Impact of consistent boundary layer mixing approaches between NAM and CMAQ

Discrepancies in grid structure, dynamics and physics packages in the offline coupled NWS/NCEP NAM meteorological model with the U.S. Environmental Protection Agency Community Multiscale Air Quality (CMAQ) model can give rise to inconsistencies. This study investigates the use of three vertical mixing schemes to drive chemistry tracers in the National Air Quality Forecast Capability (NAQFC). The three schemes evaluated in this study represent various degrees of coupling to improve the commonality in turbulence parameterization between the meteorological and chemistry models. The methods tested include: (1) using NAM predicted TKE-based planetary boundary height, h, as the prime parameter to derive CMAQ vertical diffusivity; (2) using the NAM mixed layer depth to determine h and then proceeding as in (1); and (3) using NAM predicted vertical diffusivity directly to parameterize turbulence mixing within CMAQ. A two week period with elevated surface O₃ concentrations during the summer 2006 has been selected to test these schemes in a sensitivity study. The study results are verified and evaluated using the EPA AIRNow monitoring network and other ozonesonde data. The third method is preferred a priori as it represents the tightest coupling option studied in this work for turbulent mixing processes between the meteorological and air quality models. It was found to accurately reproduce the upper bounds of turbulent mixing and provide the best agreement between predicted h and ozonesonde observed relative humidity profile inferred h for sites investigated in this study. However, this did not translate into the best agreement in surface O₃ concentrations. Overall verification results during the test period of two weeks in August 2006, did not show superiority of this method over the other 2 methods in all regions of the continental U.S. Further efforts in model improvement for the parameterizations of turbulent mixing and other surface O₃ forecast related processes are warranted.     

Reproductive conflicts and egg discrimination in a socially polymorphic ant

The ability to discriminate against competitors shapes cooperation and conflicts in all forms of social life. In insect societies, workers may detect and destroy eggs laid by other workers or by foreign queens, which can contribute to regulate reproductive conflicts among workers and queens. Variation in colony kin structure affects the magnitude of these conflicts and the diversity of cues used for discrimination, but the impact of the number of queens per colony on the ability of workers to discriminate between eggs of diverse origin has so far not been investigated. Here, we examined whether workers from the socially polymorphic ant Formica selysi distinguished eggs laid by nestmate workers from eggs laid by nestmate queens, as well as eggs laid by foreign queens from eggs laid by nestmate queens. Workers from single- and multiple-queen colonies discriminated worker-laid from queen-laid eggs, and eliminated the former. This suggests that workers collectively police each other in order to limit the colony-level costs of worker reproduction and not because of relatedness differences towards queens’ and workers’ sons. Workers from single-queen colonies discriminated eggs laid by foreign queens of the same social structure from eggs laid by nestmate queens. In contrast, workers from multiple-queen colonies did not make this distinction, possibly because cues on workers or eggs are more diverse. Overall, these data indicate that the ability of F. selysi workers to discriminate eggs is sufficient to restrain worker reproduction but does not permit discrimination between matrilines in multiple-queen colonies.     

Impact of host community composition on Lyme disease risk

The drivers of variable disease risk in complex multi-host disease systems have proved very difficult to identify. Here we test a model that explains the entomological risk of Lyme disease (LD) in terms of host community composition. The model was parameterized in a continuous forest tract at the Cary Institute of Ecosystem Studies (formerly the Institute of Ecosystem Studies) in New York State, U.S.A. We report the results of continuing longitudinal observations (10 years) at the Cary Institute, and of a shorter-term study conducted in forest fragments in LD endemic areas of Connecticut, New Jersey, and New York, USA. Model predictions were significantly correlated with the observed nymphal infection prevalence (NIP) in both studies, although the relationship was stronger in the longer-term Cary Institute study. Species richness was negatively, albeit weakly, correlated with NIP (logistic regression), and there was no relationship between the Shannon diversity index (H') and NIP. Although these results suggest that LD risk is in fact dependent on host diversity, the relationship relies explicitly on the identities and frequencies of host species such that conventional uses of the term biodiversity (i.e., richness, evenness, H') are less appropriate than are metrics that include species identity. This underscores the importance of constructing interaction webs for vertebrates and exploring the direct and indirect effects of anthropogenic stressors on host community composition.     

Incorporating catastrophic risk assessments into setting conservation goals for threatened Pacific salmon

Catastrophic die-offs can have important consequences for vertebrate population growth and biodiversity, but catastrophic risks are not commonly incorporated into endangered-species recovery planning. Natural (e.g., landslides, floods) and anthropogenic (e.g., toxic leaks and spills) catastrophes pose a challenge for evolutionarily significant units (ESUs) of Pacific salmon listed under the Endangered Species Act and teetering at precariously low population levels. To spread risks among Puget Sound chinook salmon populations, recovery strategies for ESU-wide viability recommend at least two viable populations of historical life-history types in each of five geographic regions. We explored the likelihood of Puget Sound chinook salmon ESU persistence by examining spatial patterns of catastrophic risk and testing ESU viability recommendations for 22 populations of the threatened Puget Sound chinook salmon ESU. We combined geospatial information about catastrophic risks and chinook salmon distribution in Puget Sound watersheds to categorize relative catastrophic risks for each population. We then analyzed similarities in risk scores among regions and compared risk distributions among strategies: (1) population groups selected using the ESU viability recommendations of having populations spread out geographically and including historical life-history diversity, and (2) population groups selected at random. Risks from individual catastrophes varied among populations, but overall risk from catastrophes was similar within geographic regions. Recovery strategies that called for two viable populations in each of five geographic regions had lower risk than random strategies; strategies that included life-history diversity had even lower risks. Geographically distributed populations have varying catastrophic-risks profiles, thus identifying and reinforcing the spatial and life-history diversity critical for populations to respond to environmental change or needed to rescue severely depleted or extirpated populations. Recovery planning can promote viability of Pacific salmon ESUs across the landscape by incorporating catastrophic risk assessments.     

Impacts of urban greenspace on offsetting carbon emissions for middle Korea

Carbon dioxide is an important greenhouse gas and a major agent of climate change. This study quantified carbon (C) emissions from energy consumption and C storage and uptake by greenspace for three cities in middle Korea: Chuncheon, Kangleung, and Seoul. Carbon emissions were estimated using C emission coefficients for fossil fuels consumed. Carbon storage and uptake by woody plants were computed applying biomass equations and radial growth rates. The soils in Chuncheon were cored to analyze organic C storage. Annual C emissions were 37.0 t/ha/yr in Kangleung, 47.2 t/ha/yr in Chuncheon, and 264.9 t/ha/yr in Seoul. Mean C storage by woody plants ranged from 26.0 to 60.1 t/ha for natural lands within the study cities, and from 4.7 to 7.2 t/ha for urban lands (all land use types except natural and agricultural lands). Mean annual C uptake by woody plants ranged from 1.60 to 3.91 t/ha/yr for natural lands within the cities, and from 0.53 to 0.80 t/ha/yr for urban lands. There were no significant differences (95% confidence level) between the cities in C storage and uptake per ha for urban lands. Organic C storage in Chuncheon soils (to a depth of 60 cm) averaged 31.6 t/ha for natural lands and 24.8 t/ha for urban lands. Woody plants stored an amount of C equivalent to 6.0-59.1% of total C emissions within the cities, and annually offset total C emissions by 0.5-2.2%. Carbon storage in soils was 1.2 times greater than that by woody plants in Chuncheon. The C reduction benefits of woody plants were greater in Chuncheon and Kangleung, where areal distribution of natural lands was larger and the population density lower than in Seoul. Strategies to increase C storage and uptake by urban greenspace were explored.     

Soil-to-root transfer and translocation of polycyclic aromatic hydrocarbons by vegetables grown on industrial contaminated soils

Polycyclic aromatic hydrocarbons (PAHs) are possible contaminants in some former industrial sites, representing a potential risk to human health if these sites are converted to residential areas. This work was conducted to determine whether PAHs present in contaminated soils are transferred to edible parts of selected vegetables. Soils were sampled from a former gasworks and a private garden, exhibiting a range of PAH concentrations (4 to 53 to 172 to 1263 and 2526 mg PAHs kg-1 of dry soil), and pot experiments were conducted in a greenhouse with lettuce (Lactuca sativa L. var. Reine de Mai), potato (Solanum tuberosum L. var. Belle de Fontenay), and carrot (Daucus carota L. var. Nantaise). At harvest, above- and below ground biomass were determined and the PAH concentrations in soil were measured. In parallel, plates were placed in the greenhouse to estimate the average PAH-dust deposition. Results showed that the presence of PAHs in soils had no detrimental effect on plant growth. Polycyclic aromatic hydrocarbons were detected in all plants grown in contaminated soils. However, their concentration was low compared with the initial soil concentration, and the bioconcentration factors were low (i.e., ranging from 13.4 x 10(-4) in potato and carrot pulp to 2 x 10(-2) in potato and carrot leaves). Except in peeled potatoes, the PAH concentration in vegetables increased with the PAH concentration in soils. The PAH distribution profiles in plant tissues and in soils suggested that root uptake was the main pathway for high molecular weight PAHs. On the opposite, lower molecular weight PAHs were probably taken up from the atmosphere through the leaves as well as by roots.     

Prenatal diagnosis of congenital non-bullous ichthyosiform erythroderma (lamellar ichthyosis)

We report the first positive prenatal diagnosis ofcongenital non-bullous ichthyosiform erythroderma or lamellar ichthyosis. Fetal skin samples were obtained by fetoscopy at 21 weeks' gestation and examined by light and electron microscopy. Light microscopy revealed a thickened interfollicular epidermis with multiple layers of flattened cells and excessive keratinization of the epidermal lining of the follicular infundibulum. Electron microscopy of the thickened epidermis revealed granular cells that contained larger-than-normal keratohyalin granules and multiple layers of parakeratotic cornified cells. Although there was regional variation in the degree of interfollicular keratinization, follicles from all regions showed greater and more complete keratinization, indicating that they express the abnormality early enough in development to permit prenatal diagnosis at about 20 weeks' gestation.     

Fluorescence in situ hybridization (FISH) for rapid detection of aneuploidy: experience in 911 prenatal cases†

Fluorescence in situ hybridization (FISH) was performed with probes specific for chromosomes 13, 18, 21, X and Y on 911 of 11123 (8.2%) amniotic fluid samples submitted to the present authors' laboratory for cytogenetic analysis over an 8-year period. Altogether 3516 hybridizations were performed with an interpretable FISH result on all chromosomes requested in 884/911 (97%) of cases. An uninformative FISH result occurred in 44 hybridizations among 27 cases (3%). Of a total of 89 karyotypically proven cases with aneuploidy that might have been detected by FISH, the overall detection rate was 84%. An inconclusive or incomplete FISH result occurred in 9/89 (10%) of these proven aneuploid cases. In the remaining 80 informative proven aneuploid cases, correct detection of aneuploidy was accomplished in 75/80 (94%) of samples. A false-negative result occurred in the remaining 5/80 (6%) of such informative cases. Eighteen cases had karyotypically proven abnormalities that could not have been detected by the targeted FISH. Aside from these 18 cases, FISH allowed correct detection of normal disomy in 785/804 (98%) of such cases. An incomplete FISH result occurred in 18 normal disomic cases. There was a single possible ‘false-positive’ FISH result for chromosome 21. Interphase FISH analysis of uncultured amniotic fluid cells has been shown to be a useful laboratory tool for rapid fetal aneuploidy screening during pregnancy. As with all clinical laboratory diagnostic tests, incomplete or inconclusive results (or even interpretive errors) occur in a small percentage of cases. Nevertheless, FISH results accompanied by other data and by appropriate counseling provide clinicians and patients with valuable information for clinical decision-making surrounding family planning and pregnancy management. Copyright © 2001 John Wiley & Sons, Ltd.     

Assessing potential risks to wildlife and sportsmen from exposure to dioxin in pulp and paper mill sludge spread on managed woodlands

Potential human and wildlife exposures to TCDD in landspread pulp and paper mill sludge in the State of Maine were evaluated by means of a human health and an ecological risk assessment methodology. The highest historical concentrations of TCDD reported for these sludges do not present a risk to American woodcock, selected as an indicator species for this analysis. Concentrations of TCDD as high as 50 ppt in soil are not likely to produce adverse effects in the embryonic/hatchling stage of the woodcock. This soil concentration of TCDD does not present a significant risk to sportsmen and their families that may consume birds which inhabit these sites.     

Colloidal phosphorus in surface runoff and water extracts from semiarid soils of the western United States

Colloidal particles in runoff may have an important role in P transfer from soils to waterbodies, but remain poorly understood. We investigated colloidal molybdate-reactive phosphorus (MRP) in surface runoff and water extracts of calcareous arable soils from the semiarid western United States. Colloidal MRP was determined by ultrafiltration and operationally defined as MRP associated with particles between 1 microm and 1 nm diameter, although a smaller pore-size filter (0.3 nm) was used to define the lower size limit of colloids in water extracts. In surface runoff from three calcareous soils generated by simulated sprinkler irrigation, colloidal MRP concentrations ranged between 0.16 and 3.07 microM, constituting between 11 and 56% of the MRP in the <1-microm fraction. Concentrations were strongly correlated with agronomic and environmental soil-test P concentrations for individual soils. Water extracts of a range of similar soils contained two size fractions of colloidal MRP: a larger fraction (1.0-0.2 microm) probably associated with fine clays, and a smaller fraction (3-0.3 nm) probably associated with Ca-phosphate minerals. Colloidal MRP was solubilized in the acidic medium of the colorimetric detection procedure, suggesting that a fraction of the filterable MRP in runoff from calcareous soils may not be as readily bioavailable as free phosphate in waterbodies. Our results suggest that colloidal MRP is an important but poorly understood component of P transfer in runoff from calcareous western U.S. soils and should be given greater consideration in mechanistic studies of the P transfer process.