custodians of conserving indigenous biodiversity (uncultivated species) and crop varieties through localised knowledge and sociocultural institutions, had significantly higher knowledge on agro-biodiversity than men. We concluded that integration of farmers’ eco-friendly practices with formal science and policy-making in a participatory mode may enhance sustainability of functions of agroecosystem leading to the strengthening of adaptive practices in changing climate and socio-economic scenario.