Assessment of Disinfectant Performance in Chicken Cages Using Coliphages

To control the spread of avian flu (influenza) and other viruses of concern among commercial flocks, it is essential that proper disinfection procedures be developed along with methods for assessing their performance. Such methods must be rapid and inexpensive. Coliphages were used as indicators to demonstrate the efficacy of quaternary ammonium compounds and chlorine bleach for the inactivation of viruses in chicken cages. The concentration of indigenous coliphages in chicken litter was found to be 10⁴–10⁷ per gram and from 0 to 8,500 per 100 cm² of floor surface. To assess the effectiveness of the disinfectants, floor samples were collected pre and post disinfection. These results indicated that chlorine bleach was more effective than quaternary ammonium compounds in reducing the amount of indigenous coliphages. To obtain better quantitative data, MS-2 coliphage was sprayed onto cage floors, left overnight to dry, and then the surfaces disinfected. Similar results were obtained with both indigenous coliphages and MS-2. There appears to be no significant difference in coliphage reduction by increasing the contact time from 10 to 30 min. To ensure at least a 99.9% reduction of virus at least 236 ml of household bleach per 3.78 l should be used.     

Genetic Analysis of Norovirus Strains that Caused Gastroenteritis Outbreaks Among River Rafters in the Grand Canyon,Arizona

Toilet solid waste samples collected from five outbreaks among rafters in the Grand Canyon were subjected to sequencing analysis of norovirus partial capsid gene. The results revealed that a GI.3 strain was associated with one outbreak, whereas the other outbreaks were caused by GII.5 whose sequences shared >98.9% homology.     

Heavy metal removal from industrial effluents by sorption on cross-linked starch: chemical study and impact on water toxicity

Batch sorption experiments using a starch-based sorbent were carried out for the removal of heavy metals present in industrial water discharges. The influence of contact time, mass of sorbent and pollutant load was investigated. Pollutant removal was dependent on the mass of sorbent and contact time, but independent of the contaminant load. The process was uniform, rapid and efficient. Sorption reached equilibrium in 60 min irrespective of the metal considered (e.g. Zn, Pb, Cu, Ni, Fe and Cd), reducing concentrations below those permitted by law. The material also removed residual turbidity and led to a significant decrease in the residual chemical oxygen demand (COD) present in the industrial water discharge. The germination success of lettuce (Lactuca sativa) was used as a laboratory indicator of phytotoxicity. The results show that the sorption using a starch-based sorbent as non-conventional material, is a viable alternative for treating industrial wastewaters.     

Soil and Water Characteristics in Restored Canebrake and Forest Riparian Zones1

Andrews, Danielle M., Christopher D. Barton, Randall K. Kolka, Charles C. Rhoades, and Adam J. Dattilo, 2011. Soil and Water Characteristics in Restored Canebrake and Forest Riparian Zones. Journal of the American Water Resources Association (JAWRA) 47(4):772‐784. DOI: 10.1111/j.1752‐1688.2011.00555.x Abstract: The degradation of streams has been widespread in the United States. In Kentucky, for instance, almost all of its large streams have been impounded or channelized. A restoration project was initiated in a channelized section of Wilson Creek (Nelson Co., Kentucky) to return its predisturbance meandering configuration. A goal of the project was to restore the native riparian corridor with giant cane and bottomland forest species. The objective of this study was to evaluate the use of giant cane in riparian restoration and to compare water quality and soil attributes between restored cane and forested communities. Comparison of data to replicated sites of similar size in undisturbed upstream areas (control) was also examined to evaluate restoration success. Vegetation establishment was initially hindered by frequent flooding in 2004, but mean survival was good after two growing seasons with rates of 80 and 61% for forest and cane plots, respectively. Results showed an improvement in stream water quality due to restoration activities. Significant differences between the cane and forested plots in shallow groundwater dissolved oxygen, NO₃^?‐N, NH₄⁺‐N, and Mn concentrations suggest that soil redox conditions were not similar between the two vegetation types. Retention and transformation of carbon (C) and nitrogen (N) within the restored riparian system also differed by vegetation treatment; however, both communities appeared to be advancing toward conditions exhibited in the control section of Wilson Creek.     

Extensive cross-disciplinary analysis of biological and chemical control of Calanus finmarchicus reproduction during an aldehyde forming diatom bloom in mesocosms

Egg and faecal pellet production and egg hatching success of the calanoid copepod Calanus finmarchicus were monitored over a period of 14?days (14?C28 April, 2008) while fed water from 4 differently treated mesocosms and ambient water. Two of the mesocosms used were inoculated with the polyunsaturated aldehyde (PUA)-producing diatom Skeletonema marinoi, while 2 received only nutrient additions with or without silica. The mesocosms developed blooms of S. marinoi, mixed diatoms or the haptophyte Phaeocystis pouchetii, respectively. Faecal pellet production of C. finmarchicus increased with increasing food availability. Egg production increased with time in all mesocosms to a maximum single female production of 232 eggs female^?1?day^?1 (average of 90 eggs female^?1?day^?1) and followed the development of ciliates and P. pouchetii, but was not affected by the observed high (up to 15?nmol?L^?1) PUA production potential of the phytoplankton. The hatching success of the eggs produced on the mesocosm diets was high (78?C96%) and was not affected by either aldehydes in the maternal diet or exposure to the dissolved aldehydes in the water.     

Predicting breeding habitat for amphibians: a spatiotemporal analysis across Yellowstone National Park

The ability to predict amphibian breeding across landscapes is important for informing land management decisions and helping biologists better understand and remediate factors contributing to declines in amphibian populations. We built geospatial models of likely breeding habitats for each of four amphibian species that breed in Yellowstone National Park (YNP). We used field data collected in 2000-2002 from 497 sites among 16 basins and predictor variables from geospatial models produced from remotely sensed data (e.g., digital elevation model, complex topographic index, landform data, wetland probability, and vegetative cover). Except for 31 sites in one basin that were surveyed in both 2000 and 2002, all sites were surveyed once. We used polytomous regression to build statistical models for each species of amphibian from (1) field survey site data only, (2) field data combined with data from geospatial models, and (3) data from geospatial models only. Based on measures of receiver operating characteristic (ROC) scores, models of the second type best explained likely breeding habitat because they contained the most information (ROC values ranged from 0.70 to 0.88). However, models of the third type could be applied to the entire YNP landscape and produced maps that could be verified with reserve field data. Accuracy rates for models built for single years were highly variable, ranging from 0.30 to 0.78. Accuracy rates for models built with data combined from multiple years were higher and less variable, ranging from 0.60 to 0.80. Combining results from the geospatial multiyear models yielded maps of "core" breeding areas (areas with high probability values for all three years) surrounded by areas that scored high for only one or two years, providing an estimate of variability among years. Such information can highlight landscape options for amphibian conservation. For example, our models identify alternative areas that could be protected for each species, including 6828-10 764 ha for tiger salamanders, 971-3017 ha for western toads, 4732-16 696 ha for boreal chorus frogs, and 4940-19 690 ha for Columbia spotted frogs.     

Transport of Cryptosporidium parvum oocysts in sandy soil: impact of length scale

The objective of this study was to investigate the impact of length scale (travel distance) on the retention and transport of Cryptosporidium oocysts in a sandy soil. Long columns (1 and 2 meters) and an in situ lysimeter (4 m) were used to allow investigation of larger-scale transport under controlled conditions. Significant retention of oocysts was observed, with the magnitude of removal from solution ranging between 2 to 5 logs. While the removal was greater for longer travel distances (or residence times), the increase was not log-linear. This observation indicates that oocyst transport was not consistent with standard colloid filtration theory. The observed behavior is speculated to arise, at least in part, from intrapopulation variability in oocyst properties. The results of this study indicate that while Cryptosporidium oocysts may be expected to experience significant retention and removal during transport in sandy soil, the magnitude of retention may be less than that which would be predicted by applying standard colloid filtration theory to the results of typical short-column experiments. Thus, a fraction of the oocysts may be more mobile than anticipated and thereby pose a greater than expected risk to groundwater.     

Novel operations research methods for efficiently determining irreplaceable sites for conservation

We examine the irreplaceability of sites in the context of the species set covering problem and the maximal covering species problem. We show that a succession of 0-1 programming problems can be solved to quickly determine the set of irreplaceable sites. For the widely available Oregon data set, we find a general lack of trend in the number of irreplaceable sites with the number of sites available for selection used. Moreover, we observe that irreplaceability at one level of resource may not be a predictor of irreplaceability at a higher or a lower level of resource. Finally, we investigate the economic value of irreplaceable sites by trial removals of those sites. This paper is dedicated to the memory of Dr. Charles S. ReVelle.