Can nuclear aquatic environmental DNA be a genetic marker for the accurate estimation of species abundance?

The Science of Nature - We present the first study that compares phenological variation in parasite load and inflammatory response in a lizard with asynchronous male and female gonadal cycles....     

Genetic structure of green turtle (Chelonia mydas) peripheral populations nesting in the northwestern Pacific rookeries: evidence for northern refugia and postglacial colonization

Several green turtle (Chelonia mydas) nesting populations have been reported in the northwestern Pacific region, the northernmost limit of its distribution range. However, the population history in this region as a whole is not well understood. To clarify how the green turtle nesting populations have evolved in the northwestern Pacific region, the genetic composition of mitochondrial DNA control region sequences in the northwestern Pacific was compared with that of the other Pacific populations. We analyzed 302 samples from the northwestern Pacific rookeries, including 78 newly collected samples from rookeries in the Ryukyu Archipelago, Japan (from 24.27°N, 123.76°E to 28.45°N, 129.61°E). Our results revealed that the northwestern Pacific populations consisted of one highly endemic lineage (Clade IV) in the northwestern Pacific rookeries and two other lineages (Clades I and V) which were widely observed in other Pacific populations. We concluded that the highly endemic lineage indicated that a refugial population existed in this region during the Last Glacial Maximum, and the other two lineages indicated that colonization from populations at lower latitudes occurred during interglacial periods. The green turtle nesting populations in the present periphery of their distribution range had been thought to have their origin in colonization from lower latitudes, which served as refugia during glacial periods. However, the present results indicated that the northwestern Pacific peripheral populations have been maintained on the evolutionary timescale of this species and should be treated as long-term conservation resources.     

Determination and potential importance of diterpene (kaur-16-ene) emitted from dominant coniferous trees in Japan

Reactive volatile organic compounds (VOCs) are known to affect atmospheric chemistry. Biogenic VOCs (BVOCs) have a significant impact on regional air quality due to their large emission rates and high reactivities. Diterpenes (most particularly, kaur-16-ene) were detected in all of the 205 enclosure air samples collected over multiple seasons at two different sites from Cryptomeria japonica and Chamaecyparis obtusa trees, the dominant coniferous trees in Japan,. The emission rate of kaur-16-ene, was determined to be from 0.01 to 7.1 μg dwg⁻¹ h⁻¹ (average: 0.61 μg dwg⁻¹ h⁻¹) employing branch enclosure measurements using adsorbent sampling followed by solid phase-liquid extraction techniques. The emission rate was comparable to that of monoterpenes, which is known major BVOC emissions, collected from the same branches. In addition, total emission of kaur-16-ene at 30 °C was estimated to exceed that of total anthropogenic VOC emissions.     

Causes of decreased reference evapotranspiration and pan evaporation in the Jinghe River catchment, northern China

This study focused on the changes of reference evapotranspiration (ET₀) and pan evaporation (ET_pan) to study the impacts of climate change on the hydrological cycle in the Jinghe River catchment. Based on the Penman–Monteith equation, the ET₀ was calculated. The temporal trend and spatial distribution of ET₀ and E_pan measured with a 20-cm pan were examined at the 14 stations during 1957–2005. The effects of meteorological factors on the variation of ET₀ were determined by analyzing the trends in themselves with comparison between original climate and detrended climate scenarios and then their sensitivity to ET₀. Both the ET₀ and E_pan showed remarkable decreasing trends from 1957 to 2005 and their decreasing rate was 40.9 and 17.7 mm per 10 years, respectively. Trend analysis of meteorological factors exhibited that the reduction in ET₀ and ET_pan was principally caused by both significant decreases in wind speed and sunshine hours. Furthermore, the decreasing trend of ET₀ was mainly dominated by the significant decrease in wind speed with high sensitivity, to a less extent, by the decrease in net radiation. Although relative humidity is one of the most sensitive variables, its effect on ET₀ was negligible because of its temporal constancy. The contribution of wind speed reduction to decreased ET₀ has increased from 50 to 76.1%, but net radiation, by contrast, decreased from 50 to 23.9%.     

Fourier transform infrared and fluorescence spectral features of organic matter in conventional and organic dairy manure

Organic dairy production has exhibited potential for growth in the United States dairy sector. However, little information is available on whether there is any difference in manure composition and quality between organic (OD) and conventional (CD) dairy manure even though the composition and quality are important parameters with respect to availability, utilization, and cycling of manure nutrients and environmental impact evaluation. We comparatively characterized whole and water-extracted materials of 15 OD and seven CD dairy manure samples by Fourier transform infrared (FT-IR) and fluorescence spectroscopies. Fourier transform infrared features of manure organic matter varied mainly in the 1650 to 1550 cm range, reflecting the presence of different N compounds in these manure samples. Fluorescence data revealed five fluorophore components present in the water-extracted organic matter from the manures. We found no clearly distinct value ranges in whole and water-extractable organic matter between the two types of dairy manure with respect to C and N contents and FT-IR and fluorescence spectral features. However, based on the average values, we observed general pattern differences on the effect of organic farming on the manure composition: OD contained less soluble C and N compounds on dry weight basis but more hydrophobic aliphatic groups in whole manure. The soluble organic matter in OD samples contained more stable humic- and lignin-related components and less amino/protein N-related components based on their spectroscopic features. These differences might be attributed to more forage feedstuffs in organic dairy farming management and more protein additives in conventional dairy feedstuffs. Information from this work may be useful in aiding organic dairy farmers in making manure management decisions.     

Ring-Opening Polymerization of Cyclic Esters onto Liquefied Biomass

Ring-opening polymerization of cyclic esters (-caprolactone, -valerolactone, and l-lactide) onto liquefied biomass (LB) was conducted to obtain the polyester-type polyol and to regulate the characteristics of LB. IR and ¹H-NMR spectra of the obtained polyol showed that the polymerization was successfully conducted in the presence of acid catalyst, which is used in liquefaction. The molecular weight (M_w), hydroxyl value, and viscosity were controllable by changing the reaction conditions. Polyester-type polyurethane foams with a wide range of properties were prepared from the obtained polyol with the appropriate combinations of foaming agents.     

Effect of Tinospora cordifolia on the reduction of ultraviolet radiation‐induced cytotoxicity and DNA damage in PC12 cells

The safety of Tinospora cordifolia and its potential to protect against ultraviolet radiation‐induced cytotoxicity and DNA damage in PC12 cells were investigated. To evaluate the safety of T. cordifolia, cell viability and agarose gel electrophoresis were carried out using PC12 cells treated with 0 to 100 μg mL^?1 of methanol extract of T. cordifolia. T. cordifolia extracts did not show cytotoxicity ranging 0 to 100 μg mL^?1. In addition, T. cordifolia extracts significantly increased cell viability at 1 ng, 10 ng and 1 μg mL^?1 concentrations in serum‐deprived medium compared to control. To confirm the protective role against UV‐induced damage, PC12 cells alone or in the presence of 10 ng, 100 ng, or 1 μg mL^?1 of T. cordifolia extract were exposed to 250, 270 and 290 nm of UV radiation, which corresponded to doses of 120, 150 and 300 mJ cm^?2, respectively. Treatment with T. cordifolia extracts significantly increased the cell survival rate irradiated at 290 nm. In addition, T. cordifolia extracts significantly reduced cyclobutane pyrimidine dimer formation induced by UV irradiation at all wavelengths. In conclusion, T. cordifolia is not toxic and safe for cells. Our findings can support its application as phototherapy in the medical sector.     

Reduction of hazardous elements contained in sewage sludge incineration ash

Research and experimental studies were carried out in relation to reduction of hazardous elements contained in sewage sludge incineration ash. A questionnaire survey was conducted in 69 Japanese municipalities with sewage sludge incineration facilities. Selenium content in bag filter ash and ceramic filter ash was relatively higher than that in ash of cyclone and electrostatic precipitators. It was assumed that selenium vaporized in the furnace was due to adsorb in the fly ash on filter when passing through the low-temperature filter. To reduce high boiling point heavy metals in the ash, sewage sludge and incineration ash were heated up using a small muffle furnace. As the result, the chrome and nickel contents were reduced. A decrease in the surface area of ash and the reduction of elements occurred at the same time in sewage sludge and incineration ashes tested in this study.     

Formation of chloroform and carbon tetrachloride in foods treated with sodium hypochlorite

The formation of chloroform and carbon tetrachloride during the treatment of fresh vegetable homogenate with sodium hypochlorite was studied.When a n-hexane extract of the reaction mixture of fresh vegetables and sodium hypochlorite was analysed by gas chromatography, chloroform and carbon tetrachloride were detected, and many unidentified peaks were also observed. The formation conditions of chloroform and carbon tetrachloride were studied. The mechanism of chloroform formation may be different from that of carbon tetrachloride according to the study of pH on the formation of both compounds. The formation of chloroform is much greater than that of carbon tetrachoride.