SWATmodel: A Multi‐Operating System,Multi‐Platform SWAT Model Package in R

The Soil and Water Assessment Tool (SWAT) model (Arnold et al., 1998) is a popular watershed management tool. Currently, the SWAT model, actively supported by the U.S. Department of Agriculture and Texas A&M, operates only on Microsoft^® Windows, which hinders modelers that use other operating systems (OS). This technical note introduces the Comprehensive R Archive Network (CRAN) distributed “SWATmodel” package which allows SWAT 2005 and 2012 to be widely distributed and run as a linear model‐like function on multiple OS and processor platforms. This allows researchers anywhere in the world using virtually any OS to run SWAT. In addition to simplifying the use of SWAT across computational platforms, the SWATmodel package allows SWAT modelers to utilize the analytical capabilities, statistical libraries, modeling tools, and programming flexibility inherent to R. The software allows watershed modelers to develop a simple hydrological watershed model conceptualization of the SWAT model and to obtain a first approximation of the minimum expected results a more complicated model should deliver. As a proof of concept, we test the SWAT model by initializing and calibrating 314 U.S. Geological Survey stream gages in the Chesapeake Bay watershed and present the results.     

Environmental factors influencing attenuation of methane and hydrochlorofluorocarbons in landfill cover soils

The influence of different environmental factors on methane oxidation and degradation of hydrochlorofluorocarbons (HCFCs) was investigated in microcosms containing soil sampled at Skellingsted Landfill, Denmark. The soil showed a high capacity for methane oxidation resulting in a maximum oxidation rate of 104 microg CH4 g(-1) h(-1) and a low affinity of methane with a half-saturation constant of 2.0% v/v. The hydrochlorofluorocarbons HCFC-21 (dichlorofluoromethane) and HCFC-22 (chlorodifluoromethane) were rapidly oxidized and the oxidation occurred in parallel with the oxidation of methane. The maximal HCFC oxidation rates were 0.95 and 0.68 microg g(-1) h(-1) for HCFC-21 and HCFC-22, respectively. Increasing concentrations of HCFCs resulted in decreased methane oxidation rates. However, compared with typical concentrations in landfill gas, relatively high HCFC concentrations were needed to obtain a significant inhibition of methane oxidation. In general, the environmental factors studied influenced the degradation of HCFCs in almost the same way as they influenced methane oxidation. Temperature had a strong influence on the methanotrophic activity giving high Q10 values of 3.4 to 4.1 over the temperature range of 2 to 25 degrees C. Temperature optimum was around 30 degrees C; however, oxidation occurred at temperatures as low as 2 degrees C. A moisture content of 25% w/w yielded the maximum oxidation rate as it allowed good gas transport together with sufficient microbial activity. The optimum pH was around neutrality (pH = 6.5-7.5) showing that the methanotrophs were optimally adapted to the in situ pH, which was 6.9. Copper showed no inhibitory effect when added in relatively high concentrations (up to 60 mg kg(-1)), most likely due to sorption of copper ions to soil particles. At higher copper concentrations the oxidation rates decreased. The oxidation rates for methane, HCFC-21, and HCFC-22 were unaltered in ammonium-amended soil up to 14 mg kg(-1). Higher ammonium concentrations inhibited the oxidation process. The most important parameters controlling oxidation in landfill cover soil were found to be temperature, soil moisture, and methane and oxygen supply.     

Hydrochemical stratification in flooded underground mines: an overlooked pitfall

The fact that flooded underground mines are commonly hydrochemically stratified is often not appreciated. Water samples taken from the water surface in partly flooded shafts are often wrongly assumed to represent the water quality existing throughout the entire water column. In some cases, treatment systems have been designed on the basis of these often misleading water surface samples. Stratification can build up within a slowly recovering system where there are few lateral inflows and outflows to the system. Less mineralised, shallow-sourced water enters at the top of the water column and more heavily mineralised water tends to remain at the base of the water column. This water has a high dissolved solids content due to dissolution of increasing amounts of pyrite oxidation salts and other minerals as the water level rises through the old workings. However, such stratification can easily be lost following hydraulic disturbance of the system (either by pumping or by natural decant when the water level reaches an outflow pathway from the mine system, such as an old adit or shaft collar) and often results in surface discharges of poor water quality. Test pumping of one such stratified system (Frances Colliery, Scotland) has provided useful information about how stratified systems develop, and how they can behave when disturbed. The water quality observed after stratification was disturbed by pumping was worse than would have been anticipated on the basis of water samples taken from the surface of the water column prior to pumping (with concentrations of contaminants such as iron and zinc being around two orders of magnitude greater than in water surface samples). Taken together with other information from the literature, the experience at Frances Colliery supports the proposal of criteria for recognising when stratification of mine water quality might be anticipated, thus facilitating the timely deployment of measures required for its detection at an early stage.     

CHALLENGES IN GROUND WATER REMEDIATION: DENSE NONAQUEOUS PHASE LIQUIDS1

ABSTRACT: Dense nonaqueous phase liquid (DNAPL) contaminated ground water has proven to be exceptionally difficult to remediate for both physical and chemical reasons. Since DNAPL's are denser than water, their movement is not governed by the direction of ground water flow as is generally the case for other ground water contaminants. Additionally, DNAPLs' interactions with aquifer solids through processes such as sorption tend to make the pollution linger or sometimes apparently disappear, only to return later. Unfortunately, pump-and-treat systems, the traditional way ground water contamination is addressed, have not been effective in cleaning DNAPL contaminated water. Other remediation technologies continue to be developed to address these problems. Policy changes will also be necessary to effectively address the difficulties associated with ground water remediation.     

Die Sinneszellen der Wirbeltiernetzhaut

Vertebrate visual cells represent a system in an extraordinarily dynamic state. Major parts of the photoreceptors are continually degraded and resynthesized, thus, the cell's morphological and functional integrity is maintained. Some components of visual cell renewal processes follow an endogenous, circadian rhythm driven by an ocular oscillator. Regulative mechanisms of these circadian rhythms may comprise interactions between the neurohormone melatonin and the putative retinal neurotransmitter and neuromodulator dopamine.     

Metal behaviour in an estuary polluted by acid mine drainage: the role of particulate matter

The concentrations of dissolved and suspended particulate Cd, Cu and Zn have been determined in water samples obtained during two axial transects of the Rio Tinto-Huelva Ria system in south-west Spain, which is severely impacted by acid mine drainage. Although the metal concentrations in both phases were elevated, dissolved metals were dominant and, in the upper estuary, constituted > 99% of total metal in the water column. Dissolved metals behaved non-conservatively on each transect, with maximum concentrations in the low salinity region. There was no evidence of metal adsorption within the turbidity maximum zone, despite the high specific surface areas of resuspending particles. Measurements of electrophoretic mobility showed that the suspended particulate matter (SPM) had a positive surface charge in the salinity range 0-4, where the waters had a pH < 3. Desorption experiments were carried out in which SPM from the turbidity maximum zone was resuspended in coastal seawater. The desorption of the metals was monitored for 24 h, using anodic stripping voltammetry (ASV) to detect the variation in total dissolved Cd, Cu and Zn and the species of Cu and Zn. Total dissolved Cd concentrations doubled during the incubation period, whereas the concentration of total dissolved Cu declined and that of Zn remained rather constant. The ASV-labile fraction of dissolved Cu and Zn showed an initial sharp release followed by a slower uptake. However, desorption was shown to be a minor source of dissolved metals and made little contribution to the non-conservative behaviour in the low salinity zone. The results are used to predict the effects of acid mine drainage on estuarine ecology.     

Integration of natural behavior in housing systems

This paper deals with how the natural behavior of animals kept for production can be integrated when planning new housing systems or making changes to existing housing systems. Natural behavior can be defined as the repertoire of different behaviors animals show when kept in environments where they can carry out behaviors created in the evolutionary process. Motivation and innate behaviors are important aspects of natural behavior, and hindering them may lead to abnormal behavior and stress. One should first get a basic knowledge about the species-specific behavior in the wild or a seminatural environment. Thereafter, key stimuli and key features for normal behavior should be worked out, where after a reduction in space, development of a pen, scientific testing, modification, and finally testing the function in a larger scale should be carried out. Examples of housing of calves during the milk period and housing of sows around farrowing are given.     

TNT particle size distributions from detonated 155-mm howitzer rounds

To achieve sustainable range management and avoid or minimize environmental contamination, the Army needs to know the amount of explosives deposited on ranges from different munitions and how these are degraded and transported under different geological and climatic conditions. The physical form of the deposited explosives has a bearing on this problem, yet the shapes and size distributions of the explosive particles remaining after detonations are not known. We collected residues from 8 high-order and 6 low-order non-tactical detonations of TNT-filled 155-mm rounds. We found significant variation in the amount of TNT scattered from the high-order detonations, ranging from 0.00001 to 2% of the TNT in the original shell. All low-order detonations scattered percent-level amounts of TNT. We imaged thousands of TNT particles and determined the size, mass and surface-area distributions of particles collected from one high-order and one low-order detonation. For the high-order detonation, particles smaller than 1 mm contribute most of the mass and surface area of the TNT scattered. For the low-order detonation, most of the scattered TNT mass was in the form of un-heated, centimeter-sized pieces whereas most of the surface area was again from particles smaller than 1 mm. We also observed that the large pieces of TNT disintegrate readily, giving rise to many smaller particles that can quickly dissolve. We suggest picking up the large pieces of TNT before they disintegrate to become point sources of contamination.