Cluster detection using Bayes factors from overparameterized cluster models

In this paper, we consider the use of a partition model to estimate regional disease rates and to detect spatial clusters. Formal inference regarding the number of partitions (or clusters) can be obtained with a reversible jump Markov chain Monte Carlo algorithm. As an alternative, we consider the ability of models with a fixed, but overly large, number of partitions to estimate regional disease rates and to provide informal inferences about the number and locations of clusters using local Bayes factors. We illustrate and compare these two approaches using data on leukemia incidence in upstate New York and data on breast cancer incidence in Wisconsin.     

Changes in functional structure of soil bacterial communities due to fungicide and insecticide applications in canola

The fungicide vinclozolin and insecticide λ-cyhalothrin are widely used to control canola (Brassica spp.) diseases and insect pests, respectively, in Canada. We investigated non-target effects of these pesticides, applied at recommended rates, on soil microbial biomass, functional bacterial diversity and functional community structure of soil bacteria (by evaluating patterns of C substrate utilization) in canola rhizosphere and bulk soil at three locations in Alberta from 2002 to 2004. Experimental treatments were (a) untreated control, (b) vinclozolin fungicide foliar application, (c) λ-cyhalothrin insecticide foliar application, and (d) vinclozolin and λ-cyhalothrin applications. No significant pesticide effects on soil microbial biomass or functional bacterial diversity were observed, but the functional structures of soil bacteria were altered. In 1 of 12 cases, the control treatment had a different soil bacterial community structure from the 3 pesticide treatments. The fungicide treatment had different bacterial community structures from the control or insecticide treatments in 3 of 12 cases, the insecticide treatment had different community structures from the control or fungicide treatments in 4 of 12 cases, and the combined fungicide and insecticide treatment had different community structures from the other treatments in 3 of 12 cases. Therefore, evaluating soil bacterial functional structures revealed pesticide effects that were not detected when bacterial diversity or microbial biomass were measured in canola rhizosphere or bulk soil.     

Soil microbial response to herbicides applied to glyphosate-resistant canola

Adoption of glyphosate-resistant canola (Brassica napus L.) has increased glyphosate applications to this crop, and concerns have been raised about unintended consequences of these multiple applications. A field trial was conducted to evaluate the effects of pre-seed and in-crop glyphosate and alternative herbicides on soil microbial community functional structure, diversity and biomass. Pre-seed treatments were 2,4-D, glyphosate and 2,4-D + glyphosate, and in-crop treatments were glyphosate applied once, glyphosate applied twice, ethalfluralin, ethalfluralin + sethoxydim + ethametsulfuron + clopyralid, and sethoxydim + ethametsulfuron. Rhizosphere and bulk soil was collected at flowering stage of canola and analyzed for bacterial community-level substrate utilization patterns and microbial biomass C (MBC). Where differences were significant, pre-seed application of both 2,4-D and glyphosate altered the functional structure and reduced the functional diversity of soil bacteria, but increased MBC. These effects were not necessarily concurrent. The reduction in functional diversity was due to reduction in evenness, which means that the soil where both pre-seed herbicides had been applied was dominated by only few functional groups. In 1 year, two in-crop applications of glyphosate also reduced the functional diversity of soil bacteria when applied after pre-seed 2,4-D, as did in-crop sethoxydim + ethametsulfuron following pre-seed glyphosate. Even though significant differences between herbicides were fewer than non-significant differences, i.e., there were no changes in soil microbial community structure, diversity or biomass in response to glyphosate or alternative herbicides applied to glyphosate-resistant canola in most cases, the observed changes in soil microbial communities could affect soil food webs and biological processes.     

BENEFITS FROM MANAGING FARM PRODUCED NUTRIENTS1

Manures and fertilizers are applied to agricultural lands in excess of recommended amounts, resulting in widespread pollution of surface and ground water and contributing a substantial source of greenhouse gases associated with global warming. By developing policies that exploit the value of farm produced nutrients, input costs can be minimized. Better accounting for or crediting of farm produced nutrients is leading to economically beneficial conservation of fertilizer. In addition, hog producers who own enough land may benefit from properly managing manure nutrients. Poultry litter is valuable as fertilizer and can be marketed by independent dealers to farmers in nutrient deficit areas, with very modest assistance from the government. Dairy producers may modify their past income support programs to finance central compost facilities. Although nutrient problems were neglected in the past, recent Federal initiatives and joint initiatives with states exploit many of these and other opportunities to avoid excessive application of nutrients to the land.     

Food offering in jackdaws (<Emphasis Type="Italic">Corvus monedula</Emphasis>)

Food sharing among unrelated same-sex individuals has received considerable interest from primatologists and evolutionary biologists because of its apparent altruistic nature and implications for the evolution of complex social cognition. In contrast to primates, food sharing in birds has received relatively little attention. Here we describe three types of food sharing in jackdaws, with the initiative for the transfer either with the receiver or the giver. The latter situation is of particular interest because the food transfer takes place through active giving. Compared to primates, jackdaws show high rates of food sharing. Finally we discuss the implications of food sharing in jackdaws, and in birds in general.     

Road development, housing growth, and landscape fragmentation in northern Wisconsin: 1937-1999.

Roads remove habitat, alter adjacent areas, and interrupt and redirect ecological flows. They subdivide wildlife populations, foster invasive species spread, change the hydrologic network, and increase human use of adjacent areas. At broad scales, these impacts cumulate and define landscape patterns. The goal of this study was to improve our understanding of the dynamics of road networks over time, and their effects on landscape patterns, and identify significant relationships between road changes and other land-use changes. We mapped roads from aerial photographs from five dates between 1937 and 1999 in 17 townships in predominantly forested landscapes in northern Wisconsin, U.S.A. Patch-level landscape metrics were calculated on terrestrial area outside of a 15-m road-effect zone. We used generalized least-squares regression models to relate changes in road density and landscape pattern to concurrent changes in housing density. Rates of change and relationships were compared among three ecological regions. Our results showed substantial increases in both road density and landscape fragmentation during the study period. Road density more than doubled, and median, mean, and largest patch size were reduced by a factor of four, while patch shape became more regular. Increases in road density varied significantly among ecological subsections and were positively related to increases in housing density. Fragmentation was largely driven by increases in road density, but housing density had a significantly positive relationship with largest patch area and patch shape. Without protection of roadless areas, our results suggest road development is likely to continue in the future, even in areas where road construction is constrained by the physical environment. Recognizing the dynamic nature of road networks is important for understanding and predicting their ecological impacts over time and understanding where other types of development are likely to occur in the future. Historical perspectives of development can provide guidance in prioritizing management efforts to defragment landscapes and mitigate the ecological impacts of past road development.     

Chemical aspects of mass spawning in corals. I. Sperm-attractant molecules in the eggs of the scleractinian coral Montipora digitata

This paper provides the first evidence for sperm chemotaxis in the Scleractinia. Montipora digitata Dana, 1845 (Scleractinia: Coelenterata) is a hermaphroditic coral which reproduces bi-annually, releasing egg-sperm bundles during the mass spawning at Magnetic Island (19°10S; 146°52E) in late spring-early summer, and autumn each year. The buoyant egg-sperm bundles float to the surface where they break apart, releasing eggs and sperm into the ocean. Fertilisation occurs after 30 min. Unfertilized eggs were collected, washed free of sperm, and freeze-dried. The eggs were extracted with dichloromethane, fractionated by chromatography on silica gel, and the fractions assayed for their ability to attract M. digitata sperm. The active fraction was further fractionated by high-performance liquid chromatography, resulting in the isolation of three highly unsaturated fatty alcohols: (1) dodeca-2,4-diynol; (2) tetradec-13-ene-2,4-diynol; (3) (14Z)-heptadeca-14,16-diene-2,4-diynol. Of these three compounds, only Compound 1 attracted sperm of M. digitata. Synthetic Compound 1, produced from simple precursors by known reactions, possessed sperm-attracting activity comparable to the naturally derived attractant. Preliminary experiments suggest that the natural mixture of Compounds 1, 2 and 3 in the ratio 1:4:9 is more effective in attracting sperm from M. digitata than sperm from other Montipora species. Sperm attractants may act to reduce the incidence of hybridisation between different species of Montipora.     

The morphology,anatomy and life history of a complanate form of Scytosiphon lomentaria (Scytosiphonales,Phaeophyta) from southern Australia

Complanate Scytosiphon lomentaria (Lyngbye) J. Agardh is characterised and distinguished from the typical cylindrical form by a flattened thallus, plurilocular sporangia having a mucilaginous covering layer, and an autumn-spring seasonal growth pattern. Cultural studies show that zooids from the plurilocular sporangia give rise to an independent ralfsioid stage, to ralfsioid plethysmothalli bearing complanate fronds, and to a cylindrical form of S. lomentaria. In culture, the complanate thalli are initiated only in short-day conditions, cylindrical thalli are initiated in both short- and long-day conditions. Ralfsioid thalli are of two kinds: one developing independently of day length, the other developing only during long days; the alternative short-day thallus form is complanate.