Mechanistic Virtual Modeling: Coupling a Plant Simulation Model with a Three-dimensional Plant Architecture Component

The aim of this research is to integrate plant architectural modeling or “visualization modeling” and “mechanistic” or physiologically based modeling to describe how a real plant functions using a virtual crop. Virtual crops are life-like computer representations of crops based on individual plants and including the representation of the substrate on which the plants grow. The integration of a three-dimensional expression and the mechanistic model of plant development and growth requires the knowledge of the position of the organs along the different plant axes (the topology), their sizes, their forms, and their spatial orientation. The plant simulation model simulates the topology and organ weight or length. The superposition of spatial position and the topology produces the architecture of the plant. The association between sizes and organs creates what we refer to as the plant morphological model. Both components, the architectural model and the morphology model, are detailed in this paper. Once the integration is complete, the system produces a movie-like animation that shows the plant growing. The integrated model may simulate one or several plants growing simultaneously (in parallel). Visual capabilities make the proposed system very unique as it allows users to judge the results of the simulation the same way a farmer judges the situation of the crops in real life, by visually observing the field.     

Stable isotope fractionation to investigate natural transformation mechanisms of organic contaminants: principles, prospects and limitations

Gas chromatography-isotope ratio mass spectrometry (GC-IRMS) has made it possible to analyze natural stable isotope ratios (e.g., (13)C/(12)C, (15)N/(14)N, (2)H/(1)H) of individual organic contaminants in environmental samples. They may be used as fingerprints to infer contamination sources, and may demonstrate, and even quantify, the occurrence of natural contaminant transformation by the enrichment of heavy isotopes that arises from degradation-induced isotope fractionation. This review highlights an additional powerful feature of stable isotope fractionation: the study of environmental transformation mechanisms. Isotope effects reflect the energy difference of isotopologues (i.e., molecules carrying a light versus a heavy isotope in a particular molecular position) when moving from reactant to transition state. Measuring isotope fractionation, therefore, essentially allows a glimpse at transition states! It is shown how such position-specific isotope effects are "diluted out" in the compound average measured by GC-IRMS, and how a careful evaluation in mechanistic scenarios and by dual isotope plots can recover the underlying mechanistic information. The mathematical framework for multistep isotope fractionation in environmental transformations is reviewed. Case studies demonstrate how isotope fractionation changes in the presence of mass transfer, enzymatic commitment to catalysis, multiple chemical reaction steps or limited bioavailability, and how this gives information about the individual process steps. Finally, it is discussed how isotope ratios of individual products evolve in sequential or parallel transformations, and what mechanistic insight they contain. A concluding session gives an outlook on current developments, future research directions and the potential for bridging the gap between laboratory and real world systems.     

Evaluation of confocal laser scanning microscopy for enumeration of virus-like particles in aquatic systems

Abundances of virus-like particles (VLPs, mostly bacteriophages) are high in aquatic environments; therefore, techniques for precise enumeration are essential in ecological monitoring. VLPs were determined after staining with SYBR Gold by conventional epifluorescence microscopy and compared to enumerations performed by confocal laser scanning microscopy (CLSM). In order to assess the potential of CLSM for viral direct counts (VDCs), we processed samples from different freshwater and marine systems. Optical sectioning by CLSM and production of an overlay picture of multiple scans enables the often uneven whole investigated filter area to be brought to the plane of focus. This allows for subsequent image analysis of digitally created high-quality images. Another advantage using the CLSM was that the short spot excitation of the stain via laser beam minimized fading of the stain. The VDC results show that there is no significant difference between the two methods. Regarding the known difficulties of viral abundance estimates on particulate material, CLSM was further applied to enumerate VLPs on a small set of marine transparent exopolymeric particles sampled from the Atlantic Ocean. Our data suggest that CLSM is a useful tool to count viruses in water samples as well as attached to certain types of aquatic aggregates.     

Occurrence and sorption properties of arsenicals in marine sediments

The content of total arsenic, the inorganic forms: arsenite (As(III)) and arsenate (As(V)), the methylated forms: monomethylarsonic acid and dimethylarsinic acid (DMA), trimethylarsenic oxide, tetramethylarsenonium ion and arsenobetaine was measured in 95 sediment samples and 11 pore water samples from the Baltic Sea near the island of Bornholm at depths of up to 100 m. As(III+V) and DMA were detected in the sediment and As(III+V) was detected in the sediment pore water. Average total As concentration of 10.6?±?7.4 mg/kg dry matter (DM) in the sediment corresponds to previously reported values in the Baltic Sea and other parts of the world. Existing data for on-site measurements of sorption coefficients (Kd) of arsenicals in marine and freshwater sediments show large variability from <1 to >1,000 L/kg. In this work, calculated sorption coefficients (Kd and Koc) for As(III+V) showed significant correlation with depth, dissolved oxygen (DO), salinity and sediment classification; for depths <70 m, salinity <11 %, DO >9 mg/L and sand/silt/clay sediments the Kd was 118?±?76 L/kg DM and for depths >70 m, salinity >11 %, DO?<?9 mg/L and muddy sediments the Kd was 513?±?233 L/kg DM. The authors recommend using the found Kd value for arsenic in marine sediments when conditions are similar to the Baltic Sea. At locations with significant anthropogenic point sources or where the local geology contains volcanic rock and sulphide mineral deposits, there may be significantly elevated arsenic concentrations, and it is recommended to determine on-site Kd values.     

The use of leeches and logit log-linear contingency models to assess and monitor aquatic PCB contamination originating from mid-Canada radar line site 050

Abandoned military sites in northern North America are relics of the Cold War and sources of polychlorinated biphenyls (PCBs). In the late 1990s, the Canadian federal and provincial governments began the cleanup of the mid-Canada radar line in Ontario, Canada. The first site to be remediated was Site 050 (Fort Albany First Nation) in 2001; however, the community remains concerned that contaminants may have moved prior to, during, and after remediation into the Albany River directly adjacent to Site 050. Thus, the Albany River was monitored (1999, 2001, 2002) during the remediation process to determine if the cleanup itself further contaminated the aquatic compartment, using leeches (Haemopis spp.) as bioindicators. Few organochlorines were found in leeches at levels higher than the detection limit, aside from PCBs. Leech data from the present study indicated that PCB levels were significantly higher near Site 050 than the control site upstream, indicating point source contamination from Site 050. The temporal trend in leech contaminant data indicated an increase in PCB contaminant load from 1999 (pre-remediation) to 2001 (immediately post-remediation), but this difference was not statistically significant due to high variances. Nevertheless, logit log-linear contingency modeling did reveal that immediately after cleanup (2001), contaminants (CBs 99, 118, 128, 156, 170, 183) in leeches were detected significantly more frequent than expected. When taken together, leech body burden and frequency of detection data suggest that the remediation process itself further contaminated the aquatic environment, if only temporarily. Lastly, the removal of the terrestrial source of PCBs during remediation did remove the source of aquatic contaminants in that body burden of contaminants in leeches were significantly lower a year after cleanup.     

Ecological quality boundary-setting procedures: the Gulf of Riga case study

Two approaches for setting ecological class boundaries, response curves and a simplified mathematical boundary-setting protocol, were tested for coastal, transitional and open waters in the Gulf of Riga, Baltic Sea. The simplified mathematical boundary-setting protocol defines acceptable ecological status based on expert judgment by a uniform relative deviation from reference conditions. In contrast, response curves derive class boundary definitions from observed changes in biological quality elements along environmental pressure gradients for class boundary definitions. Identification of relevant environmental pressures for the construction of response curves was based on a conceptual model of eutrophication in the Gulf of Riga. Response curves were successfully established for summer chlorophyll a and transparency, as well as for macrozoobenthos abundance in the Central Gulf, macrozoobenthos biotic coefficient in the Southern Gulf, and maximum depth of phytobenthos in the Northern Gulf. In the Gulf of Riga response curves almost always permitted a larger deviation from reference conditions than the 50% deviation applied for the simplified mathematical boundary-setting protocol. The case study clearly demonstrated that class boundary definitions should take into account the sensitivity of the target water body. Also, the class boundaries for different ecological quality elements were internally more consistent than those derived by the simplified mathematical boundary-setting protocol.     

Historical trends in the mass and chemical species concentrations of coarse particulate matter in the Los Angeles Basin and relation to sources and air quality regulations

To assess the impact of past, current and proposed air quality regulations on coarse particulate matter (CPM), the concentrations of CPM mass and its chemical constituents were examined in the Los Angeles Basin from 1986 to 2009 using PM data acquired from peer-reviewed journals and regulatory agency database. PM10 mass levels decreased by approximately half from 1988 to 2009 at the three sampling sites examined- located in downtown Los Angeles, Long Beach and Riverside. Annual CPM mass concentrations were calculated from the difference between daily PM10 and PM2.5 from 1999 to 2009. High CPM episodes driven by high wind speed/stagnant condition caused year-to-year fluctuations in the 99th/98th percentile CPM levels. The reductions of average CPM levels were lower than those of PM10 in the same period, therefore the decrease of PM10 level was mainly driven by reductions in the emission levels of PM2.5 (or fine) particles, as demonstrated by the higher annual reduction of average PM2.5 (0.92 microg/m3) compared with CPM (0.39 microg/m3) from 1999 to 2009 in downtown Los Angeles despite their comparable concentrations. This is further confirmed by the significant decrease of Ni, Cr, V and EC in the coarse fraction after 1995. On the other hand, the levels of several inorganic ions (sulfate, chloride and to a lesser extent nitrate) remained comparable. From 1995 to 2008, levels of Cu, a tracer of brake wear, either remained similar or decreased at a smaller rate compared with elements of combustion origins. This differential reduction of CPM components suggests that past and current regulations may have been more effective in reducing fugitive dust (Al, Fe and Si) and combustion emissions (Ni, Cr, V, and EC) rather than CPM from vehicular abrasion (Cu) and inorganic ions (NO3(-), SO4(2-) and Cl(-)) in urban areas. Implications: Limited information is currently available to provide the scientific basis for understanding the sources and physical and chemical variations of CPM, and their relations to air quality regulations and adverse health effects. This study investigates the historical trends of CPM mass and its chemical components in the Los Angeles Basin to advance our understanding on the impact of past and current air quality regulations on the coarse fraction of PM. The results of this study will aid policy makers to design more targeted regulations to control CPM sources to ensure substantial protection of public health from CPM exposure. Supplemental Materials: Supplemental materials are available for this article. Go to the publisher's online edition of the Journal of the Air & Waste Management Association for (1) details of the sampling sites and (2) the daily concentrations of high CPM/PM10 episodes.     

Observations Less than the Analytical Limit of Detection: A New Approach

Abstract

Solutions are given for plume rise assuming a power-law wind speed profile in a stably stratified layer for point and finite sources with initial vertical momentum and buoyancy. For a constant wind speed, these solutions simplify to the conventional plume rise equations in a stable atmosphere. In a shear layer, the point of maximum rise occurs further downwind and is slightly lower compared with the plume rise with a constant wind speed equal to the wind speed at the top of the stack. If the predictions with shear are compared with predictions for an equivalent average wind speed over the depth of the plume, the plume rise with shear is higher than plume rise with an equivalent average wind speed.     

A Comparative Study of Environmental Tobacco Smoke Particulate Mass Measurements in an Environmental Chamber

Particulate mass concentration measurements have been made on environmental tobacco smoke (ETS) for the purpose of assessing the relative accuracy of several measurement procedures. ETS over a range of concentrations was generated in an environmental chamber by three methods. Mass concentration was measured by a gravimetric/spectrophotometric collection procedure, piezoelectric particle mass monitors, two nephelometry-based mass monitors, and a particle counting and sizing system. Two-hour average mass concentrations were determined by each method for concentrations ranging from very low levels up to those achieved by smoking one entire cigarette in the chamber. Statistical comparisons were made among procedures employing the gravimetric filter measurement as the basis for comparison. One nephelometry-based procedure gave significantly higher and the other significantly lower values than the filter determination. In one case, a correction for the difference between the particle mass density of the calibrating aerosol and that of ETS brought the nephelometry-based procedure into reasonable agreement with the filter measurement, while for the other, the correction did not resolve the discrepancy between methods. Statistically significant differences between the responses of two supposedly identical piezoelectric mass monitors were found, as was some slight dependence of the nephelometry- based procedures on method of ETS generation. In summary, the results indicate that significant errors can be expected if the instruments studied are used “off the shelf,” even for ETS generated under controlled laboratory conditions. Caution should be employed in field measurements where numerous sources and types of particulate matter can be encountered.     

The Chattanooga School Children Study: Effects of Community Exposure to Nitrogen Dioxide

Elementary schools in four areas of Greater Chattanooga were selected for a study of the effects of community exposure to nitrogen dioxide. One area, in close proximity to a large TNT plant, had high NO₂ exposure, another had relatively high suspended particulate exposure, and two areas served as “clean” controls. The similarity of the economic levels of the High-NO₂ and Control areas and the moderately lower economic level of the High-Particulate area were documented. Pollutant concentrations for NO₂ gas, suspended nitrates and sulfates, total suspended particulates, and soiling index were measured at stations located within the study areas. Ventilatory performance of second-grade school children in the High-NO₂ exposure area was significantly lower than the performance of children in the Control areas. The data suggested that ventilatory performance was adversely affected only when an NO₂ threshold was exceeded but that above this threshold no further impairment of performance could be detected.