A uniform fish consumption advisory protocol for the Ohio River

ORSANCO and the six Ohio River main stem states have been working to align states' fish consumption advisories (FCAs) to enhance the value of advice issued to the public. To achieve this goal, ORSANCO worked closely with a panel consisting of state and USEPA representatives. The result of this effort is the Ohio River Fish Consumption Advisory Protocol (ORFCAP). The ORFCAP represents a single set of variables agreed upon by the panel that allows for a standardized protocol to create advisory thresholds to which states can defer to issue consumption advice for the Ohio River. The ORFCAP identifies ORSANCO as a clearinghouse for data which will be distributed to the panel for decision making. Other components include identifying primary contaminants of concern (PCBs and mercury) and dividing the river into four reporting units. The protocol was developed to issue FCAs for the protection of sensitive populations using five advisory groupings for PCBs and four for mercury. Specific variables used in the calculation of advisory thresholds such as health protection values, cooking reductions, average meal sizes, etc., were selected by the panel. Lastly, the protocol calls for FCA decisions to be based on analysis of the most recent 10?years of data for each species in each reporting unit to determine size class needs and advisory groupings. Upon pending implementation of the protocol by the main stem states, these decisions will be made annually through a series of discussions involving ORSANCO, the panel, and other appropriate state personnel.     

Assessing possible visitor-use impacts on water quality in Yosemite National Park, California

There is concern that visitor-use associated activities, such as bathing, dish washing, wastewater production, and stock animal use near lakes and streams, could cause degradation of water quality in Yosemite National Park. A study was conducted during 2004-2007 to assess patterns in nutrient and Escherichia coli (E. coli) concentrations in the Merced and Tuolumne Rivers and characterize natural background concentrations of nutrients in the park. Results indicated that nutrient and E. coli concentrations were low, even compared to other undeveloped sites in the United States. A multiple linear regression approach was used to model natural background concentrations of nutrients, with basin characteristics as explanatory variables. Modeled nitrogen concentrations increased with elevation, and modeled phosphorus concentrations increased with basin size. Observed concentrations (±uncertainty) were compared to modeled concentrations (±uncertainty) to identify sites that might be impacted by point sources of nutrients, as indicated by large model residuals. Statistically significant differences in observed and modeled concentrations were observed at only a few locations, indicating that most sites were representative of natural background conditions. The empirical modeling approach used in this study can be used to estimate natural background conditions at any point along a study reach in areas minimally impacted by development, and may be useful for setting water-quality standards in many national parks.     

Screen-positive rate in cell-free DNA screening for microdeletion 22q11.2

Objective

To examine the impact of the fetal fraction (FF) on the screen-positive rate in screening for microdeletion 22q11.2.

Methods

This study is based on samples that were analyzed using the Harmony® Prenatal Test (Roche Inc). The study cohort comprised samples from women with singleton pregnancies who were at least 16 years old and at least at 11 weeks' gestation. Logistic regression analysis was used to determine significant covariates that carry an impact on the screen-positive rate.

Results

The study population consisted of 52,019 pregnancies, including 309 pregnancies with a high-risk result for microdeletion 22q11.2. Thus, the overall screen-positive rate was 0.59%. In the low-risk group, the FF was 10.1%, and in the high-risk group, it was 7.3%. Regression analysis indicated a strong correlation between the FF and the screen-positive rate. In the cases with an FF of <11.0%, the screen-positive rate was 0.92%, while it was 0.13% in the group with a higher FF.

Conclusion

The screen-positive rate depends on the FF. In order to keep the rate low, we recommend restricting the analysis to samples with a FF of 11% and more.     

Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Multiple sources of predictive uncertainty in modeled estimates of net ecosystem CO2 exchange

Net ecosystem CO₂ exchange (NEE) is typically measured directly by eddy covariance towers or is estimated by ecosystem process models, yet comparisons between the data obtained by these two methods can show poor correspondence. There are three potential explanations for this discrepancy. First, estimates of NEE as measured by the eddy-covariance technique are laden with uncertainty and can potentially provide a poor baseline for models to be tested against. Second, there could be fundamental problems in model structure that prevent an accurate simulation of NEE. Third, ecosystem process models are dependent on ecophysiological parameter sets derived from field measurements in which a single parameter for a given species can vary considerably. The latter problem suggests that with such broad variation among multiple inputs, any ecosystem modeling scheme must account for the possibility that many combinations of apparently feasible parameter values might not allow the model to emulate the observed NEE dynamics of a terrestrial ecosystem, as well as the possibility that there may be many parameter sets within a particular model structure that can successfully reproduce the observed data. We examined the extent to which these three issues influence estimates of NEE in a widely used ecosystem process model, Biome-BGC, by adapting the generalized likelihood uncertainty estimation (GLUE) methodology. This procedure involved 400,000 model runs, each with randomly generated parameter values from a uniform distribution based on published parameter ranges, resulting in estimates of NEE that were compared to daily NEE data from young and mature Ponderosa pine stands at Metolius, Oregon. Of the 400,000 simulations run with different parameter sets for each age class (800,000 total), over 99% of the simulations underestimated the magnitude of net ecosystem CO₂ exchange, with only 4.07% and 0.045% of all simulations providing satisfactory simulations of the field data for the young and mature stands, even when uncertainties in eddy-covariance measurements are accounted for. Results indicate fundamental shortcomings in the ability of this model to produce realistic carbon flux data over the course of forest development, and we suspect that much of the mismatch derives from an inability to realistically model ecosystem respiration. However, difficulties in estimating historic climate data are also a cause for model-data mismatch, particularly in a highly ecotonal region such as central Oregon. This latter difficulty may be less prevalent in other ecosystems, but it nonetheless highlights a challenge in trying to develop a dynamic representation of the terrestrial biosphere.     

Correlation analysis between sulphate content and leaching of sulphates in recycled aggregates from construction and demolition wastes

In some recycled aggregates applications, such as component of new concrete or roads, the total content of soluble sulphates should be measured and controlled. Restrictions are usually motivated by the resistance or stability of the new structure, and in most cases, structural concerns can be remedied by the use of techniques such as sulphur-resistant cements. However, environmental risk assessment from recycling and reuse construction products is often forgotten. The purpose of this study is to analyse the content of soluble sulphate on eleven recycled aggregates and six samples prepared in laboratory by the addition of different gypsum percentages. As points of reference, two natural aggregates were tested. An analysis of the content of the leachable amount of heavy metals regulated by European regulation was included. As a result, the correlation between solubility and leachability data allow suggest a limiting gypsum amount of 4.4% on recycled aggregates. This limit satisfies EU Landfill Directive criteria, which is currently used as reference by public Spanish Government for recycled aggregates in construction works.     

Seasonal evolution of beach waste and litter during the bathing season on the Catalan coast

Beach waste and litter composition and evolution on popular urban (located in the main nucleus of the municipality) and urbanized (located in residential areas outside the main nucleus) beaches of the Costa Brava (Catalan coast) were assessed during the bathing season. Waste and litter production (amount and composition) were affected by urbanization and varied during the summer. Urban beaches had higher densities of waste deposition and lower percentages of organic, domestic and other miscellaneous waste than urbanized beaches. Litter characteristics were also influenced by type of beach, and varied during the season as a consequence of beach use and cleaning practices, but not environmental factors. Urbanized beaches obtained higher scores for aesthetic quality of sand than urban beaches, and small-sized litter tended to accumulate during the season in the beach of Lloret Centre. The most important problems are management of recyclable materials, litter left by users on the sand, and separation of sand from litter. In addition, current efficiency of mechanical cleaning is low, especially in the withdrawal of cigarette butts. These analyses highlight problems that should be addressed in future management of area beaches.     

Physical and chemical changes during composting of wood chip-bedded and straw-bedded beef cattle feedlot manure

In the 1990s, restrictions on incineration encouraged the forest industry in western Canada to develop new uses for their wood residuals by product. One such use was as a replacement for cereal straw bedding in southern Alberta's beef cattle (Bos taurus) feedlot industry. However, use of carbon (C)-rich bedding, such as wood chips, had implications for subsequent composting of the feedlot manure, a practice that was being increasingly adopted. In a 3-yr study, we compared composting of wood chip-bedded manure (WBM) and barley (Hordeum vulgare L.) straw-bedded manure (SBM). There were no significant differences in temperature regimes of SBM and WBM, indicating similar rates of successful composting. Of 17 physical and chemical parameters, five showed significant (P < 0.10) differences due to bedding at the outset of composting (Day 0), and 11 showed significant differences at final sampling (Day 124). During composting (10 sampling times), seven parameters showed significant bedding effects, 16 showed significant time effects, and four showed a Bedding x Time interaction. Significantly lower (P < 0.10) losses of nitrogen (N) occurred with WBM (19%) compared with SBM (34%), which has positive implications for air quality and use as a soil amendment. Other advantages of WBM compost included significantly higher total C (333 vs. 210 kg Mg(-1) for SBM) and inorganic N (1.3 vs. 1.0 kg Mg(-1) for SBM) and significantly lower total phosphorus (4.5 vs. 5.3 kg Mg(-1) for SBM). Our results showed that wood chip bedding should not be a problem for subsequent composting of the manure after pen cleaning. In combination with other benefits, our findings should encourage the adoption of wood chips over straw as a bedding choice for southern Alberta feedlots.     

Microbial transformation and degradation of polychlorinated biphenyls

This paper reviews the potential of microorganisms to transform polychlorinated biphenyls (PCBs). In anaerobic environments, higher chlorinated biphenyls can undergo reductive dehalogenation. Meta- and para-chlorines in PCB congeners are more susceptible to dechlorination than ortho-chlorines. Anaerobes catalyzing PCB dechlorination have not been isolated in pure culture but there is strong evidence from enrichment cultures that some Dehalococcoides spp. and other microorganisms within the Chloroflexi phylum can grow by linking the oxidation of H(2) to the reductive dechlorination of PCBs. Lower chlorinated biphenyls can be co-metabolized aerobically. Some aerobes can also grow by utilizing PCB congeners containing only one or two chlorines as sole carbon/energy source. An example is the growth of Burkholderia cepacia by transformation of 4-chlorobiphenyl to chlorobenzoates. The latter compounds are susceptible to aerobic mineralization. Higher chlorinated biphenyls therefore are potentially fully biodegradable in a sequence of reductive dechlorination followed by aerobic mineralization of the lower chlorinated products.