Distribution of quinolone and macrolide resistance genes and their co-occurrence with heavy metal resistance genes in vegetable soils with long-term application of manure

The spread of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) has become an increasingly serious global public health issue. This study investigated the distribution characteristics and influencing factors of ARB and ARGs in greenhouse vegetable soils with long-term application of manure. Five typical ARGs, four heavy metal resistance genes (MRGs), and two mobile genetic elements (MGEs) were quantified by real-time quantitative polymerase chain reaction (qPCR). The amount of ARB in manure-improved soil greatly exceeded that in control soil, and the bacterial resistance rate decreased significantly with increases in antibiotic concentrations. In addition, the resistance rate of ARB to enrofloxacin (ENR) was lower than that of tylosin (TYL). Real-time qPCR results showed that long-term application of manure enhanced the relative abundance of ARGs in vegetable soils, and the content and proportion of quinolone resistance genes were higher than those of macrolide resistance genes. Redundancy analysis (RDA) showed that qepA and qnrS significantly correlated with total and available amounts of Cu and Zn, highlighting that certain heavy metals can influence persistence of ARGs. Integrase gene intI1 correlated significantly with the relative abundance of qepA, qnrS, and ermF, suggesting that intI1 played an important role in the horizontal transfer of ARGs. Furthermore, there was a weakly but not significantly positive correlation between specific detected MRGs and ARGs and MGEs. The results of this study enhance understanding the potential for increasing ARGs in manure-applied soil, assessing ecological risk and reducing the spread of ARGs.

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Defenses and refuges: alternative mechanisms of coexistence between a predatory gastropod and its ascidian prey

Only five of the 14 species of solitary ascidians in the San Juan Islands, Washington, USA commonly co-occur with an abundant predator of the rocky subtidal, the gastropod Fusitriton oregonensis. None of the common subtidal species is defended by vanadium or sulfuric acid; concentrations of these substances are highest in species that are eaten readily by F. oregonensis and are uncommon in the rocky subtidal. Experimental manipulations indicate that Halocynthia igaboja are protected by stiff spines of the tunic. The defense mechanism of Pyura haustor consists of a tough, leathery tunic with inorganic inclusions, and microscopic spines around the siphons. Boltenia villosa and Styela gibbsii are eaten by snails in the laboratory, but live in areas where the predator is abundant. Both find refuge as epizooites on P. haustor and H. igaboja. The mechanisms by which Cnemidocarpa finmarkiensis persists in the presence of F. oregonensis is unknown.     

Roads and the Environmental Degradation of Tropical Montane Forests

Roads are often a causal agent in the degradation of tropical forests; in this paper their impact is discussed for the forested, humid montane zone. Because of their steep slopes and high elevations, these forests have disturbance regimes associated with slope instability, limited resilience, and numerous species that are elevational specialists, restricted to narrow altitudinal belts. Roads often augment slope instability and fragment ranges of specialized species. Roads can allow uncontrolled extraction of natural products and landscape conversion. Improvements are needed in the design, construction, and maintenance of these roads. Also needed are studies and mitigation efforts to reduce their effects on the specialized biota of montane forests.     

Eyes and extraocular photoreceptors in midwater cephalopods and fishes: Their roles in detecting downwelling light for counterillumination

The means of detecting downwelling light for counterillumination in several midwater animals has been examined. Eyes and extraocular photoreceptors (drosal photosensitive vesicles in the enoploteuthid squid Abraliopsis sp. B and pineal organs in the myctophid fish Myctophum spinosum) were alternately exposed to overhead light or covered by a small opaque shield above the animal and the bioluminescent response of the animal was monitored. Covering either the eyes or the extraocular photoreceptors resulted in a reduction in the intensity of counterillumination. Preliminary experiments examining the bioluminescent feedback mechanism for monitoring intensity of bioluminescence during counterillumination in the midwater squid Abralia trigonura indicated that the ventral photosensitive vesicles are responsible for bioluminescent feedback.     

Embryogenesis and larval biology of the ahermatypic scleractinian<Emphasis Type="Italic"> Oculina varicosa</Emphasis>

The ivory tree coral Oculina varicosa (Leseur, 1820) is an ahermatypic branching scleractinian that colonizes limestone ledges at depths of 6–100 m along the Atlantic coast of Florida. This paper describes the development of embryos and larvae from shallow-water O. varicosa, collected at 6–8 m depth in July 1999 off Fort Pierce, Florida (27°32.542 N; 79°58.732 W). The effect of temperature on embryogenesis, larval survival, and larval swimming speed were examined in the laboratory. Ontogenetic changes in geotaxis and phototaxis were also investigated. Embryos developed via spiral cleavage from small (100 µm), negatively buoyant eggs. Ciliated larvae developed after 6–9 h at 25°C. Embryogenesis ceased at 10°C, was inhibited at 17°C, and progressed normally at 25°C and 30°C. Larval survival, however, was high across the full range of experimental temperatures (11–31°C), although mortality increased in the warmest treatments (26°C and 31°C). Larval swimming speed was highest at 25°C, and lower at the temperature extremes (5°C and 35°C). An ontogenetic change in geotaxis was observed; newly ciliated larvae swam to the water surface and remained there for approximately 18 h, after which they swam briefly throughout the water column, then became demersal. Early larvae showed no response to light stimulation, but at 14 and 23 days larvae appeared to exhibit negatively phototactic behavior. Although low temperatures inhibited the development of O. varicosa embryos, the larvae survived temperature extremes for extended periods of time. Ontogenetic changes in larval behavior may ensure that competent larvae are close to the benthos to facilitate settlement. Previous experiments on survival, swimming speeds, and observations on behavior of O. varicosa larvae from deep-water adults indicate that there is no difference between larvae of the deep and shallow populations.Communicated by J.P. Grassle, New Brunswick     

Feeding habits and phenotypic changes in proboscis length in the southern oyster drill, Stramonita haemastoma (Gastropoda: Muricidae), on Florida sabellariid worm reefs

The southern oyster drill, Stramonita (= Thais, Kool 1987) haemastoma, is a common intertidal and subtidal predator in the southeastern United States. It uses specialized feeding structures and foraging strategies to bore holes through the shell of its bivalve prey. However, on the east coast of Florida, S. haemastoma, is common on sabellariid worm reefs constructed by the polychaete Phragmatopoma lapidosa (Walton Rocks Beach, Florida, 27°17′N, 80°12′W), a habitat where the snail’s typical prey are scarce. From 1999 to 2001, we examined the feeding habits of S. haemastoma on sabellariid reefs and the behavioral and morphological responses of S. haemastoma that accompanied switching from a diet of bivalves to sabellariids. On worm reefs S. haemastoma feeds on P. lapidosa by inserting the proboscis deep into a worm’s tube. Worm-feeding snails had longer proboscises (~3.7 times shell height) than bivalve-feeding conspecifics (~2.0 times shell height). Snails raised on different diets showed significant differences in proboscis length suggesting that the proboscis length is phenotypically plastic. Whereas typical oyster drills must bore holes for days before ingesting prey, S. haemastoma on worm reefs avoids boring and attacks and consumes worms in 15–50 min. In the laboratory, oyster drills consumed 1.7 worms per day, spending <1 h each day feeding. On sabellariid reefs, differences in feeding, handling costs, and prey value, are likely to have a significant effect on the ecology and life history of S. haemastoma in this habitat.     

Matrix effects in applying mono- and polyclonal ELISA systems to the analysis of weathered oils in contaminated soil

Commercial mono- and polyclonal enzyme-linked immunosorbent assay (ELISA) systems were applied to the on-site analysis of weathered hydrocarbon-contaminated soils at a former integrated steelworks. Comparisons were made between concentrations of solvent extractable matter (SEM) determined gravimetrically by Soxhlet (dichloromethane) extraction and those estimated immunologically by ELISA determination over a concentration range of 2000-330,000 mg SEM/kg soil dry weight. Both ELISA systems tinder-reported for the more weathered soil samples. Results suggest this is due to matrix effects in the sample rather than any inherent bias in the ELISA systems and it is concluded that, for weathered hydrocarbons typical of steelworks and coke production sites, the use of ELISA requires careful consideration as a field technique. Consideration of the target analyte relative to the composition of the hydrocarbon waste encountered appears critical.     

Anthropogenic metal enrichment of snow and soil in north-eastern European Russia

Trace metal composition of winter snowpack, snow-melt filter residues and top-soil samples were determined along three transects through industrial towns in the Usa basin, North-East Russia: Inta, Usinsk and Vorkuta. Snow was analysed for Ag, Al, As, Ba, Cd, Co, Cr, Cu, Mn, Ni, Pb, Sr and Zn using ICP-MS (Ca and K by F-AAS for Vorkuta only), pH and acidity/alkalinity. Filter residues were analysed for: Al, Ba, Ca, Cd, Cu, K, Mg, Mn, Ni, Pb, Sr and Zn using F-AAS and GF-AAS; top-soil samples were analysed for Ba, Cu, Mg, Mn, Na, Ni, Pb, Sr, Zn using F-AAS. Results indicate elevated concentrations of elements associated with alkaline combustion ash around the coal mining towns of Vorkuta and Inta. There is little evidence of deposition around the gas and oil town of Usinsk. Atmospheric deposition in the vicinity of Vorkuta, and to a lesser extent Inta, added significantly to the soil contaminant loading as a result of ash fallout. Acid deposition was associated with pristine areas whereas alkaline combustion ash near to emission sources more than compensated for the acidity caused by SO2.     

Removal of ammonia by biofilters: a study with flow-modified system and kinetics

The characteristics of ammonia removal by two types of biofilter (a standard biofilter with vertical gas flow and a modified biofilter with horizontal gas flow) were investigated. A mixture of organic materials such as compost, bark, and peat was used as the biofilter media based on the small-scale column test for media selection. Complete removal capacity, defined as the maximum inlet load of ammonia that was completely removed, was obtained. The modified biofilter showed complete removal up to 1.0 g N/kg dry material/day. However, the removal capacity of the standard biofilter started to deviate from complete removal around 0.4 g N/kg dry material/day, indicating that the modified biofilter system has higher removal efficiency than the standard upflow one. In kinetic analysis of the biological removal of ammonia in each biofilter system, the maximum removal rate, Vm, was 0.93 g N/kg dry material/day and the saturation constant, Ks, was 32.55 ppm in the standard biofilter. On the other hand, the values of Vm and Ks were 1.66 g N/kg dry material/day and 74.25 ppm, respectively, in the modified biofilter system.