Statistical Estimation and Model Selection of Species-Accumulation Functions

Abstract:  Soberón and Llorente (1993) proposed pure-birth stochastic processes as theoretical models for species-accumulation curves, and these processes have frequently been used to describe the progress of biological inventories. We describe, in algorithmic form, an alternative statistical analysis based on a likelihood approach ( Díaz-Francés & Gorostiza 2002 ) that provides mathematical rigor to the ideas in Soberón and Llorente (1993) and improves the estimation of the models by incorporating the facts that the variance of the error is not constant and that the observations are correlated. Additionally, we used the likelihood ratios between candidate models as an objective procedure for model selection, allowing comparison between the goodness of fit of various models. The software for these statistical methods can now be downloaded off the Internet. We used two examples of butterfly data sets to illustrate the use of the methods and the software.     

Real-time PCR with molecular beacons provides a highly accurate assay for detection of Tay-Sachs alleles in single cells

The results presented here provide the first single-cell genetic assay for Tay-Sachs disease based on real-time PCR. Individual lymphoblasts were lysed with an optimized lysis buffer and assayed using one pair of primers that amplifies both the wild type and 1278 + TATC Tay-Sachs alleles. The resulting amplicons were detected in real time with two molecular beacons each with a different colored fluorochrome. The kinetics of amplicon accumulation generate objective criteria by which to evaluate the validity of each reaction. The assay had an overall utility of 95%, based on the detection of at least one signal in 235 of the 248 attempted tests and an efficiency of 97%, as 7 of the 235 samples were excluded from further analysis for objective quantitative reasons. The accuracy of the assay was 99.1%, because 228 of 230 samples gave signals consistent with the genotype of the cells. Only two of the 135 heterozygous samples were allele drop-outs, a rate far lower than previously reported for single-cell Tay-Sachs assays using conventional methods of PCR. Copyright © 2002 John Wiley & Sons, Ltd.     

Spatiotemporal coupling/decoupling of planktonic larvae and benthic settlement in decapods in the Scottish east coast

Settlement patterns and the relationship between meroplanktonic larvae and settlement in decapods were studied on the Scottish east coast. Artificial settlement substrates (ASS), deployed at two locations (sandy vs. rocky sea substrates), were employed to collect megalopae and newly settled juveniles. Abundance of meroplanktonic larvae was used as an indicator of larval supply. The results showed a clear seasonality in settlement rates, and in some cases, significant differences between sites were detected. Nevertheless, the interference of the ASS with the surrounding habitat limits the study of spatial variability in settlement rates. Significant cross-correlation was found between the abundance of megalopae and juveniles in the collectors and planktonic larval abundance a month earlier. For individual species, this relationship was observed only in Pisidia longicornis. Complexities caused by the great variety of pre- and post-settlement processes, alongside effects of secondary dispersals of early juveniles may have obscured the relationship between meroplanktonic larvae and juveniles in other species.     

环境因素对六氯苯厌氧降解活性的影响

在厌氧污泥具备了较好的六氯苯（HCB）降解能力的基础上,采用标准血清瓶实验方法考察了反应温度、初始pH、摇床转速和营养元素等环境因素对厌氧污泥降解HCB活性的影响。实验设计的反应温度为25、30、35和40℃;初始pH为5.0、6.0、7.0和8.0;摇床转速为0和150r·min-1;营养元素有葡萄糖和维生素b12。用HCB浓度随时间的减少来表征微生物对其的降解活性。结果表明,反应温度对HCB的降解速率有很大影响,适宜温度为35℃左右。初始pH对HCB降解活性没有显著影响,但显示出有随初始pH增大而HCB降解活性增加的趋势。与静置条件相比,一定的混合作用有利于提高HCB的降解活性。有葡萄糖存在条件下,维生素b12对HCB的降解活性有明显的促进作用。温度及外加碳源（葡萄糖）是影响HCB厌氧降解活性的重要因素,并推测葡萄糖在HCB降解过程中提供电子供体方面发挥了重要作用。     

PC-BEIS: A Personal Computer Version of the Biogenic Emissions Inventory System

The U.S. Environmental Protection Agency’s Biogenic Emissions Inventory System (BEIS) has been adapted for use on IBM-compatible personal computers (PCs). PC-BEIS estimates hourly emissions of Isoprene, α-plnene, other monoterpenes, and unidentified hydrocarbons for any county In the contiguous United States. To run the program, users must provide hourly data on ambient temperature, relative humidity, wind speed, cloud cover, and a code that Identifies the particular county. This paper provides an overview of the method used to calculate biogenic emissions, shows an example application, and gives information on how to obtain a copy of the program.     

厌氧混合培养条件下六氯苯生物降解的外加碳源必要性

采用标准血清瓶实验探讨了厌氧污泥对六氯苯(HCB)的降解活性以及各种环境因素的影响.结果表明,经过14d的HCB驯化,厌氧污泥具备了较好的降解HCB能力;反应温度对HCB的降解速率有很大影响,适宜温度为35℃左右;葡萄糖、甲酸、乙酸、丙酸和丁酸等有机碳源的存在明显促进了HCB的厌氧降解,其中甲酸和乙酸的加入极其重要;根据实验结果推测出,产甲烷过程对HCB的生物降解发挥了重要作用.     

Electrochemical oxidation of PFOA and PFOS in concentrated waste streams

The electrochemical oxidation (EO) of environmentally persistent perfluorooctanoic acid (PFOA) and perfluorooctanesulfonic acid (PFOS) with a Magnéli phase Ti₄O₇ electrode was investigated in this study. After 3 hours (hr) of electrolysis, 96.0 percent of PFOA (10 milligrams per liter [mg/L] in 100 milliliters [mL] 100 millimolar [mM] Na₂SO₄ solution) was removed following pseudo first‐order kinetics (k = 0.0226 per minute [min]) with the degradation half‐life of 30.7 min. Under the same treatment conditions, PFOS (10 mg/L in 100 mL 100 mM Na₂SO₄ solution) removal reached 98.9 percent with a pseudo first‐order degradation rate constant of 0.0491/min and the half‐life of 14.1 min. Although, the degradation of PFOA was slower than PFOS, when subjected to EO treatment in separate solutions, PFOA appeared to degrade faster than PFOS when both are present in the same solution, indicating possible competition between PFOA and PFOS during Ti₄O₇ anode‐based EO treatment with PFOA having the competitive advantage. Moreover, the EO treatment was applied to degrade highly concentrated PFOA (100.5 mg/L) and PFOS (68.6 mg/L) in ion‐exchange resin regenerant (still bottom) with high organic carbon content (15,800 mg/L). After 17‐hr electrolysis, the total removal of PFOA and PFOS was 77.2 and 96.5 percent, respectively, and the fluoride concentration increased from 0.84 mg/L to 836 mg/L. Also, the dark brown color of the original solution gradually faded during EO treatment. In another test using still bottom samples with lower total organic carbon (9,880 mg/L), the PFOA (15.5 mg/L) and PFOS (25.5 mg/L) concentrations were reduced to levels below the limits of quantification after 16‐hr treatment. In addition, the performance of EO treatment using different batch reactor setups was compared in this study, including one‐sided (one anode:one cathode) and two‐sided (one anode:two cathodes) setups. The two‐sided reactor configuration significantly enhanced the degradation efficiency, likely due to the larger anode area available for reactions.     

基于环境监测的矿井通风三维仿真辅助决策系统设计

为优化金属矿山矿井通风系统及辅助决策设计,弥补常用矿井通风仿真解算软件在环境监测、实时解算和辅助决策方面的不足,基于矿井通风理论、环境监测、计算机与通信技术开发矿井通风三维仿真辅助决策系统。提出通过利用实时监测到的井下通风环境参数（风量、风速等）和已存储在系统数据库里的巷道参数,实现对矿井通风网络实时解算,并将其应用到山金阿尔哈达矿井通风系统中。结果表明:矿井通风三维仿真辅助决策系统同步实现了山金阿尔哈达矿井通风系统的环境监测、风网实时解算和三维仿真模拟,提高了其矿井通风管理水平,为矿井通风系统改造优化设计和矿井向深部中段延伸时的通风系统设计提供辅助决策依据。     

Use and attack on expert testimony in toxic substances litigation∗

Expert testimony is available in cases where persons, qualified through skill, knowledge, experience, education or training can be helpful to the trier of the facts in coming to a determination. Historically, courts have given experts wide latitude with respect to their qualifications as well as to the bases of their opinions. Recently, some courts, because of concern about a developing body of “professional experts”, are taking steps to more carefully survey the opinion of experts before permitting their testimony to get to the jury. Both the historical development and some of the recent decisions are discussed.     

The influence of ants on host plant selection by Jalmenus evagoras,a myrmecophilous lycaenid butterfly

Summary (1) Females of the myrmecophilous lycaenid butterfly, Jalmenus evagoras are far more likely to lay eggs on plants that contain their attendant ants, Iridomyrmex sp. 25 than on plants without ants, although the clutch sizes of individual egg masses laid in either situation is the same. (2) Ovipositing females respond to the presence or absence of ants before they alight on a potential food plant. Once they have landed, they are equally likely to ley eggs whether or not they encounter ants. (3) Ovipositing females prefer to lay eggs on plants that contain ant tended homopterans than on plants that contain only a few foraging ants. The presence of ant tended homopterans can act as a strong stimulus to induce females to lay eggs on plant species that differ from their original host species. (4) Ant dependent oviposition behavior has been described or suggested in 46 species of lycaenid and one riodinid. In general, the more dependent a species is upon ants for either food or protection, the more likely it is to use ants as cues in oviposition. Prominent characteristics of lycaenids that have ant dependent oviposition are described and discussed. (5) Myrmecophilous lycaenids that may use ants as cues in oviposition feed on a significantly wider range of plants than non-myrmecophilous lycaenids. Possible reasons for this pattern and its ecological significance are discussed.