Extraction of DNA from amniotic fluid cells for the early prenatal diagnosis of genetic disease

Ten-ml samples of amniotic fluid were taken from pregnancies being terminated at 8–14 weeks' gestation. DNA was extracted from the amniotic cells by sequential centrifugation and analysed using the polymerase chain reaction (PCR). Fifteen samples were analysed for evidence of maternal contamination using Mfd5 oligo-nucleotide primers for repeat polymorphisms. Ten amniotic fluid samples were tested for the Delta-F₅₀₈ deletion characteristic of cystic fibrosis to demonstrate a diagnostic application for the technique. In each case, DNA extracted from fetal tissue from the same pregnancy was included in the controls. In 14 of the 15 cases tested with the Mfd5 primers, both the amniotic fluid DNA and the fetal DNA showed no evidence of contaminating DNA. In one case, neither the amniotic fluid cells nor the fetal cells yielded results. In nine of the ten cases tested with the Delta-F₅₀₈ primers, the amniotic fluid cell DNA provided accurate information about the genetic status of the fetus; in the tenth, the fetal DNA failed to amplify. The results indicate that adequate DNA can be extracted from amniotic fluid from 8 weeks' gestation onward and these samples are suitable for prenatal diagnosis using PCR.     

Prenatal diagnosis for dystrophia myotonica using the polymerase chain reaction

The polymerase chain reaction has been used to detect an abundant class of short repeat DNA families of the form (dC-dA)n.(dG-dT)n, known as microsatellites. These units are found throughout the human genome and have been characterized for several loci including APOC2 on chromosome 19ql2-ql3.2. The locus APOC2 is linked to the gene for dystrophia myotonica and a microsatellite within this locus was used to derive polymorphisms in a family to predict the inheritance of the disease. Chorionic villus sampling (CVS) was performed at 151/2 weeks' gestation. Following DNA extraction from the CVS material and parental blood samples, microsatellite analysis was carried out by the polymerase chain reaction.     

Correlation of primary production as measured aboard ship in Southern California Coastal waters and as estimated from satellite chlorophyll images

Chlorophyll images suitable for the regional analysis of the Southern California Bight were obtained by satellite (Nimbus-7 Coastal Zone Color Scanner) on 27 February, 6 March and 11 March 1979. An algorithm to convert satellite chlorophyll data to primary production has been developed. In addition, primary production was measured along with other biological and physical factors from ships cruising in the Southern California Bight during late February and early March 1979. There was fair agreement between shipboard measurements and satellite estimations; for example, primary production (mg carbon m^-2 d^-1) averaged 554 mg from shipboard measurement and 403 mg from satellite estimation when averaged for the entire Bight for the course of the study. The high standard error associated with the variance in productivity index used in our algorithm prevented more accurate conversion of chlorophyll concentrations into primary productivity. However, the synoptic data provided by concurrent ship and satellite measurements can be used to quantify, and perhaps reduce, sampling errors associated with ship sampling alone and to provide estimates of the accuracy of primary productivity on a regional basis.     

Marine food-web analysis: An experimental study of demersal zooplankton using isotopically labelled prey species

Short-term incubations in seawater containing H¹⁴CO₃ ^- or ³H₂O in place of the naturally predominant isotopes can yield highly radioactive preparations of living phytoplankton or zooplankton. Subsequent in situ incubation of these labelled organisms with the community from which they were taken results in the rapid transfer of radioisotope to those species which prey upon them. This technique has been employed to map a portion of a marine food web involving demersal zooplankton; experiments were conducted in summer and autumn on a coral reef and in a subtropical estuary. Similar results were obtained from these initial experiments at each study site during both seasons. Prey supplied as zooplankton (124 to 410 m nominal diameter), which consisted mainly of Oithona oculata, was fed upon by zooplankton size classes ranging from 410 to 850 m and containing amphipods, ostracods, cumaceans and polychaetes. In experiments employing labelled phytoplankton as prey a wide size spectrum was used (10 to 106 m) in order to include representative samples of most of the available planktonic autotrophs as estimated by primary production measurements. In two separate experiments, only 7 out of 63 samples evidenced grazing of phytoplankton by demersal zooplankters. In contrast, labelled diatom auxospores, employed in one experiment as they constituted the most numerically abundant species in the water column, were found to be grazed upon in nearly half the samples examined.     

Dominance,prior occupancy,and winter residency in the great tit (Parus major)

Summary This study reports an aviary experiment aimed at determining what affects social dominance in the great tit (Parus major), especially why older birds (adults) in nature normally dominate younger ones (juveniles). When birds were matched with respect to age, prior residency determined dominance. Without a difference in prior residency older birds dominated younger ones. However, when juvenile birds had a prior residency advantage over adult birds, they often became dominant. This was especially so when the juvenile bird was large relative to the adult bird. When a resident juvenile male was also consorted by a female, he became dominant over an adult male on most occasions. An experiment where the dominant bird was removed and later returned to the aviary failed to produce more than one shift in dominance. However, the proportion of reversals in dominance interactions increased with separation time. It is argued that the fact that dominance depends on prior residency selects for winter residency in the great tit.Offprint requests to: H.G. Smith     

Facilitating resilient rural-to-urban sustainable agriculture and rural communities

ABSTRACT

This article contributes to efforts to validate a common set of parameters and principles of sustainable agriculture. Comparisons between alternative forms of sustainable agriculture and rural-to-urban community resilience are investigated. Conclusions are drawn between multiple sustainable/alternative agriculture systems and evaluated. A set of common baseline parameters and principles is proposed as a method of evolving a common structural framework for strengthening sustainability of agriculture and rural contexts. Concepts of rural-to-urban community sustainability are proposed, supporting sustainable agriculture contexts as rural and urban. In the twenty-first century, agriculture is becoming more diversified and less typified as a rural occupation. Urban agriculture is expanding as the need for fresh, affordable, accessible agriculture produce increases in urban areas. Evidence supports symbiotic relationships between sustainable agriculture and rural/urban communities, although some claim this relationship has not been clearly defined.

This article investigates sustainable agriculture from two perspectives. We ask ‘what are common parameters and principles of the various forms of sustainable agriculture,’ and ‘why urban-to-rural context.’ Organic agriculture parameters and principles are proposed as a conceptual framework toward establishing baseline parameters and principles for sustainable agriculture. Best management parameters of urban and rural sustainable agriculture in the United States and the United Kingdom are examined for their potential to develop a strengthening framework of parameters and principles of agriculture and rural-to-urban sustainability. These results are compared and evaluated for their effectiveness in redefining current sustainable agriculture practices, and their value in strengthening sustainable agriculture symbiosis with rural-to-urban community systems.     

Selection and application of a rainbow trout toxicity testing procedure for screening Sacramento River Watershed, California samples

A number of procedures have been developed to assess toxic effects on the early life stages of salmonid fish. In this study 13 rainbow trout embryo development relatively short-term (7 to 90 day) procedures were reviewed. Three 7-day methods from the published literature and three modifications developed at AQUA-Science (A-S) were evaluated in the laboratory. Based on that evaluation, A-S methods were selected for screening surface water samples (A-S 1) collected in the Sacramento River watershed (California) and for conducting toxicity identification evaluations (TIE) to identify cause(s) of toxicity. Test control performance, test sensitivity, and reference toxicant response variability in the A-S 1 were superior to those in commonly used freshwater toxicity testing methods. The incidence of Sacramento River watershed samples resulting in a notable decrease in embryo development was very low. Of 260 samples screened only 16 (6%) resulted in statistically significant inhibition of embryo development. Of the 16 toxic samples, nine caused minimal (less than 20% abnormal development) and four marginal (less than 30%) toxicity. Samples collected from the agriculture-dominated Colusa Basin Drain and rangeland/forest-dominated Battle Creek on June 16, 2005 caused significant toxicity. TIE procedures indicated that cationic chemicals were the primary cause of toxicity. Metals analysis did not reveal concentrations sufficient to inhibit embryo development, so the most probable cause of toxicity in the two samples was cationic chemicals (perhaps surfactants?) or metals that were not included in the analytical screening.