Faecal Coliforms in Bivalve Harvesting Areas of the Alvor Lagoon (Southern Portugal): Influence of Seasonal Variability and Urban Development

Faecal coliform (FC) levels in surface water and clams (Ruditapes decussatus) and variations in environmental parameters were studied in two bivalve harvesting areas in the Alvor lagoon (southern Portugal). Land use and cover characteristics in adjacent subwatersheds were also analysed to assess their contributions as sources of faecal contamination. High FC levels in clams from the harvesting area in the most urbanized subwatershed (impervious surface coverage ≈ 10.5%) were positively associated with rainfall and with the cooler periods of the year. FC levels in clams from the least urbanized subwatershed were generally very low and did not present any detectable seasonal trend. From these results, it was concluded that the periodic deterioration of the microbiological quality of clams derives from the cumulative impact of the reservoir of faecal contamination created in urbanized areas, entering into the lagoon during storm water runoff.     

Automatic habitat classification methods based on satellite images: A practical assessment in the NW Iberia coastal mountains

Although remote sensing is increasingly in use for habitat mapping, traditional image classification methods tend to suffer shortcomings due to non-normality of spectral signatures, as well as overlapping and heterogeneity in radiometric responses of natural and semi natural vegetation. Methods using non-parametric classifiers and object-oriented analysis have been suggested as possible solutions for overcoming these limitations. In this paper, we aimed at evaluating the performance of some of these techniques for the European Natura 2000 network of protected areas habitats mapping. For this purpose, we tested different methods of supervised image classification in the Northern Mountains of Galicia, Spain, an area included in the Natura 2000 network, which is characterized by a highly heterogeneous landscape. Methods involved the use of maximum likelihood and nearest neighbour decision rules in per-pixel and per-object classification analyses on Landsat TM imagery. Per-object classifications were completed using the segment mean and segment means plus standard deviation feature spaces. The results showed the existence of significant differences in the accuracies for the different methodologies, their strengths and weaknesses and identified the most adequate approach for habitat mapping. Analyses pointed out that significant improvements in accuracy were achieved only under certain combinations of per-object analysis, non-parametric classifiers and high dimensionality feature space.     

Assessing the wildlife habitat value of New England salt marshes: II. Model testing and validation

We tested a previously described model to assess the wildlife habitat value of New England salt marshes by comparing modeled habitat values and scores with bird abundance and species richness at sixteen salt marshes in Narragansett Bay, Rhode Island USA. As a group, wildlife habitat value assessment scores for the marshes ranged from 307-509, or 31-67% of the maximum attainable score. We recorded 6 species of wading birds (Ardeidae; herons, egrets, and bitterns) at the sites during biweekly survey. Species richness (r (2)=0.24, F=4.53, p=0.05) and abundance (r (2)=0.26, F=5.00, p=0.04) of wading birds significantly increased with increasing assessment score. We optimized our assessment model for wading birds by using Akaike information criteria (AIC) to compare a series of models comprised of specific components and categories of our model that best reflect their habitat use. The model incorporating pre-classification, wading bird habitat categories, and natural land surrounding the sites was substantially supported by AIC analysis as the best model. The abundance of wading birds significantly increased with increasing assessment scores generated with the optimized model (r (2)=0.48, F=12.5, p=0.003), demonstrating that optimizing models can be helpful in improving the accuracy of the assessment for a given species or species assemblage. In addition to validating the assessment model, our results show that in spite of their urban setting our study marshes provide substantial wildlife habitat value. This suggests that even small wetlands in highly urbanized coastal settings can provide important wildlife habitat value if key habitat attributes (e.g., natural buffers, habitat heterogeneity) are present.     

Phylogeny and metabolic scaling in mammals

The scaling of metabolic rates to body size is widely considered to be of great biological and ecological importance, and much attention has been devoted to determining its theoretical and empirical value. Most debate centers on whether the underlying power law describing metabolic rates is 2/3 (as predicted by scaling of surface area/volume relationships) or 3/4 ("Kleiber's law"). Although recent evidence suggests that empirically derived exponents vary among clades with radically different metabolic strategies, such as ectotherms and endotherms, models, such as the metabolic theory of ecology, depend on the assumption that there is at least a predominant, if not universal, metabolic scaling exponent. Most analyses claimed to support the predictions of general models, however, failed to control for phylogeny. We used phylogenetic generalized least-squares models to estimate allometric slopes for both basal metabolic rate (BMR) and field metabolic rate (FMR) in mammals. Metabolic rate scaling conformed to no single theoretical prediction, but varied significantly among phylogenetic lineages. In some lineages we found a 3/4 exponent, in others a 2/3 exponent, and in yet others exponents differed significantly from both theoretical values. Analysis of the phylogenetic signal in the data indicated that the assumptions of neither species-level analysis nor independent contrasts were met. Analyses that assumed no phylogenetic signal in the data (species-level analysis) or a strong phylogenetic signal (independent contrasts), therefore, returned estimates of allometric slopes that were erroneous in 30% and 50% of cases, respectively. Hence, quantitative estimation of the phylogenetic signal is essential for determining scaling exponents. The lack of evidence for a predominant scaling exponent in these analyses suggests that general models of metabolic scaling, and macro-ecological theories that depend on them, have little explanatory power.     

Nitrogen regulation of the climate-carbon feedback: evidence from a long-term global change experiment

Modeling studies have shown that nitrogen (N) strongly regulates ecosystem responses and feedback to climate warming. However, it remains unclear what mechanisms underlie N regulation of ecosystem-climate interactions. To examine N regulation of ecosystem feedback to climate change, we have conducted a warming and clipping experiment since November 1999 in a tallgrass prairie of the Great Plains, USA. Infrared heaters were used to elevate soil temperature by an average of 1.96 degrees C at a depth of 2.5 cm from 2000 to 2008. Yearly biomass clipping mimicked hay or biofuel feedstock harvest. We measured carbon (C) and N concentrations, estimated their content and C:N ratio in plant, root, litter, and soil pools. Warming significantly stimulated C storage in aboveground plant, root, and litter pools by 17%, 38%, and 29%, respectively, averaged over the nine years (all P < 0.05) but did not change soil C content or N content in any pool. Plant C:N ratio and nitrogen use efficiency increased in the warmed plots compared to the control plots, resulting primarily from increased dominance of C4 plants in the community. Clipping significantly decreased C and N storage in plant and litter pools (all P < 0.05) but did not have interactive effects with warming on either C or N pools over the nine years. Our results suggest that increased ecosystem nitrogen use efficiency via a shift in species composition toward C4 dominance rather than plant N uptake is a key mechanism underlying warming stimulation of plant biomass growth.     

The "cultural filter", human transport of mussel shell, and the applied potential of zooarchaeological data

Large assemblages of animal bones and/or shells from archaeological sites can provide data valuable for modern conservation efforts, e.g., by providing accurate historical baselines for species reintroductions or habitat restoration. Such data are underused by natural scientists, partly due to assumptions that archaeological materials are too biased by prehistoric human actions (the so-called "cultural filter") to accurately reflect past biotic communities. In order to address many paleobiological, archaeological, or applied research questions, data on past species, communities, and populations must first be demonstrated to be representative at the appropriate level. We discuss different ways in which one kind of cultural bias, human transport of specimens, can be tested at different scales, using freshwater mussel shells from prehistoric sites in the Tombigbee River basin of Mississippi and Alabama to show how representativeness of samples can be assessed.     

Recovery of mercury-contaminated fisheries

In this paper, we synthesize available information on the links between changes in ecosystem loading of inorganic mercury (Hg) and levels of methylmercury (MeHg) in fish. Although it is widely hypothesized that increased Hg load to aquatic ecosystems leads to increases in MeHg in fish, there is limited quantitative data to test this hypothesis. Here we examine the available evidence from a range of sources: studies of ecosystems contaminated by industrial discharges, observations of fish MeHg responses to changes in atmospheric load, studies over space and environmental gradients, and experimental manipulations. A summary of the current understanding of the main processes involved in the transport and transformation from Hg load to MeHg in fish is provided. The role of Hg loading is discussed in context with other factors affecting Hg cycling and bioaccumulation in relation to timing and magnitude of response in fish MeHg. The main conclusion drawn is that changes in Hg loading (increase or decrease) will yield a response in fish MeHg but that the timing and magnitude of the response will vary depending of ecosystem-specific variables and the form of the Hg loaded.     

Comparative acute freshwater hazard assessment and preliminary PNEC development for eight fluorinated acids

Short-term 48, 72 and 96-h aquatic toxicity tests were conducted to evaluate the acute toxicity of eight fluorinated acids to the cladoceran, Daphnia magna, the green alga, Pseudokirchneriella subcapitata, and the rainbow trout, Oncorhynchus mykiss or the fathead minnow, Pimephales promelas. The eight fluorinated acids studied were tridecafluorohexyl ethanoic acid (6:2 FTCA), heptadecafluorooctyl ethanoic acid (8:2 FTCA), 2H-dodecafluoro-2-octenoic acid (6:2 FTUCA), 2H-hexadecafluoro-2-decenoic acid (8:2 FTUCA), 2H,2H,3H,3H-undecafluoro octanoic acid (5:3 acid), 2H,2H,3H,3H-pentadecafluoro decanoic acid (7:3 acid), n-perfluoropentanoic acid (PFPeA) and n-perfluorodecanoic acid (PFDA). The results of the acute toxicity tests conducted during this study suggest that the polyfluorinated acids, 8:2 FTCA, 8:2 FTUCA, 6:2 FTCA, 6:2 FTUCA, 7:3 acid and 5:3 acid, and the perfluorinated acids PFPeA and PFDA, are generally of low to medium concern based on evaluation of their acute freshwater toxicity (EC/LC50s typically between 1 and >100 mg L⁻¹) using the USEPA TSCA aquatic toxicity evaluation paradigm. For the polyfluorinated acids, aquatic toxicity generally decreased as the number of fluorinated carbons decreased and as the overall carbon chain length decreased from 12 to 8. Acute aquatic toxicity of the 5 and 10 carbon perfluorocarboxylic acids (EC/LC50s between 10.6 and >100 mg L⁻¹) was greater or similar to that of the 6-9 carbon perfluorocarboxylic acids (EC/LC50s > 96.5 mg L⁻¹). This study also provides the first report of the acute aquatic toxicity of the 5:3 acid (EC/LC50s of 22.5 to >103 mg L⁻¹) which demonstrated less aquatic toxicity than the 7:3 acid (EC/LC50s of 0.4-32 mg L⁻¹). The cladoceran, D. magna and the green alga, P. subcapitata had generally similar EC50 values for a given substance while fish were typically equally or less sensitive with the exception that PFPeA was most toxic to fish. Predicted no-effect concentrations (PNECs) were estimated using approaches consistent with REACH guidance and when compared with available environmental concentrations, these PNECs suggest that the fluorinated acids tested pose little risk for aquatic organisms.