Efficient species-level monitoring at the landscape scale

Monitoring the population trends of multiple animal species at a landscape scale is prohibitively expensive. However, advances in survey design, statistical methods, and the ability to estimate species presence on the basis of detection-nondetection data have greatly increased the feasibility of species-level monitoring. For example, recent advances in monitoring make use of detection-nondetection data that are relatively inexpensive to acquire, historical survey data, and new techniques in genetic evaluation. The ability to use indirect measures of presence for some species greatly increases monitoring efficiency and reduces survey costs. After adjusting for false absences, the proportion of sample units in a landscape where a species is detected (occupancy) is a logical state variable to monitor. Occupancy monitoring can be based on real-time observation of a species at a survey site or on evidence that the species was at the survey location sometime in the recent past. Temporal and spatial patterns in occupancy data are related to changes in animal abundance and provide insights into the probability of a species' persistence. However, even with the efficiencies gained when occupancy is the monitored state variable, the task of species-level monitoring remains daunting due to the large number of species. We propose that a small number of species be monitored on the basis of specific management objectives, their functional role in an ecosystem, their sensitivity to environmental changes likely to occur in the area, or their conservation importance.     

The cockle <Emphasis Type="Italic">Cerastoderma edule</Emphasis> at Northeast Atlantic shores: genetic signatures of glacial refugia

The cockle Cerastoderma (Cardium) edule (L.) ranges from NW Africa to northern Scandinavia. Abundance in shallow coastal sediment is often high, and it attracts commercial harvest. In this study, a complex genetic pattern has been revealed by mitochondrial DNA in 383 individuals from 19 sampling sites. Parsimony network analysis of 79 haplotypes identified two dominant central haplotypes separated by low divergence. One is characteristic for a homogenous southwestern group of populations from Africa to the British Isles. The other is characteristic for a heterogeneous northern group with a deviant Arctic population. At the entrance of the Baltic Sea, a mixture zone of the dominant haplotypes was found. The estimated population expansion time for the northern haplotype group predates that of the southwestern one, suggesting northern glacial refugia and a subsequent southern expansion of C. edule populations.     

Characterization of H+ and Cd2+ binding properties of the bacterial exopolysaccharides

The proton and Cd binding capacities of microbially produced exopolysaccharides, EPS, were quantified by the determination of stability constants and the concentration of complexing sites using H(+) or Cd(2+) selective electrodes in dynamic titrations. The influence of ionic strength, pH and the Cd to EPS ratio was evaluated over large concentration ranges. The applicability of the non-ideal competitive adsorption isotherm combined with a Donnan electrostatics approach was tested with respect to the EPS. Proton and cadmium binding data were compared with literature data examining other ubiquitous environmental ligands including humic substances, alginate, bacteria, etc. Subsequent modelling of Cd speciation in aquatic (fresh and marine waters) and soil systems suggested that the exopolysaccharides would play non-negligible role, under most conditions. The quantitative information provided in this paper thus represents an important advance in our understanding of Cd transport, bioavailability and impact in aquatic and terrestrial systems.     

Organohalogen chemicals in human blood from the United Kingdom

Blood serum from 154 volunteers at 13 UK locations in 2003 were analysed for a range of PCBs, organochlorine pesticides and PBDEs. HCB, p,p'-DDE and p,p'-DDT and beta-HCH were the dominant organochlorine pesticides in most samples. BDEs 47, 99, 100, 153, 154 and 183 were the most regularly detected PBDEs. This study is the first report of BDE209 in UK human blood (found in 11 samples, range < 15-240 ng/g lipid). Concentration and age correlated for the less easily metabolised PCBs, p,p'-DDT and p,p'-DDE, HCB and HCHs. With increasing age females tended to have lower concentrations of the more chlorinated PCBs than males. Similar PBDE concentrations, and distributions, to those reported in the general population in Sweden in 2002 were found, despite differences in historical PBDE production and usage. There is increasing regulation to control persistent and bioaccumulative chemicals, and establishing human exposure will help to identify substances which should be urgently phased out.     

Effect of tetracycline residues in pig manure slurry on tetracycline-resistant bacteria and resistance gene tet(M) in soil microcosms

Effects of tetracycline residues from pig manure slurry on the prevalence of tetracycline-resistant bacteria and the tetracycline resistance gene, tet(M), were studied in soil microcosms. Four types of soil microcosms were established for a period of 152 days, supplemented with combinations of pig manure slurry and a tetracycline-resistant Enterococcus faecalis, CG110, containing the tetracycline resistance gene tet(M) (on the conjugative transposon, Tn916). The prevalence of both tetracycline-resistant aerobic bacteria and tetracycline-resistant enterococci declined rapidly until day 45 where no significant differences in the levels of tetracycline-resistant bacteria in any of the four types of microcosms could be detected. tet(M) could be detected in microcosms supplemented with either pig manure slurry and/or E. faecalis CG110 (tet(M)) for the whole period (152 days). tet(M) could be detected longer than tetracycline-resistant enterococci could be isolated (limit of detection 100 CFU/g soil) probably due to viable but not culturable (VBNC) bacteria with tet(M), horizontal gene transfer of tet(M) to indigenous soil bacteria or presence of "free" DNA. The concentration of chlortetracycline and oxytetracycline were almost stable through out the experimental period, but the tetracycline concentrations had no effect on prevalence of tetracycline-resistant bacteria. The presented microcosm approach simulated natural farmland conditions well and supported results from previous field studies.     

Coccolithophorids,Nutrients and the Greenhouse Effect

Despite the fact that coccolithophorids such as Emiliania huxleyi are suspected to play an important role in carbon-cycling, there are few data from which to deduce how these organisms may respond to CO₂-induced global warming. the nitrogen and phosphorus nutrient physiology of these organisms, together with its interaction with photosynthesis, needs to be studied especially in connection with the selection for coccolith forming individuals and the quantity and quality of the CaCO₃ deposited in the coccoliths. Without such data, it will not be possible to model the contributions that these microalgae may play in arresting the increase in levels of atmospheric CO₂.     

A Marine Pollution Study of Northeast Coastal Water Off Taiwan Island

Abstract

The coastal water of northeast Taiwan island, called ‘Yin-Yang Hai’ for its distinct yellow colour compared with blue offshore water, was investigated from 1989 to 1990 by the authors. Biological study showed the dominant species of plankton to be Copepoda, Cladocera, planktonic eggs and Diatoma. Dominant species of benthos were young crabs, Amphipoda and Annelida, with Amphipoda usually occurring in heavily polluted areas. Heavy metal data showed that the concentration of copper was high. the copper and iron concentration in algae of the intertidal zone was also high. the concentrations of iron and copper in inshore water were also higher than in offshore water. By comparison of the pH and salinity distribution of this area, we conclude that this coastal water has been polluted by acid waste water from coastal industry. the suspended solids concentration in sea water is high. Flocculation occurring at the boundary of fresh and saline water might be a reason for the distinct yellow colour of the water of this area. Further study is required.     

Sedimentary Pigments and Organic Matter in Relation to Benthic Fauna in the Tan-Shui Estuary,Taiwan

The benthic ecological structure of the Tan-Shui estuary, Taiwan is changed due to long term effects of dumping of urban wastewater and of engineering actions. to monitor these changes, we sampled and analyzed benthos and sediment from 12 stations on the estuary.

The composition of the dominant species of benthos varied seasonally, with molluscan and crustacean species having greater numbers and higher frequencies of occurrence than other species. the dominant taxa during winter were Nassarius sp. and Maldanidae at two stations. Analysis using Simpson's index and Shannon's index showed the benthic community varied more in coastal areas than in offshore areas.

Physicochemical analysis showed that most of the Tan-Shui estuary consisted of sandy sediment. the variations in concentrations of organic carbon and total nitrogen at each station were small. Although the concentrations of chlorophyll-a and carotenoid at all stations were generally low, the two stations had the highest concentrations, and we concluded that the concentration of pigments in these sediments was related to the abundance of benthos. the community structure of the benthos reflected the characteristics of the sediments, and benthic species exhibited selection of and adaptation to specific sedimentary environments.     

Trace element uptake in plants grown on fly ash amended soils

Four crop plants were grown in a greenhouse in soils amended with 0, 5, 10, and 20% by weight of coal combustion fly ash to evaluate potential trace element uptake by the vegetation. The leaves and stems from each plant were harvested and analyzed for As, Cd, Co, Cu, Mn, Mo, Pb, Se, Tl, and Zn content during early, middle, and late growth. The trace element data were statistically analyzed using Analysis of Variance (ANOVA) to determine whether the trace element uptake in the four crop plants differed significantly between the soil treatments, and to identify significant differences in trace element uptake through time. The results show that the amount of amended fly ash does not significantly influence the concentration of most trace elements in plant tissue, and that some concentrations actually decrease with time. Although this study did not find a significant increase in trace element uptake, care must be taken in a natural environment where plants may behave differently.