Comparison of a two-stage sampling design and its composite sample alternative: An application to soil studies

The objective of a long-term soil survey is to determine the mean concentrations of several chemical parameters for the pre-defined soil layers and to compare them with the corresponding values in the past. A two-stage random sampling procedure is used to achieve this goal. In the first step, n subplots are selected from N subplots by simple random sampling without replacement; in the second step, m sampling sites are chosen within each of the n selected subplots. Thus n · m soil samples are collected for each soil layer. The idea of the composite sample design comes from the challenge of reducing very expensive laboratory analyses: m laboratory samples from one subplot and one soil layer are physically mixed to form a composite sample. From each of the n selected subplots, one composite sample per soil layer is analyzed in the laboratory, thus n per soil layer in total. In this paper we show that the cost is reduced by the factor m — 1 when instead of the two-stage sampling its composite sample alternative is used; however, the variance of the composite sample mean is increased. In the case of positive intraclass correlation the increase is less than 12.5%; in the case of negative intraclass correlation the increase depends on the properties of the variable as well. For the univariate case we derive the optimal number of subplots and sampling sites. A case study is discussed at the end.     

Zn, Cd and Pb accumulation and arbuscular mycorrhizal colonisation of pennycress Thlaspi praecox Wulf. (Brassicaceae) from the vicinity of a lead mine and smelter in Slovenia

Significant hyperaccumulation of Zn, Cd and Pb in field samples of Thlaspi praecox Wulf. collected from a heavy metal polluted area in Slovenia was found, with maximal shoot concentrations of 14,590 mg kg(-1) Zn, 5960 mg kg(-1) Cd and 3500 mg kg(-1) Pb. Shoot/root ratios of 9.6 for Zn and 5.6 for Cd show that the metals were preferentially transported to the shoots. Shoot bioaccumulation factors exceeded total soil Cd levels 75-fold and total soil Zn levels 20-fold, further supporting the hyperaccumulation of Cd and Zn. Eighty percent of Pb was retained in roots, thus indicating exclusion as a tolerance strategy for Pb. Low level colonisation with arbuscular mycorrhizal fungi (AMF) of a Paris type was observed at the polluted site, whereas at the non-polluted site Arum type colonisation was more common. To our knowledge this is the first report of Cd hyperaccumulation and AMF colonisation in metal hyperaccumulating T. praecox.     

Local governance of greenhouse gas emissions from air travel

Global greenhouse gas emissions from air travel (GHG-A) are on the rise, and projections point towards a rapid growth in the coming decades. This study aims to examine how local government (cities), addresses GHG-A in their Sustainable Energy Action Plans (SEAP). To fulfil this aim, over 200 SEAPs were analysed focusing on three issues: (1) Treatment of GHG-A in local emissions inventories; (2) Policy initiatives within this domain; and (3) The cities’ perceptions of the conflicts of interests. Results showed that more than half of the cities acknowledge the challenge of GHG-A, around one third include GHG-A in their emissions inventories, and more than one quarter have initiated policy interventions. To categorise these interventions, we have added a mode ‘governing by agenda setting’ to an existing analytical framework, ‘Modes of governing’. With their authority limited to the local setting, this mode of governing is a common channel for cities to push changes at higher levels.     

Virus Genome Quantification Does not Predict Norovirus Infectivity After Application of Food Inactivation Processing Technologies

When determining the effect of food processing on the infectivity of any contaminating virus, it is necessary to distinguish unambiguously between infectious and non-infectious viruses present. However, this can be difficult in the particular case of noroviruses (NoVs) because no reliable cell culture model is available. The aim of this study was to assess the use of molecular methods—RT real-time PCR (RT-qPCR) and enzymatic treatment (ET) coupled to RT-qPCR—to quantify the infectivity of NoV after application of various inactivating food-processing technologies. RT-qPCR and ET-RT-qPCR gave significantly different (P < 0.01) results concerning the reduction in viral genome counts by all inactivation procedures and conditions used, except for HHP treatment at 600 MPa for 5 min. These findings indicate that the ET prior to RT-qPCR has an effect on the estimation of the reduction of virus genome counts, and may eliminate genomes of affected virus particles. However, no correlation was found between the results obtained by ET-RT-qPCR and those obtained by cell culture. Therefore, the effect is presumably only partial, and not adequate to allow accurate estimation of virus inactivation. Consequently, our results indicate that the quantification of virus genomes by PCR, regardless of prior ET, is not adequate for establishing virus inactivation and/or infectivity. In addition, our results also illustrate that the general effect of virus inactivation is not directly correlated to effects on the integrity of virus genome and protein capsid. Presumably, inactivation by food processing is the consequence of effects on proteins involved in adhesion and invasion stages.     

Microbiological and mycotoxicological contamination in Slovenian primary grain production

This study was aimed at investigating the contamination of grains, which are grown and used for animal diets by Slovene farmers. A total of 107 samples were examined for mesofilic aerobic molds and yeasts. The leading contaminants among molds were from Fusarium spp., detected in 73 samples, mostly in maize (50). In accordance with the European Feed Microbiology Organisation criteria, 68% of all tested samples were of the quality level I, with normal microbiological flora, and 9% of samples were estimated as quality level IV and not suitable for animal feed. Using liquid and gas chromatography methods, the presence of various mycotoxins (expressed as 12% of moisture content) was found in 77% of all samples; mostly deoxynivalenol (71%) in concentration of 150–14,420 µg kg^?1, followed by zearalenone (32%, 20–640 µg kg^?1), fumonisin B1 (31%, 10–4863 µg kg^?1), fumonisin B2 (22%, 10–1629 µg kg^?1), while HT-2 and T-2 toxins were found in low concentration in two samples, and aflatoxin B1 and ochratoxin A in one sample. By statistical evaluation, significant positive correlations were noted between the presence of deoxynivalenol and zearalenone as well as between fumonisin B1 and B2.     

The environmental occurrence of hexabromocyclododecane in Sweden

The brominated flame retardant hexabromocyclododecane (HBCD) is extensively used in Europe, but data on the environmental concentrations of this chemical are scarce. A first screening has been performed concerning the environmental occurrence of HBCD in Sweden, a country where the chemical is not produced and the current industrial use is very limited. Possible emission sources were identified through a systematic analysis of the use in a life cycle perspective. In addition to a few point sources, diffuse emissions from polymeric products are possible. Measurements have been performed close to certain possible point sources, in the urban environment and in remote regions, and included air, deposition, water, soil, sediments, sludge, biota and foodstuffs. HBCD was detected in all media analysed and in all environments. The relatively high concentrations detected in herring and foodstuffs provide evidence for bioaccumulation of HBCD. The presence of HBCD in remote background air implies that HBCD has potential for long-range atmospheric transport. There are also some indications that diffuse emissions of HBCD occur in the urban environment.     

Quantifying the efficiency of soil sampling designs: A multivariate approach

The objective of this paper is to quantify and compare the loss functions of the standard two-stage design and its composite sample alternative in the context of multivariate soil sampling. The loss function is defined (conceptually) as the ratio of cost over information and measures design inefficiency. The efficiency of the design is the reciprocal of the loss function. The focus of this paper is twofold: (a) we define a measure of multivariate information using the Kullback–Leibler distance, and (b) we derive the variance-covariance structure for two soil sampling designs: a standard two-stage design and its composite sample counterpart. Randomness in the mass of soil samples is taken into account in both designs. A pilot study in Slovenia is used to demonstrate the calculations of the loss function and to compare the efficiency of the two designs. The results show that the composite sample design is more efficient than the two-stage design. The efficiency ratio is 1.3 for pH, 2.0 for C, 2.1 for N, and 2.5 for CEC. The multivariate efficiency ratio is 2.3. These ratios primarily reflect cost ratios; influence of the information is small.