Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

Oxygen minimum zones (OMZs) are natural physical features of the world's oceans. They create steep physiochemical gradients in the water column, which most notably include a dramatic draw down in oxygen concentrations over small vertical distances (<100 m). Microbial communities within OMZs play central roles in ocean and global biogeochemical cycles, yet we still lack a fundamental understanding of how microbial biodiversity is distributed across OMZs. Here, we used metagenomic sequencing to investigate microbial diversity across a vertical gradient in the water column during three seasons in the Eastern Tropical South Pacific (ETSP) OMZ. Based on analysis of small subunit ribosomal RNA (SSU rRNA) gene fragments, we found that both taxonomic and phylogenetic diversity declined steeply along the transition from oxygen-rich surface water to the permanent OMZ. We observed similar declines in the diversity of protein-coding gene categories, suggesting a decrease in functional (trait) diversity with depth. Metrics of functional and trait dispersion indicated that microbial communities are phylogenetically and functionally more overdispersed in oxic waters, but clustered within the OMZ. These dispersion patterns suggest that community assembly drivers (e.g., competition, environmental filtering) vary strikingly across the oxygen gradient. To understand the generality of our findings, we compared OMZ results to two marine depth gradients in subtropical oligotrophic sites and found that the oligotrophic sites did not display similar patterns, likely reflecting unique features found in the OMZ. Finally, we discuss how our results may relate to niche theory, diversity-energy relationships and stress gradients.     

Spatial scale of similarity as an indicator of metacommunity stability in exploited marine systems

The spatial scale of similarity among fish communities is characteristically large in temperate marine systems: connectivity is enhanced by high rates of dispersal during the larval/juvenile stages and the increased mobility of large-bodied fish. A larger spatial scale of similarity (low beta diversity) is advantageous in heavily exploited systems because locally depleted populations are more likely to be "rescued" by neighboring areas. We explored whether the spatial scale of similarity changed from 1970 to 2006 due to overfishing of dominant, large-bodied groundfish across a 300 000-km2 region of the Northwest Atlantic. Annually, similarities among communities decayed slowly with increasing geographic distance in this open system, but through time the decorrelation distance declined by 33%, concomitant with widespread reductions in biomass, body size, and community evenness. The decline in connectivity stemmed from an erosion of community similarity among local subregions separated by distances as small as 100 km. Larger fish, of the same species, contribute proportionally more viable offspring, so observed body size reductions will have affected maternal output. The cumulative effect of nonlinear maternal influences on egg/larval quality may have compromised the spatial scale of effective larval dispersal, which may account for the delayed recovery of certain member species. Our study adds strong support for using the spatial scale of similarity as an indicator of metacommunity stability both to understand the spatial impacts of exploitation and to refine how spatial structure is used in management plans.     

Chemical investigations of defensive steroid sequestration by the Asian snake Rhabdophis tigrinus

Rhabdophis tigrinus is an Asian natricine snake that possesses unusual defensive glands on the dorsal surface of its neck. These nuchal glands typically contain cardiotonic steroidal toxins known as bufadienolides, which are also abundant in the skin of toads. Feeding experiments demonstrated that toads consumed as prey are the ultimate sources of the bufadienolides in nuchal glands of R. tigrinus. Indeed, snakes on a toad-free Japanese island (Kinkasan, Miyagi Prefecture) lack these compounds in their nuchal glands, confirming that these snakes are unable to synthesize defensive bufadienolides. However, when snakes from Kinkasan are fed toads in the laboratory, they accumulate bufadienolides in their nuchal glands, indicating that they have not lost the ability to sequester defensive compounds from prey. In contrast, R. tigrinus from a toad-rich island (Ishima, Tokushima Prefecture) possess large quantities of bufadienolides, reflecting the abundance of toads from which these compounds can be sequestered. Feeding experiments involving gravid R. tigrinus demonstrated that bufadienolides can be provisioned to offspring so that hatchlings are chemically defended before their first toad meal. Maternal provisioning of bufadienolides can take place through two routes: by deposition in yolk and by diffusion in utero, even late in gestation. We applied bufadienolides to the surface of eggs from Kinkasan and found that the embryos are able to take up these compounds into their nuchal glands, demonstrating the feasibility of uptake across the eggshell. Female R. tigrinus provision bufadienolides to their offspring in direct proportion to their own level of chemical defense. By feeding toad-derived bufotoxins to R. tigrinus hatchlings, we determined that the sequestration of these compounds involves at least three types of modification: hydrolytic cleavage of suberylarginine side chains, hydroxylation, and epimerization.     

使用Xevo TQ-S和APGC(大气压气相色谱)大幅降低二噁英分析中的样品残留

当有机化合物在含有氯的环境下燃烧时,会产生二噁英和呋喃,例如聚氯乙烯(PVC)生产、纸张漂白过程,以及火山爆发等自然原因.二噁英是剧毒物质,并且具有亲脂性,很容易在多种动物体内积累.它们还是潜在的诱变剂和致癌物质.2,3,7,8-四氯二苯并二噁英(TCDD)结构如下:Xevo TQ-S和大气压气相色谱(APGC)组成了一个非常灵敏的检测系统,可以准确测定出限制浓度的二噁英和呋喃.在分析未知浓度的样品时,可能会检测到浓度非常高的化合物.因此,目标化合物的存在会对下一次进样造成样品残留,进而导致定量结果有误.     

Elevated testosterone advances onset of migratory restlessness in a nearctic-neotropical landbird

The primary cue for initiation of spring migratory restlessness (Zugunruhe) in landbird migrants is photoperiod. Gonadal hormones are known to have a role in the regulation of migratory disposition; however, the extent of their effect is not well understood. We examined the impact of exogenous testosterone on the onset of migratory restlessness in gray catbirds (Dumetella carolinensis). Catbirds were stratified by sex and randomly assigned to two rooms; individuals in one room were photoadvanced to initiate migratory restlessness and the other room was maintained on a 12:12 light/dark photoperiod. Each room had three groups (n?=?10/group); males with testosterone implants, males with empty implants, and females. We predicted that in the photoadvanced room males with testosterone implants would initiate migratory activity earlier than empty-implanted males. We found that in the photoadvanced group, testosterone-implanted males initiated migration 2 weeks prior to empty-implanted males, and 3 weeks prior to females. In the non-photoadvanced males, the testosterone-implanted males initiated migration at the same time as the corresponding group in the photoadvanced room, while the empty-implanted males and females did not exhibit Zugunruhe. Our results illustrate that elevated testosterone can advance the onset of Zugunruhe, even in the absence of an extended photoperiod. Additionally, the onset of migratory restlessness observed in the photoadvanced, non-testosterone-implanted males and females further supports the importance of photoperiod as a cue for migratory restlessness. An interesting observation was the intersexual differences in the onset of migratory activity in gray catbirds, a species not previously known to exhibit protandry.     

Oxidative potential (OP) and mineralogy of iron ore particulate matter at the Gol-E-Gohar Mining and Industrial Facility (Iran)

Concentrations of total suspended particulate matter, particulate matter with aerodynamic diameter <2.5 μm (PM_2.5), particulate matter <10 μm (PM₁₀), and fallout dust were measured at the Iranian Gol-E-Gohar Mining and Industrial Facility. Samples were characterized in terms of mineralogy, morphology, and oxidative potential. Results show that indoor samples exceeded the 24-h PM_2.5 and PM₁₀ mass concentration limits (35 and 150 µg m^?3, respectively) set by the US National Ambient Air Quality Standards. Calcite, magnetite, tremolite, pyrite, talc, and clay minerals such as kaolinite, vermiculite, and illite are the major phases of the iron ore PM. Accessory minerals are quartz, dolomite, hematite, actinolite, biotite, albite, nimite, laumontite, diopside, and muscovite. The scanning electron microscope structure of fibrous-elongated minerals revealed individual fibers in the range of 1.5 nm to 71.65 µm in length and 0.2 nm to 3.7 µm in diameter. The presence of minerals related to respiratory diseases, such as talc, crystalline silica, and needle-shaped minerals like amphibole asbestos (tremolite and actinolite), strongly suggests the need for detailed health-based studies in the region. The particulate samples show low to medium oxidative potential per unit of mass, in relation to an urban road side control, being more reactive with ascorbate than with glutathione or urate. However, the PM oxidative potential per volume of air is exceptionally high, confirming that the workers are exposed to a considerable oxidative environment. PM released by iron ore mining and processing activities should be considered a potential health risk to the mine workers and nearby employees, and strategies to combat the issue are suggested.     

A decade of fluvial morphodynamics: relocation and restoration of the Inde River (North-Rhine Westphalia,Germany)

Background

Relocations and restorations do not only change the ecological passability and sediment continuity of a river but also its flow behavior and fluvial morphodynamics. Sediment transport processes and morphological development can be assessed with field measurements, also taking the transport of sediment-bounded contaminants as a tracer material for fluvial morphodynamics into account. The objective of this study was to determine the morphological development of the Inde River (a tributary of the Rur River in North-Rhine Westphalia, Germany) towards its pre-defined guiding principle after a relocation and restoration in 2005 AD.

Methods

The fluvial morphodynamics of the Inde River were analyzed over a period of almost 15 years taking sediment samples, analyzing echo soundings of the river’s bathymetry and determining the heavy metal content of the sediment as a tracer material for the morphological development.

Results

The results show that the relocation and restoration of the Inde River initiates new hydrodynamic processes, which cause morphological changes of the river widths, meander belts and channel patterns. The riverbed of the new Inde River has incised into the ground due to massive erosion, which has led to increased fine sediment transport in the downstream direction. The reasons for and consequences of this fine sediment transport are discussed and correlated to the sediment continuity of a river.

Conclusions

Overall, the new Inde River has reached its goal of being a natural river as a consequence of the relocation and restoration and has adapted its new conditions towards a dynamic morphological equilibrium.

     

Regionalization of climate scenarios impacts on maize production and the role of cultivar and planting date as an adaptation strategy

Understanding climate change and its impacts on crops is crucial to determine adaptation strategies. Simulations of climate change impacts on agricultural systems are often run for individual sites. Nevertheless, the scaling up of crop model results can bring a more complete picture, providing better inputs for the decision-making process. The objective of this paper was to present a procedure to assess the regional impacts of climate scenarios on maize production, as well as the effect of crop cultivars and planting dates as an adaptation strategy. The focus region is Santa Catarina State, Brazil. The identification of agricultural areas cultivated with annual crops was done for the whole state, followed by the coupling of soil and weather information necessary for the crop modeling procedure (using crop model and regional circulation models). The impact on maize yields, so as the effect of adaptation strategies, was calculated for the 2012–2040 period assuming different maize cultivars and planting dates. Results showed that the exclusion of non-agricultural areas allowed the crop model to correctly simulate local and regional production. Simulations run without adaptation strategies for the 2012–2040 period showed reductions of 11.5–13.5 % in total maize production, depending on the cultivar. By using the best cultivar for each agricultural area, total state production was increased by 6 %; when using both adaptation strategies—cultivar and best planting date—total production increased by 15 %. This analysis showed that cultivar and planting date are feasible adaptation strategies to mitigate deleterious effects of climate scenarios, and crop models can be successfully used for regional assessments.