In Situ Dynamics of F-Specific RNA Bacteriophages in a Small River: New Way to Assess Viral Propagation in Water Quality Studies

The occurrence and propagation of enteric viruses in rivers constitute a major public health issue. However, little information is available on the in situ transport and spread of viruses in surface water. In this study, an original in situ experimental approach using the residence time of the river water mass was developed to accurately follow the propagation of F-specific RNA bacteriophages (FRNAPHs) along a 3-km studied river. Surface water and sediment of 9 sampling campaigns were collected and analyzed using both infectivity and RT-qPCR assays. In parallel, some physico-chemical variables such as flow rate, water temperature, conductivity and total suspended solids were measured to investigate the impact of environmental conditions on phage propagation. For campaigns with low flow rate and high temperature, the results highlight a decrease of infectious phage concentration along the river, which was successfully modelled according to a first-order negative exponential decay. The monitoring of infectious FRNAPHs belonging mainly to the genogroup II was confirmed with direct phage genotyping and total phage particle quantification. Reported k decay coefficients according to exponential models allowed for the determination of the actual in situ distance and time necessary for removing 90 % of infectious phage particles. This present work provides a new way to assess the true in situ viral propagation along a small river. These findings can be highly useful in water quality and risk assessment studies to determine the viral contamination spread from a point contamination source to the nearest recreational areas.     

Application of a cave inventory system to stimulate development of management strategies: the case of west-central Florida, USA

The active management of air-filled cave systems is virtually non-existent within the karst landscape of west-central Florida. As in every karst landscape, caves are important because they contain a wide variety of resources (e.g., biota, speleothems) and can act as direct connections between surface and subsurface hydrological processes, potentially exacerbating the pollution of groundwater. Before sound management policies can be drafted, implemented, and enforced, stakeholders must first have knowledge of the management requirements of each cave. However, there is an informational disconnect between researchers, stakeholders, and the recreational caving community. Here, we present a cave inventory system that simplifies the dissemination of resource knowledge to stakeholders so that cave management and protection policies can be drafted and implemented at the state and local level. We inventoried 36 caves in west-central Florida, located on both public and private land, and analyzed cave resource data to provide insights on cave sensitivity and disturbance using two standardized indices. The data revealed that both public and private caves exhibit a wide range of sensitivity and disturbance, and before management strategies can be drafted, the ownership of each cave must be considered. Our inventory geodatabase serves as a link between researchers, landowners, and the public. To ensure the conservation and protection of caves, support from county or state government, combined with cave inventory data, is crucial in developing sound management policy.     

Avian predators are less abundant during periodical cicada emergences, but why?

Despite a substantial resource pulse, numerous avian insectivores known to depredate periodical cicadas (Magicicada spp.) are detected less commonly during emergence years than in either the previous or following years. We used data on periodical cicada calls collected by volunteers conducting North American Breeding Bird Surveys within the range of cicada Brood X to test three hypotheses for this observation: lower detection rates could be caused by bird calls being obscured by cicada calls ("detectability" hypothesis), by birds avoiding areas with cicadas ("repel" hypothesis), or because bird abundances are generally lower during emergence years for some reason unrelated to the current emergence event ("true decline" hypothesis). We tested these hypotheses by comparing bird detections at stations coincident with calling cicadas vs. those without calling cicadas in the year prior to and during cicada emergences. At four distinct levels (stop, route, range, and season), parallel declines of birds in groups exposed and not exposed to cicada calls supported the true decline hypothesis. We discuss several potential mechanisms for this pattern, including the possibility that it is a consequence of the ecological and evolutionary interactions between predators of this extraordinary group of insects.     

More than friends? Behavioural and genetic aspects of heterosexual associations in wild chacma baboons

In mammals, fathers are facultative caretakers, and male care is expected to evolve only if it is directed towards related young. Yet, in several promiscuous primate societies, males seem to care for infants despite a presumably low paternity confidence. In cercopithecines, cohesive associations (‘friendships’) between a lactating female and an adult male are frequent and provide the female and her infant with protection against various sources of aggression, including infanticide. However, the benefits gained by males through such relationships remain unclear, in part, because the relatedness between males and their protected infants has rarely been examined. Moreover, little is known about the nature of the cues underlying kin discrimination by males in societies where females mate polyandrously. In this study, we combine behavioural and genetic data from wild chacma baboons (Papio ursinus) in Namibia to investigate (1) whether males are related to their friend’s infant and (2) whether similarity between the major histocompatibility complex (MHC) genotype of males and infants (potentially perceived through odour phenotype) favours the establishment of friendships. We first show that males share close genetic ties with their friend’s infants, most often by having sired the infant. Secondly, we find that male–infant MHC (Class II–DRB) similarity, in contrast to paternity, does not predict male–infant associations. Overall, our results clarify the nature of the evolutionary benefits gained by males in these heterosexual associations, which can be considered as true paternal care. However, the proximate mechanisms underlying paternity recognition remain to be identified.     

Spatio-temporal patterns in the diversity of demersal fish communities off the south coast of South Africa

The diversity of ecological communities has been the focus of many studies. Because biodiversity provides several indicators used in an Ecosystem Approach to Fisheries (EAF) to track changes in fish communities, we investigated the spatial and temporal patterns in the diversity of some demersal fish communities subjected to varying fishing pressure. Depth and catch rate were the most important predictors in explaining changes in diversity followed by longitude and survey year. Diversity, as measured by the various indices except for taxonomic distinctness (∆*), initially declined with increasing depth to about a depth of 80 m, then increased to about 150 m after which it declined. Taxonomic distinctness index (∆*) showed an increase in the taxonomic heterogeneity of the demersal community below the 300-m isobath. Diversity remained relatively constant with increase in longitude to around 24°E (which has the lowest diversity) after which it increased. The assessment of the temporal trend in diversity indicates that survey year has a significant effect on all diversity indices except for ∆*. Diversity increased and dominance declined with time. This may be result of a decline in the abundance of dominant species or an increase in the abundance less dominant species, or a combination of both effects. Multivariate analysis of the set of diversity indices showed three groups of indices: those reflecting species richness (S, Margalef’s d), those measuring mainly taxonomic relatedness (∆*), and those balancing the richness and evenness components of diversity (J′, H′, λ, ∆, Hill’s N1, and Hill’s N2). The relationship between evenness, catch rate, and size was also investigated. Size classes with highest evenness were found to have lowest catch rate and vice versa. This highlights the need to consider the size and trophic level of species when linking diversity to the functioning of ecosystems.     

Feedbacks between conservation and social-ecological systems

Robust ways to meet objectives of environmental conservation and social and economic development remain elusive. This struggle may in part be related to insufficient understanding of the feedbacks between conservation initiatives and social-ecological systems, specifically, the ways in which conservation initiatives result in social changes that have secondary effects on the environments targeted by conservation. To explore this idea, we sampled peer-reviewed articles addressing the social and environmental dimensions of conservation and coded each paper according to its research focus and characterization of these feedbacks. The majority of articles in our sample focused either on the effect of conservation initiatives on people (e.g., relocation, employment) or the effect of people on the environment (e.g., fragmentation, conservation efficacy of traditional management systems). Few studies in our sample empirically addressed both the social dynamics resulting from conservation initiatives and subsequent environmental effects. In many cases, one was measured and the other was discussed anecdotally. Among the studies that describe feedbacks between social and environmental variables, there was more evidence of positive (amplifying) feedbacks between social and environmental outcomes (i.e., undesirable social outcomes yielded undesirable environmental effects and desirable social outcomes yielded desirable environmental effects). The major themes within the sampled literature include conflict between humans and wild animals, social movements, adaptive comanagement, loss of traditional management systems, traditional ecological knowledge, human displacement and risks to livelihoods, and conservation and development. The narratives associated with each theme can serve as hypotheses for facilitating further discussion about conservation issues and for catalyzing future studies of the feedbacks between conservation and social-ecological systems.     

Our disappearing past: a GIS analysis of the vulnerability of coastal archaeological resources in California’s Santa Barbara Channel region

Coastal archaeological resources around the world often coincide with dense contemporary human populations and a rapidly changing physical environment. Projected sea level rise and urban expansion during the 21^st century threaten to destroy much of our global coastal archaeological heritage. In this study, we adapt an environmental vulnerability analysis to quantify the threats of modern development and sea level rise on archaeological sites in California’s Santa Barbara Channel region. Using spatial and statistical techniques, we create a Cultural Resource Vulnerability Index that combines environmental factors, current and projected urban footprints, and archaeological site positioning. We illustrate the importance of this method for targeting threatened archaeological sites for mitigation and salvage research. In the process, we highlight the significance of coastal archaeological sites for helping better understand contemporary environmental and cultural issues, underscoring the need to preserve or salvage these sites for their significant research value.     

A building education programme in North Yemen

In December 1982 the central highlands of the Yemen Arab Republic suffered an earthquake that caused extensive damage to traditional buildings in the area. In the aftermath of the relief effort for victims of the disaster, a project was set up to provide local builders with simple information about the means of strengthening homes. This education programme has now been running for almost three years. This report describes the activities of the project, and assesses some of the issues that emerge from this kind of education work, and the methods that have been used.