The arcsine is asinine: the analysis of proportions in ecology

The arcsine square root transformation has long been standard procedure when analyzing proportional data in ecology, with applications in data sets containing binomial and non-binomial response variables. Here, we argue that the arcsine transform should not be used in either circumstance. For binomial data, logistic regression has greater interpretability and higher power than analyses of transformed data. However, it is important to check the data for additional unexplained variation, i.e., overdispersion, and to account for it via the inclusion of random effects in the model if found. For non-binomial data, the arcsine transform is undesirable on the grounds of interpretability, and because it can produce nonsensical predictions. The logit transformation is proposed as an alternative approach to address these issues. Examples are presented in both cases to illustrate these advantages, comparing various methods of analyzing proportions including untransformed, arcsine- and logit-transformed linear models and logistic regression (with or without random effects). Simulations demonstrate that logistic regression usually provides a gain in power over other methods.     

Factors influencing survival duration and choice of virgin queens in the stingless bee Melipona quadrifasciata

In Melipona quadrifasciata, about 10 % of the females develop into queens, almost all of which are killed. Occasionally, a new queen replaces or supersedes the mother queen or heads a new colony. We investigated virgin queen fate in queenright and queenless colonies to determine the effects of queen behaviour, body mass, nestmate or non-nestmate status, queenright or queenless colony status, and, when queenless, the effect of the time a colony had been queenless, on survival duration and acceptance. None of 220 virgin queens observed in four observation hives ever attacked another virgin queen nor did any of 88 virgin queens introduced into queenright colonies ever attack the resident queen. A new queen was only accepted in a queenless colony. Factors increasing survival duration and acceptance of virgin queens were to emerge from its cell at 2 h of queenlessness, to hide, and to avoid fights with workers. In this way, a virgin queen was more likely to be available when a colony chooses a new queen, 24-48 h after resident queen removal. Running, walking or resting, antennating or trophallaxis, played little or no role, as did the factors body mass or nestmate. “Queen choice” took about 2 h during which time other virgin queens were still being killed by workers. During this agitated process, the bees congregated around the new queen. She inflated her abdomen and some of the workers deposited a substance on internal nest surfaces including the glass lid of the observation hive.     

Hydrogeochemical investigations to assess groundwater and saline water interaction in coastal aquifers of the southeast coast,Tamil Nadu,India

Environmental Science and Pollution Research - Groundwater and saline water interaction is the most common processes in the coastal aquifers that alters the quality of aquifer waters. The...     

Stream biodiversity and monitoring in North Central,Nigeria: the use of macroinvertebrate indicator species as surrogates

Indicator species (IS) have been employed in modern aquatic research for monitoring of environmental changes and evaluating the efficiency of environmental management procedures. In this study, we evaluated the possibility of developing surrogate indicator groups as tools for the conservation and management of the biodiversity of Northern Nigeria streams by surveying 15 streams in Niger state for benthic macroinvertebrates and environmental variables as data sets, over a period of 24 months (2016 and 2017). Samples were collected in two locations of reference and impacted sites for each of the streams surveyed. The statistically significant (P < 0.05; based on 1000 permutations) indicator species for each of the status classes (reference versus impacted) was identified using the indicator species analysis/indicator value (Indval) method. Canonical correspondence analysis (CCA) was used to evaluate the IS-environment relationships. Indicator value found fifteen species for the reference streams including Ephemeropteran (Bugilliesia sp., Tricorythus sp., Thraulus sp., Crassabwa sp.) and the Tricopteran (Leptonema sp.). Opposite, the Indval found seven (7) indicator species for the impacted streams, which included the Dipteran (Pentaneura sp., Tabanus sp.). Multivariate analysis revealed that species assemblage had wide dispersal patterns in relation to the sites for both status classes. CCA revealed that the reference and impacted indicator species responded to entirely different environmental factors, indicating their preference to particular environmental variables along the ecological gradients. While the indicator species of reference sites were associated with environmental predictors of good water quality such as high DO, increased flow, low conductivity, and low BOD, the indicator species of impacted sites were strongly related to environmental predictors of anthropogenic pollution, including low DO, high BOD, and increased nutrients concentrations. This study has provided a reference point and effective tool to monitor environmental changes, community, and ecosystem dynamics across the Northern Nigeria streams.

     

Quantitative catchment profiling to apportion faecal indicator organism budgets for the Ribble system, the UK's sentinel drainage basin for Water Framework Directive research

Under the EU Water Framework Directive (WFD) 20/60/EC and the US Federal Water Pollution Control Act 2002 management of water quality within river drainage basins has shifted from traditional point-source control to a holistic approach whereby the overall contribution of point and diffuse sources of pollutants has to be considered. Consequently, there is a requirement to undertake source-apportionment studies of pollutant fluxes within catchments. The inclusion of the Bathing Water Directive (BWD), under the list of 'protected areas' in the WFD places a requirement to control sources of faecal indicator organisms within catchments in order to achieve the objectives of both the BWD (and its revision - 2006/7/EC) and the WFD. This study was therefore initiated to quantify catchment-derived fluxes of faecal indicator compliance parameters originating from both point and diffuse sources. The Ribble drainage basin is the single UK sentinel WFD research catchment and discharges to the south of the Fylde coast, which includes a number of high profile, historically non-compliant, bathing waters. Faecal indicator concentrations (faecal coliform concentrations are reported herein) were measured at 41 riverine locations, the 15 largest wastewater treatment works (WwTWs) and 15 combined sewer overflows (CSOs) across the Ribble basin over a 44-day period during the 2002 bathing season. The sampling programme included targeting rainfall-induced high flow events and sample results were categorised as either base flow or high flow. At the riverine sites, geometric mean faecal coliform concentrations showed statistically significant elevation at high flow compared to base flow. The resultant faecal coliform flux estimates revealed that over 90% of the total organism load to the Ribble Estuary was discharged by sewage related sources during high flow events. These sewage sources were largely related to the urban areas to the south and east of the Ribble basin, with over half the load associated with the relatively small subcatchment of the River Douglas. The majority of this load was attributed to two WwTWs that discharge through a common outfall close to the tidal limit of this catchment. Budgets adjusted to accommodate the impact of proposed UV disinfection of these effluents showed that the load from these sources would be reduced significantly during base flow conditions. However, during high flow events loads would still remain high due to the operation of storm sewage overflows from stormwater retention tanks. The study identified untreated storm sewage spills from urban infrastructure and WwTW stormwater retention tanks as the dominant component of the high flow flux of faecal indicators to receiving waters of the Fylde coast and the associated bathing waters.     

Passing the Panda Standard: A TAD Off the Mark?

Tilapia, a tropical freshwater fish native to Africa, is an increasingly important global food commodity. The World Wide Fund for Nature (WWF), a major environmental nongovernmental organization, has established stakeholder dialogues to formulate farm certification standards that promote “responsible” culture practices. As a preface to its “tilapia aquaculture dialogue,” the WWF for Nature commissioned a review of potential certification issues, later published as a peer-reviewed article. This article contends that both the review and the draft certification standards subsequently developed fail to adequately integrate critical factors governing the relative sustainability of tilapia production and thereby miss more significant issues related to resource-use efficiency and the appropriation of ecosystem space and services. This raises a distinct possibility that subsequent certification will promote intensive systems of tilapia production that are far less ecologically benign than existing widely practiced semi-intensive alternatives. Given the likely future significance of this emergent standard, it is contended that a more holistic approach to certification is essential.     

Prior experience with eggs laid by non-nestmate queens induces egg acceptance errors in ant workers

We studied the effect of prior experience to eggs laid by nestmate and non-nestmate queens on the acceptance of queen-laid eggs by worker wood ants, Formica fusca. We transferred eggs from a non-nestmate queen into colonies during early spring, when their own queen was recommencing egg laying. A few weeks later, workers from these “experienced” colonies accepted eggs of both familiar (44% acceptance) and unfamiliar (40%) non-nestmate queens much more than workers from control colonies (2%) that had only had previous contact with their own queen’s eggs. Thus, prior exposure to eggs laid by a non-nestmate queen induces much greater acceptance of all non-nestmate queen-laid eggs. Mechanistically, we hypothesize that exposure to eggs from several queens may increase acceptance by causing a highly permissive acceptance threshold of non-nestmate queen-laid eggs rather than by widening the template for acceptable queen-laid eggs. These novel results show that egg-discrimination behaviour in F. fusca is flexible and that workers respond to the diversity of eggs experienced in their colony.     

Correlates of group size in a cooperatively breeding cichlid fish (Neolamprologus pulcher)

Neolamprologus pulcher, a cooperatively breeding cichlid fish from Lake Tanganyika, lives in permanent social groups comprising one breeding pair and helpers of both sexes. Variation in group size (1-14 helpers) provides an opportunity to investigate factors that affect how many helpers remain in a group and in turn how group size affects reproductive success. This field study showed that larger groups live in larger territories with more shelter. Group size was more strongly correlated with territory quality than with breeder size. Experimental enhancement of territory quality did not affect group size but group size decreased when territory quality was reduced. Breeders living in a large group benefit because such individuals feed more often and have lower workloads and greater reproductive success. Helpers in larger groups also fed more frequently but did not have lower workloads. This is one of the first experimental studies to examine the factors influencing group size in cooperative breeders.