Microbial metagenomics in the Baltic Sea: Recent advancements and prospects for environmental monitoring

Metagenomics refers to the analysis of DNA from a whole community. Metagenomic sequencing of environmental DNA has greatly improved our knowledge of the identity and function of microorganisms in aquatic, terrestrial, and human biomes. Although open oceans have been the primary focus of studies on aquatic microbes, coastal and brackish ecosystems are now being surveyed. Here, we review so far published studies on microbes in the Baltic Sea, one of the world’s largest brackish water bodies, using high throughput sequencing of environmental DNA and RNA. Collectively the data illustrate that Baltic Sea microbes are unique and highly diverse, and well adapted to this brackish-water ecosystem, findings that represent a novel base-line knowledge necessary for monitoring purposes and a sustainable management. More specifically, the data relate to environmental drivers for microbial community composition and function, assessments of the microbial biodiversity, adaptations and role of microbes in the nitrogen cycle, and microbial genome assembly from metagenomic sequences. With these discoveries as background, prospects of using metagenomics for Baltic Sea environmental monitoring are discussed.     

Ecological Biodiversity of Marine Nematodes in Samples from Temperate, Tropical, and Deep-Sea Regions

Little is known about the biodiversity of free-living nematodes. We have attempted to provide baseline information about the natural diversities (those not influenced by pollution) that might be expected in six biotopes. Seventeen marine nematode data sets consisting of 197 samples were standardized to allow a comparison of alpha diversity, or sample diversity, from temperate estuarine, tropical sublittoral, temperate sublittoral, bathyal, abyssal, and hadal biotopes, which were selected on criteria of depth and latitude. The diversity analysis methods we employed were rarefaction curves; three weighted diversity indices of species richness, SR, H', and ES(X); and two equitability indices, J' and V. Diversity was significantly different in the six biotopes. The weighted indices of species richness were more capable of resolving differences between the biotopes than were the equitability indices, whose large standard errors suggested that they were more influenced by local, small-scale ecological factors. This suggests that species richness is a better measure than equitability for large-scale comparisons of biotopes or regions. The ES(X), which is robust to sample size variations, was more efficient than the weighted indices of species richness, which were easily influenced by sample size. There was a nonlinear relationship between depth and diversity with the bathyal and abyssal biotopes displaying the highest diversity. The tropical sublittoral biotope was not more diverse than the temperate sublittoral biotope. The lowest diversities were found in the physically challenging temperate estuarine and hadal biotopes.     

Potential Effects of a Forest Management Plan on Bachman's Sparrows (Aimophila aestivalis): Linking a Spatially Explicit Model with GIS

By combining a spatially explicit, individual-based population simulation model with a geographic information system, we have simulated the potential effects of a U.S. Forest Service management plan on the population dynamics of Bachman's Sparrow ( Aimophila aestivalis ) at the Savannah River Site, a U.S. Department of Energy facility in South Carolina. Although the Forest Service's management plan explicitly sets management goals for many species, most of the prescribed management strategy deals with the endangered Red-cockaded Woodpecker ( Picoides borealis ) because of legal requirements. We explored how a species (the sparrow) that is not the target of specific management strategies but that shares some habitat requirements with the woodpecker, would fare under the management plan. We found that the major components of the proposed management plan may allow the sparrow population to reach and exceed the minimum management goal set for this species, but only after a substantial initial decline in sparrow numbers and a prolonged transition period. In the model, the sparrow population dynamics were most sensitive to demographic variables such as adult and juvenile survivorship and to landscape variables such as the suitability of young clearcuts and mature pine stands. Using various assumptions about habitat suitability, we estimated that the 50-year probability of population extinction is at least 5% or may be much higher if juvenile survivorship is low. We believe, however, that modest changes in the management plan might greatly increase the sparrow population and presumably decrease the probability of extinction. Our results suggest that management plans focusing on one or a few endangered species may potentially threaten other species of management concern. Spatially explicit population models are a useful tool in designing modifications of management plans that can reduce the impact on nontarget species of management concern.     

Experimental evidence for effective and altruistic colony defence against natural predators by soldiers of the gall-forming aphid Pemphigus spyrothecae (Hemiptera : Pemphigidae)

Summary The thick-legged first instar soldiers of the gall-forming aphid Pemphigus spyrothecae Pass. are able to protect the aphids in the gall from being eaten by a range of insect predators. In artificial galls, the soldier aphids were able to kill first instar ladybirds Adalia bipunctata (L.) (Coleoptera: Coccinellidae), early third instar hoverfly larvae Eupeodes (Metasyrphus) corollae (Fab.) (Diptera: Syrphidae), and first-third instar Anthocoris nemoralis (Fab.) (Hemiptera: Cimicidae). Almost all the aphids that attacked the predators were themselves killed. The soldiers were also able to kill predators introduced into natural galls. Experiments were devised in which individuals of Anthocoris minki, which is the most important insect predator of the gall generations of Pemphigus at the study site, were free to enter and leave the gall: the soldiers were effective both in preventing the predator's access to the gall and in killing those predators that did manage to get in. In galls with experimentally manipulated numbers of soldiers and non-soldiers, it was clearly shown that it is the soldiers alone that kill the predators (Anthocoris minki and 1st instar Adalia bipunctata) (see Table 3). Even though many soldiers may die during these encounters, the selective advantage of killing the predators is high, since observations show that individual A. minki can pass through more than one instar inside a gall and kill all the aphids therein. The aphids were not observed to attack conspecific aphids from other galls or the cohabiting aphid Chaitophorus leucomelas Koch. The primary role of the soldier caste is therefore the defence of the aphid colony against predators.     

Effects of Clear-Cut Harvesting on Boreal Ground-Beetle Assemblages (Coleoptera: Carabidae) in Western Canada

We compared pitfall catches from four types of mature lodgepole pine—white spruce forest with those from five age classes of young forest regenerating subsequent to clear-cutting. Ground beetles were most abundant in the youngest sites (1–2 years since cutting) and in the mature stands on moist soil. Species richness was higher in regenerating sites than in mature forest. Cluster analysis grouped the ground-beetle fauna according to forest age and forest type, suggesting that there is a general pattern of recovery after logging. Responses of common species to forest cutting fell into three groups: (1) forest generalists (2 species) were not dramatically affected, (2) species of open habitat (27 species) appeared and/or increased in abundance, and (3) mature forest species (10 species) disappeared or decreased in abundance. Populations of many mature forest species appear to recover following logging, but several specialists did not recolonize even the oldest regenerating stands. Furthermore, fragmentation and creation of large areas of relatively homogeneous young forest stages through logging may have detrimental long-term effects even on the more abundant forest generalists. We must better understand subtle variations in habitat in order to maintain invertebrate diversity while harvesting the boreal forest.     

The evolution of non-maternal caretaking among anthropoid primates: do helpers help?

Non-maternal infant care among nonhuman primates has frequently been investigated from the perspective of the caretaker. Here we examine whether allocaretaking behavior provides direct reproductive benefits to mothers. Comparative analyses that control for the effects of allometry and phylogeny reveal that allocaretaking behavior correlates with relatively fast infant growth and reproduction, but is not associated with the production of large infants. These results are consistent with those from studies of other taxa; primate helpers appear to increase the reproductive success of female breeders. In addition, our findings contrast with those derived from traditional allometric analyses and underscore the importance of controlling for the potentially confounding effects of phylogeny in comparative analyses. Received: 28 May 1996 / Accepted after revision: 16 November 1996     

Diversionary displays of paternal stickleback

Summary In Crystal Lake, British Columbia, male threespine stickleback (Gasterosteus aculeatus) perform a diversionary display that deters cannibalistic conspecifics from entering their territories and destroying their nests or consuming offspring. In this population, the display consists of males swimming directly out of their territories and rooting aggressively in the substratum, mimicking stickleback feeding on nests of others, or digging for nesting materials. The display is elicited solely by conspecifics, and usually by benthic foraging groups of 2–300 individuals. It usually is elicited when groups are approaching the territory directly. Otherwise the male typically joins the group or remains still in his territory until the group leaves. This observation suggests that males are capable of discriminating conditions under which the display is most likely to be successful. The display is absent in a population in Garden Bay Lake, British Columbia, in which benthic foraging groups are absent. In Crystal Lake the males themselves do not risk predation by the groups, and the tendency of males to perform the display does not change with reproductive condition. Comparison with diversionary displays performed in two additional allopatric populations suggests that diversionary displays in this species incorporate elements of other behavioral sequences displaced to the display, and that variation in the structure of the display exists among populations.