New methodological strategies for detecting bacterial indicators

The development of monitoring strategies for the early warning of seawater pollution, with particular reference to faecal and hydrocarbon contamination, has been the specific goal of research carried out within the Cluster 10-SAM (Advanced Systems for Coastal Marine Monitoring) Project, funded by the Italian Ministry for University and Scientific Research. Advanced analytical approaches have been designed and applied to detect bacterial species that have been selected as potential indicators of pollution in seawater samples. We report the results obtained using the fluorescent antibody and enzymatic assays for the detection of Escherichia coli, and a real-time PCR protocol for monitoring marine areas for hydrocarbon pollution. Immunofluorescence and enzymatic methods revealed the occurrence of different faecal pollution levels, reaching 10⁵ E. coli cells 100 ml^?1 in the Straits of Messina. Real-time PCR results corresponded to the different degree of oil pollution of the analysed samples. The specificity and speed make these methods promising for the detection and evaluation of marine pollution.     

Government liabilities for disaster risk in industrialized countries: a case study of Australia

This paper explores sovereign risk preferences against direct and indirect natural disasters losses in industrialized countries. Using Australia as a case study, the analysis compares expected disaster losses and government capacity to finance losses. Utilizing a national disaster loss dataset, extreme value theory is applied to estimate an all-hazard annual loss distribution. Unusually but critically, the dataset includes direct as well as indirect losses, allowing for the analysis to consider the oft-ignored issue of indirect losses. Expected annual losses (direct, and direct plus indirect) are overlaid with a risk-layer approach, to distinguish low, medium and extreme loss events. Each risk layer is compared to available fiscal resources for financing losses, grounded in the political reality of Australian disaster financing. When considering direct losses only, we find support for a risk-neutral preference on the part of the Australian government for low and medium loss levels, and a risk-averse preference in regard to extreme losses. When indirect losses are also estimated, we find that even medium loss levels are expected to overwhelm available fiscal resources, thereby violating the available resources assumption underlying arguments for sovereign risk neutrality. Our analysis provides empirical support for the assertion that indirect losses are a major, under-recognised concern for industrialized countries. A risk-averse preference in regard to medium and extreme loss events recommends enhanced investment in both corrective and prospective risk reduction in relation to these risks level, in particular to reduce indirect losses.     

Environmental Conditions Leading to Shellfish Contamination and Related Outbreaks

Human fecal wastes contain a large variety of viruses that can enter the environment through discharge of waste materials from infected individuals. Despite the high diversity of viruses that are introduced into the environment by human fecal pollution, only a few have been recognized to cause disease in association with consumption of contaminated shellfish. To explain bivalve mollusks contamination, several factors including human epidemiology, virus persistence through sewage treatment plant, and shellfish uptake may be suggested. Considering different outbreaks described in the literature, the most common route for transmission is accidental contamination after heavy rainfall, when extra loads cause an overflow, and release of untreated sewage into the aquatic environment. Outbreak analysis also demonstrates the impact on shellfish consumption of some viral strain transmission and thus their impact on molecular epidemiology, especially for norovirus. To limit shellfish contamination and thus to protect the consumer, the most desirable and effective option is to reduce the viral input.     

Evaluation of phytotoxicity of three organic amendments to collard greens using the seed germination bioassay

Environmental Science and Pollution Research - Small-scale vegetable and fruit crop producers in the USA use locally available commercial organic fertilizers and soil amendments recycled from...     

Comparative analysis of regional water quality in Canada using the Water Quality Index

The Canadian Council of Ministers for the Environment (CCME) has developed a Water Quality Index (WQI) to simplify the reporting of complex water quality data. This science-based communication tool tests multi-variable water data against numeric water quality guidelines and/or objectives to produce a single unit-less number that represents overall water quality. The CCME WQI has been used to rate overall water quality in spatial and temporal comparisons of site(s). However, it has not been used in a comparative-analysis of exposure sites to reference sites downstream of point source discharges. This study evaluated the ability of the CCME WQI to differentiate water quality from metal mines across Canada at exposure sites from reference sites using two different types of numeric water quality objectives: (1) the water quality guidelines (WQG) for the protection of freshwater aquatic life and (2) water quality objectives determined using regional reference data termed Region-Specific Objectives (RSO). The application of WQG to the CCME WQI was found to be a good tool to assess absolute water quality as it relates to national water quality guidelines for the protection of aquatic life, but had more limited use when evaluating spatial changes in water quality downstream of point source discharges. The application of the RSO to the CCME WQI resulted in assessment of spatial changes in water quality downstream of point source discharges relative to upstream reference conditions.     

Beyond the desertification narrative: a framework for agricultural drought in semi-arid East Africa

In the 20th century, much research was done on desertification. Desertification developed into a complex and vague construct that means land degradation under specific conditions. Projects focusing on land degradation in semiarid East Africa have met with limited success because farmers prioritize drought as the major productivity-reducing problem. Yet studies on long-term rainfall trends have not confirmed that droughts are more frequent. In this article, we combine drought and land degradation effects into an Agricultural Drought Framework, which departs from the farmers' prioritization of drought and accommodates scientists' concern for land degradation. It includes meteorological drought, soil water drought, and soil nutrient drought. The framework increases insight into how different land degradation processes influence the vulnerability of land and farmers to drought. A focus on increased rainwater use efficiency will address both problems of land degradation and drought, thereby improving productivity and food security in semiarid East Africa.     

Simulation tools to support bathing water quality management: Escherichia coli bacteria in a Baltic lagoon

Insufficient hygienic water quality and bathing prohibitions are still a serious problem in the Szczecin Lagoon (southern Baltic). In our study we focus on the southern lagoon coast and analyse the causes and consequences of high Escherichia coli bacteria concentrations. For this purpose we carry out laboratory experiments on the behaviour of E.coli in the lagoon, a literature review and apply a three-dimensional flow model together with a Lagrangian particle tracking routine. Three major E.coli sources, the Uecker river, the wetlands with cattle as well as sea gulls with bathing and fisheries were allocated, quantified and compiled into an emission scenario. This serves as input for transport simulations under different wind conditions and for the development of a spatial contamination map. Reasons for high E.coli concentrations in the lagoon are a permanent supply from different sources and the special environmental situation in the lagoon. The availability of organic matter, either in form of reed stems or as muddy sediments, has a positive effect on bacteria survival. Very important, too, are the prevailing wind and flow conditions, which cause water and organism transport in narrow ribbons along the coastline and promote near-shore accumulations. Even in our shallow lagoon, the application of a 3D-model is beneficial. Heavy rains are, very likely, responsible for the outstanding high total-coliform concentrations of 11,000?cfu/100?ml on August 21, 2006. The model system proved to be a valuable tool for spatial analysis and is suitable to support the development of bathing water profiles according to the EU Bathing Water Directive (2006/7/EC).     

Fractionation of rare earth and other trace elements in crabs, Ucides cordatus, from a subtropical mangrove affected by fertilizer industry

Fractionation of rare earth elements (REE) and other trace metal concentrations (Th, U, Cd, Cr, Cu, Ni, Pb, and Zn) between mangrove sediments and claw muscles and shells of male crabs (Ucides cordatus) from a subtropical estuary highly impacted by fertilizer industry activities was investigated. This is the first record of REE distribution in these organisms, and the results showed higher accumulations of these metals, U and Th in shells, probably related to the replacement of Ca during molting. Contents of Cd, Cr and Ni were similar in both tissues, but Cu, Zn and Pb were mostly accumulated in the claw muscle with concentrations above those considered safe for human consumption according to the Brazilian legislation. REE fractionation was different in the analyzed tissues being softer in the shells. The results provided evidences that the water absorbed during molting controls the chemistry of REE in shells. In contrast, the chemistry of REE in the claw muscle, in which was observed preferential absorption of light REE, is controlled by diet. REE fractionation obtained for the claw muscles was closely correlated to the observed in the contaminated substrate and in materials related to the production of phosphate fertilizers (contamination source), which supports their transference to this Ucides cordatus tissue without fractionation by the ingestion of sediments. Our results showed the potential use of crab tissues for monitoring REE and trace element sources in mangrove areas, with claw muscle exhibiting the contaminant source fingerprint.     

Detection of Potential Infectious Enteric Viruses in Fresh Produce by (RT)-qPCR Preceded by Nuclease Treatment

Foodborne illnesses associated with contaminated fresh produce are a common public health problem and there is an upward trend of outbreaks caused by enteric viruses, especially human noroviruses (HNoVs) and hepatitis A virus (HAV). This study aimed to assess the use of DNase and RNase coupled to qPCR and RT-qPCR, respectively, to detect intact particles of human adenoviruses (HAdVs), HNoV GI and GII and HAV in fresh produce. Different concentrations of DNase and RNase were tested to optimize the degradation of free DNA and RNA from inactivated HAdV and murine norovirus (MNV), respectively. Results indicated that 10 µg/ml of RNase was able to degrade more than 4 log₁₀ (99.99%) of free RNA, and 1 U of DNase degraded the range of 0.84–2.5 log₁₀ of free DNA depending on the fresh produce analysed. The treatment with nucleases coupled to (RT)-qPCR was applied to detect potential infectious virus in organic lettuce, green onions and strawberries collected in different seasons. As a result, no intact particles of HNoV GI and GII were detected in the 36 samples analysed, HAdV was found in one sample and HAV was present in 33.3% of the samples, without any reasonable distribution pattern among seasons. In conclusion, RT-qPCR preceded by RNase treatment of eluted samples from fresh produce is a good alternative to detect undamaged RNA viruses and therefore, potential infectious viruses. Moreover, this study provides data about the prevalence of enteric viruses in organic fresh produce from Brazil.