Molecular Detection of Adenoviruses in Lakes and Rivers of Goiânia,Goiás,Brazil

Adenoviruses are a highly important public health issue, since they are among the most persistent and ubiquitous viruses present in water and associated with a variety of clinical manifestations. The aim of this study was to use molecular techniques for the detection of adenovirus in public and recreational water supplies in Goiania, Brazil. From December 2007 to November 2008, 54 water samples were collected in 5 different sites in 2 lakes and 2 rivers of the city. The samples were filtered in a positively charged nylon membrane, and the DNA was extracted using the phenol–chloroform–isoamyl alcohol method. Semi-nested PCR was used to detect adenovirus DNA, and sequence analysis of the semi-nested PCR products was performed to identify the recovered viruses. Adenovirus DNA was detected in 43% (24 of 54) of samples collected. Considering all examined sites, MP1 presented the highest occurrence of adenovirus (6 positive from 10 collected samples), followed by MP2 (3 positive from 6 collected samples), JL (10 positive from 21 collected samples), VB (3 positive from 9 collected samples), and BB (2 positive from 8 collected samples), respectively. The methodology employed proved to be feasible, fast, low-cost, and suitable to be used as screening approach on adenovirus detection in water for public sanitation companies.     

Basis for a national strategy for integrated coastal zone management—in Portugal

This paper includes the proposals made in the report “Basis for a National Strategy for Coastal Zone Management” prepared for the Portuguese Ministry of Environment, Territorial Planning and Regional Development. The final version of that report was presented in June 2006. This paper describes a theme framework followed by a discussion of concepts. Nine Primary Principles, eight Principal Objectives, and 37 Strategic Options for an Integrated Coastal Zone Management are then presented. These Strategic Options are set hierarchically according to their sequential priority, identifying the dominant types of Associated Measures. The analysis of these arrives at a set of Structural Measures, which interlink and aggregate various actions and propose a new method of integrated management for the coastal zone, which includes the “Legal Basis of Coastal Zone”; the Organization System; the Action Plan and Monitoring.     

Breakwater control system and structural analysis: physical and numerical modelling (Port of Funchal,Madeira Island,Portugal)

The objective of this work was to analyze the behavior of the Funchal Port (Madeira Island, Portugal) breakwater using physical and numerical models in order to analyze the evolution of the underwater layers, combining information between the two models as well as simulating storm conditions and atypical docking/undocking impacts of cruise ships. Regarding the physical model using a wave generation system, the data collected and the test conditions were addressed considering different scenarios (return periods of 20, 50 and 100 years). It was found that for return periods of 20 years, the behavior of the infrastructure as a whole was stable. For return periods of 50 years, wave overtopping became more frequent and intense, and began to impact the superstructure. For the 100-year return period the behavior of the infrastructure was found to be unstable, with persistent wave overtopping. The morphology of the submerged layers also changed. The main objectives of the numerical model approach were to estimate the natural frequencies of vibration (when materials suffer a considerable modification, a change in their frequencies of vibration can be detected), and to calculate the expected displacements corresponding to cruise ship docking processes (agitation in a protected area) and the associated maximum maritime (agitation in an exposed area) forces. The maximum displacements obtained for the two cases were about 0.03 m, which is a high value. Considering the results obtained from this work, the Port authorities decided to maintain the monitoring program and perform an underwater video inspection.     

Trace elements in fish and oysters from Sepetiba Bay (Rio de Janeiro – Brazil) determined by total reflection X-ray fluorescence using synchrotron radiation

Trace elements were determined in fish and oysters from Sepetiba Bay, Brazil, by total reflection Xray fluorescence using synchrotron radiation (SRTXRF). Cr, Mn, Fe, Ni, Cu, Zn and Se were determined in fish muscles and organs and in oyster soft tissue. SRTXRF was shown to be a good tool for the analysis of trace elements from biological tissue samples. Overall, the levels of the analysed metals were higher in oysters than in the fish samples. Metals were not uniformly distributed throughout the body of the analysed fish. The detected concentrations of Cr, Zn and Se were very high in some samples, surpassing the maximum limits established by Brazilian legislation.     

Use of the digestive gland of the oyster Crassostrea rhizophorae (Guilding, 1828) as a bioindicator of Zn,Cd and Cu contamination in estuarine sediments (south-east Brazil)

This study demonstrates the accumulation of Zn, Cd and Cu in the digestive gland of the oyster Crassostrea rhizophorae in response to the contamination of sediments and discusses the potential use of this specific organ in monitoring metal contamination in tropical areas. Sediment and oyster samples were collected from coastal Rio de Janeiro sites with different levels of human impact: Sepetiba Bay, Guanabara Bay and the Paraty coast. Metal concentrations were measured using inductively coupled plasma optical emission spectrometry (ICP OES). Significant statistical differences (p<0.001; p<0.05) were observed for Zn and Cd concentrations in the digestive gland; the highest Zn concentrations were found at Sepetiba, followed by Guanabara and Paraty. The highest digestive gland Cd concentrations were found at Paraty, followed by Sepetiba and Guanabara. These concentrations were proportional to those found in the sediments. There was no significant difference (p>0.05) in Cu among the sampling sites. The highest digestive-gland Cu concentration was also found at Sepetiba, followed by Guanabara. The biosediment accumulation factor indicated a gradient of sediment contamination for Zn and Cd. The digestive gland of C. rhizophorae can be a potential indicator of trace metal contamination in sediments from tropical estuarine environments.     

Bacterial Degradation of Vegetable Oils

Following initial experiments presented elsewhere (2IOPS), the bacterial degradation of two vegetable oils was investigated in some detail. the number of aerobic and anaerobic heterotrophic bacteria, oil degrading and sulphate reducing bacteria were quantified during simulated spills on a salt marsh. the sediment fatty acid composition was also studied using GC-MS analysis. Degradation of linseed and sunflower oils was concomitant with an increase in the numbers of aerobic and anaerobic bacteria. Fatty acids analysis revealed preferential degradation of the principal components of the oils (18:3ω3 for linseed oil and 18:2ω6 for sunflower oil). the presence of several isomers of the usual polyunsaturated fatty acids was also detected. the identification of some of these new fatty acids has been carried out. Possible pathways of degradation of these vegetable oils are suggested.     

Chronic mixture toxicity study of Clophen A60 and diethyl phthalate in male rats

Chemical mixtures are an important area of research as individuals are exposed to low doses of persistent chemical agents known as environmental pollutants throughout their life time. Polychlorinated biphenyls (PCBs) and diethyl phthalate (DEP) are ubiquitous environmental pollutants that could be present in the same environmental compartment; hence organisms may get simultaneously exposed to both. Therefore, a study was undertaken to see whether PCB and DEP together show interactive chronic mixture toxicity in male Wistar rats. Healthy male Wistar rats weighing 70–100?g were randomly assigned to four groups of six each. Control rats were fed on normal diet and water ad libitum. Oil control rats were maintained on a normal diet mixed with corn oil. Rats were given Clophen A60 (PCB) and DEP dissolved individually in corn oil mixed with the diet at 50?mg?kg^?1 of the diet/day, as well as a mixture in corn oil mixed with the diet both at 50?mg?kg^?1 of the diet/day. After 150 days of treatment animals were sacrificed and enzymes and other biochemical parameters in the serum and liver were assessed. Liver weight to body weight ratio showed a significant increase in Clophen A60 and in Clophen A60?+?DEP treated rats. In the DEP, Clophen A60 and Clophen A60?+?DEP treated groups there was significant increase in liver and serum alanine aminotransferase (ALT) and acid phosphatase (ACP) activity. Aspartate aminotransferase (AST) was significantly increased in the liver and serum of DEP treated rats only. Cholesterol levels were significantly increased only in the serum and the liver of DEP treated rats. Triglyceride levels were significantly increased in the serum of treated rats and only in the liver of Clophen A60 and Clophen A60?+?DEP treated rats. Liver glycogen levels were significantly increased in DEP and Clophen A60?+?DEP treated rats. In all treated animals, there was a significant decrease in liver glutathione reductase (GR). Histology of liver showed severe vacuolations, fatty degeneration and loss of hepatic architecture in Clophen A60 and Clophen A60?+?DEP treated rats, whereas in DEP treated rats only loss of hepatic architecture and granular deposits in the hepatocytes was predominant with mild vacuolations of centrilobular and periportal area. It is evident from this study of mixture toxicity of Clophen A60 and DEP that there is no significantly enhanced toxicity due to the interaction of these two compounds. On the other hand, to some extent there is alleviation in toxicity as evidenced by enzyme ACP and AST levels in the liver. The hepatocellular damage and biliary congestion caused by these two compounds, which can be confirmed by significantly increased liver weights and elevated serum and liver enzyme levels as well as histology, was almost the same between individual and mixture treated group.     

Heavy metal pollution in soil and plants at bone char site

This study determined the heavy metal concentration in soil and plants at a bone char site in Umuahia, Nigeria. Soil and plant samples collected in a randomized complete block design (RCBD) were analyzed for zinc (Zn), lead (Pb), cadmium (Cd), nickel (Ni), and arsenic (As). The concentration of metals in soil and plants in the vicinity of the bone char site are as follows: Zn (172?mg?kg^?1) and Ni (0.62?mg?kg^?1) in soil were highest at site P₃, Pb (2.37?mg?kg^?1) and As (0.08?mg?kg^?1) at site P₁, and Cd (18.30?mg?kg^?1) at site P₂. In plants, the concentrations of Zn (41.17?mg?kg^?1) and Cd (3?mg?kg^?1) were highest in Albizia ferruginea, Ni in Dialium guineense (0.09?mg?kg^?1), while Pb was in D. guineense (0.08?mg?kg^?1) and Spathodea companulata (0.06?mg?kg^?1). The levels of Zn, Cd, Pb, Ni, and As in soil ranged from 11.2 to 172, 2.68 to 18.2, 0.026 to 2.37, 0.33 to 0.62, and 0.02 to 0.08?mg?kg^?1, respectively. In plants, the concentration of Zn, Cd, Pb, and Ni ranged from 2.01 to 41.17, 0.12 to 3, 0.02 to 0.08, and 0.03 to 0.09?mg?kg^?1, respectively. There were significant correlations between Zn and Cd, and Pb and As in soil. The high concentration of Cd in soil might affect soil productivity.     

How does the brown mussel Perna perna respond to environmental pollution? A review on pollution biomarkers

The brown mussel Perna perna (Linnaeus, 1758) is a valuable resource for aquaculture in tropical and subtropical coastal regions. It presents desirable characteristics for biomonitoring, including being sessile, widely distributed and abundant, and is a filter-feeder able to accumulate several classes of pollutants (e.g., metals, hydrocarbons, among others). Mussels’ biological responses to pollution exposure can be measured as biomarkers, which include alterations ranging from molecular to physiological levels, to estimate the degree of environmental contamination and its effects on biota. This full review compiles two decades (2000–2020) of literature concerning biological effects on P. perna mussel caused by environmental pollutants (i.e., metals, hydrocarbons, and emerging pollutants), considering environmental and farm-based biomonitoring. Biochemical markers related to mussels’ oxidative status were efficient for the biomonitoring of metals (i.e., antioxidant enzymes associated with oxidative damage in biomolecules). Genotoxicity and cytotoxicity indicators (i.e., comet, micronucleus, and neutral red assays) provided a depiction of hydrocarbon contamination. The neutral red assay gave a time-concentration cytotoxic response to a wide range of pollutants, including emerging pollutants (e.g., pharmaceuticals and biocides) and hydrocarbons. Perna perna hemocyte parameters provided a useful approach for biocide biomonitoring. This paper summarizes useful biomarkers from molecular to physiological levels in this mussel species used to identify and quantify the degree of coastal pollution. An integrated biomarker analysis may provide a way to overcome possible biomarker variations and assess multi-polluted sites. Nevertheless, it is necessary to investigate biomarker variations according to natural factors (e.g., season and gonad maturation stage) to standardize them for trustworthy biomonitoring.     

A Water Quality Index Applied to an International Shared River Basin: The Case of the Douro River

A Water Quality Index (WQI) is a numeric expression used to evaluate the quality of a given water body and to be easily understood by managers. In this study, a modified nine-parameter Scottish WQI was used to assess the monthly water quality of the Douro River during a 10-year period (1992–2001), scaled from zero (lowest) to 100% (highest). The 98,000 km² of the Douro River international watershed is the largest in the Iberian Peninsula, split between upstream Spain (80%) and downstream Portugal (20%). Three locations were surveyed: at the Portuguese–Spanish border, 350 km from the river mouth; 180 km from the mouth, where the river becomes exclusively Portuguese; and 21 km from the mouth. The water received by Portugal from Spain showed the poorest quality (WQI 47.3 ± 0.7%); quality increased steadily downstream, up to 61.7 ± 0.7%. In general, the water quality at all three sites was medium to poor. Seasonally, water quality decreased from winter to summer, but no statistical relationship between quality and discharge rate could be established. Depending on the location, different parameters were responsible for the episodic decline of quality: high conductivity and low oxygen content in the uppermost reservoir, and fecal coliform contamination downstream. This study shows the need to enforce the existing international bilateral agreements and to implement the European Water Quality Directive in order to improve the water quantity and quality received by the downstream country of a shared watershed, especially because two million inhabitants use the water from the last river location as their only source of drinking water.