Monitoring of genetically modified Escherichia coli in laboratory wastewater

Containment of genetically modified (GM) microorganisms such as Escherichia coli is a legal requirement to protect the environment from an unintended release and to avoid horizontal gene transfer (HGT) of recombinant DNA to native bacteria. In this study, we sampled the laboratory wastewater (LWW) at a large Swiss university from three sources over 2 years and cultured ampicillin-resistant, presumptive GM E. coli. From a total of 285 samples, 127 contained presumptive GM E. coli (45%) at a mean concentration of 2.8 × 10² CFU/ml. Plasmid DNA of 11 unique clones was partially or entirely sequenced. All consisted of cloning vectors harboring research-specific inserts. To estimate the chance of HGT between GM E. coli and native bacteria in LWW, we identified taxa representative for the bacterial community in LWW using 16S rRNA amplicon sequencing and measured conjugation frequencies of E. coli with five LWW isolates. At optimal conjugation conditions, frequencies were between 3.4 × 10⁻³ and 2.4 × 10⁻⁵. Given the absence of transferable broad-host range plasmids and suboptimal conjugation conditions in the LWW system, we conclude that the chance of HGT is relatively low. Still, this study shows that the implementation of robust containment measures is key to avoid the escape of GM microorganisms.

     

Natural alkalinity generation in neutral lakes affected by acid mine drainage

Lakes in surface mining areas are often subject to continuous loads of acid mine drainage. The knowledge of internal alkalinity generation in a lake is necessary to predict if the lake will stay circumneutral or may acidify. The most important processes of alkalinity production in lakes are sulfate reduction, denitrification, and the burial of N in the sediment. By summarizing data from the literature, we present probable rates of these different processes in circumneutral mining lakes. The critical acidity load that can probably be compensated for by internal processes, is 5.09 mmol(-) m(-2) d(-1) in productive lakes and 0.50 mmol(-) m(-2) d(-1) in less productive lakes. Under the assumption that methanogenesis is inhibited by high sulfate concentrations, the highest probable acidity loads in such lakes are 6.85 mmol(-) m(-2) d(-1) and 1.06 mmol(-) m(-2) d(-1), respectively. Denitrification, sulfate reduction, and N burial contributed significantly to total alkalinity production. Sulfate reduction had the largest potential. However, existing models cannot predict alkalinity generation from sulfate concentrations alone because the long-term stability of reduced S compounds in the sediment is crucial for a sustainable biological alkalinity generation. The larger acid-neutralizing potential of higher trophic lakes is caused both by higher rates of microbial activity and by a greater stability of reduced reaction products in the sediment. The largest uncertainties in our knowledge with respect to the total alkalinity budget are related to microbial processes in sulfate-rich freshwater lakes and the long-term stability of reduced reaction products in the sediment.     

Deforestation and cattle expansion in the Paraguayan Chaco 1987–2012

Regional Environmental Change - The dry forests of Latin America are among the most dynamic deforestation frontiers in the world and are important carbon and biodiversity reservoirs. Our knowledge...     

The role of private rural properties for conserving native vegetation in Brazilian Southern Amazonia

Regional Environmental Change - The State of Mato Grosso in Brazil has undergone intensive land use changes over the past decades. Native ecosystems have been converted into agrosystems for the...     

The opposing effects of bacterial activity and gas production on anaerobic TCE degradation in soil columns

This laboratory study explores the effect of growth substrate concentration on the anaerobic degradation of trichloroethylene (TCE) in sand packed columns. In all columns the growth substrate rapidly degraded to gas, that formed a separate phase. Biomass accumulated in the 0–4.8 cm section of the columns in proportion to the influent growth substrate concentration and biomass concentrations in the remaining sections of all columns were similar to the column receiving the lowest substrate concentration. Increases in growth substrate concentration up to 3030 mg-COD l⁻¹ promoted TCE degradation, but a further increase to 14 300 mg-COD l⁻¹ reduced the amount of TCE completely dechlorinated but did not affect the production of chlorinated TCE intermediates. The mathematical model developed here satisfactorily described the enhancement in TCE dehalogenation for substrate concentration up to 3030 mg-COD l⁻¹; reproducing TCE dehalogenation for 14 300 mg-COD l⁻¹ required that the moisture content used in simulation be lowered to 0.1. The study shows that volatilization of TCE can be significant and volatilization losses should be taken into account when anaerobic activity in in-situ bioremediation applications is stimulated via addition of growth substrates. An implication of the modeling simulations is that maintaining a lower, but uniform, substrate concentration over the contaminated region may lead to faster contaminant degradation.     

Understanding the distribution of cattle production systems in the South American Chaco

ABSTRACT

Impacts of cattle production vary among different production systems, but data on their distribution is scarce for most world regions. In this work, we combine datasets on cattle vaccination locations and land cover in a regression framework to define and map major cattle production systems in the Argentinean Dry Chaco. We also explore how cattle occurrence relates to spatial determinants. Results indicate that the region harbors about 5.5 million heads. Cattle density was mainly described by the share of pasture (69.9%), cropland (28.1%) and aridity (23.8%). We identified 12-major cattle production systems: six cow-calf, three whole-cycle, and three fattening systems. Of these, four systems had high woodland cover (>85%). Data generated is available in a website. Understanding the distribution of cattle production systems is important to assess the environmental impacts of beef production at broad scales. Integrating vaccination data with land-cover information provides a promising avenue to identify livestock systems.     

Assessment of in situ biodegradation of monochlorobenzene in contaminated groundwater treated in a constructed wetland

The degradation of monochlorobenzene (MCB) was assessed in a constructed wetland treating MCB contaminated groundwater using a detailed geochemical characterisation, stable isotope composition analysis and in situ microcosm experiments. A correlation between ferrous iron mobilisation, decreasing MCB concentration and enrichment in carbon isotope composition was visible at increasing distance from the inflow point, indicating biodegradation of MCB in the wetland. Additionally, in situ microcosm systems loaded with 13C-labelled MCB were deployed for the first time in sediments to investigate the biotransformation of MCB. Incorporation of 13C-labelled carbon derived from the MCB into bacterial fatty acids substantiated in situ degradation of MCB. The detection of 13C-labelled benzene indicated reductive dehalogenation of MCB. This integrated approach indicated the natural attenuation of the MCB in a wetland system. Further investigations are required to document and optimise the in situ biodegradation of MCB in constructed and natural wetland systems treating contaminated groundwater.     

A high-definition spatially explicit modelling approach for national greenhouse gas emissions from industrial processes: reducing the errors and uncertainties in global emission modelling

Mitigation and Adaptation Strategies for Global Change - Industrial processes cause significant emissions of greenhouse gases (GHGs) to the atmosphere and, therefore, have high mitigation and...     

Using Slides to Test for Changes in Crown Defoliation Assessment Methods. Part I: Visual Assessment of Slides

In this study we used photographs of tree crowns to test whether the assessment methods for tree defoliation in Switzerland have changed over time. We randomly selected 24 series of slides of Norway spruce with field assessments made between 1986 and 1995. The slides were randomly arranged and assessed by three experts without prior knowledge of the year when the slide was taken or the tree number. Defoliation was assessed using the Swiss reference photo guide. Although the correlations between the field assessments and slide assessments were high (Spearman's rank correlation coefficient ranged between 0.79 and 0.83), we found significant differences between field and slide assessments (4.3 to 9% underprediction by the slide assessors) and between the slide assessments. However, no significant trends in field assessment methods could be detected. When the mean differences between field and slide assessments were subtracted, in some years, field assessors consistently underpredicted (1990, 1992) or overpredicted defoliation (1987, 1991). Defoliation tended to be overpredicted in slides taken against the light, and underpredicted for trees with more than 25% crown overlap. We conclude that slide series can be used to detect changes in assessment methods. However, potential observer bias calls for more objective methods of assessment.