Development of community of practice to support quantitative risk assessment for synthetic biology products: contaminant bioremediation and invasive carp control as cases

Synthetic biology has the potential for a broad array of applications. However, realization of this potential is challenged by the paucity of relevant data for conventional risk assessment protocols, a limitation due to to the relative nascence of the field, as well as the poorly characterized and prioritized hazard, exposure, and dose–response considerations associated with the development and use of synthetic biology-derived organisms. Where quantitative risk assessment approaches are necessarily to fulfill regulatory requirements for review of products containing genetically modified organisms, this paper reviews one potential avenue for early-stage quantitative risk assessment for biosafety considerations of synthetic biology organism deployment into the environment. Building from discussion from a March 2018 US Army Engineer Research and Development Center workshop on developing such quantitative risk assessment for synthetic biology, this paper reviews the findings and discussion of workshop participants. This paper concludes that, while synthetic biology risk assessment and governance will continue to refine and develop in the coming years, a quantitative framework that builds from existing practice is one potentially beneficial option for risk assessors that must contend with the technology’s limited hazard characterization or exposure assessment considerations in the near term.     

Zoning and the Tasmanian commercial rock lobster fishery

In this paper, the island of Tasmania is considered as a government jurisdiction. Management at this scale can conflict with sustainability in local environments. The case used to make this argument is the Tasmanian commercial rock lobster fishery. Within this fishery, Tasmania-wide management paradoxically intensifies differences at the same time as it effaces them. These differences contrast with Tasmania-wide management claims regarding sustainability. Actor–network theory is used to help approach these tensions. Zoning the fishery is put forward as a way to take into account differences to produce sustainable local outcomes.     

Complex habitat boosts scallop recruitment in a fully protected marine reserve

This study investigated the effects of a fully protected marine reserve on commercially valuable scallops and benthic habitats in Lamlash Bay, Isle of Arran, United Kingdom. Dive surveys found the abundance of juvenile scallops to be greater within the marine reserve than outside. A novel multivariate approach, based upon neural networks and generalised linear models, revealed the greater abundance of juveniles to be related to the greater presence of macroalgae and maerl within the reserve boundaries. This complex habitat appeared to have positively encouraged spat settlement. In contrast, the density of adult scallops did not differ between the two treatments, possibly due to the short duration of protection. However, the age, size and biomass of adult scallops were significantly greater within the reserve. Overall, this study suggests that the newly created marine reserve is already providing benefits which are flowing back to species targeted by fisheries, emphasising the importance of marine reserves in ecosystem-based management of fisheries.     

Book reviews

Sustainable Cities and Sustainable Development Sustainable Cities. G. Haughton &; C. Hunter, 1994, Jessica Kingsley/Regional Studies Association, London

Sustainable Cities in Europe. P. Nijkamp &; A. Perrels, 1994, Earthscan, London ISBN 185383, £12.95

Toward Sustainable Development Concepts, Methods and Policy. J. C. J. M. van den Bergh &; J. van der Straaten, 1994, Island Press, Washington, DC, ISBN 1 55963 3492, £30.00

Just Environments: intergenerational, international and interspecies issues. David E. Cooper &; Joy A. Palmer (Eds), 1995, London, Routledge, ISBN 0 415–10336–3, pp. 199, index, £11.99

First Steps: Local Agenda 21 in practice. Stella Whittaker (Ed.), 1995, London, HMSO, 251 pp. ISBN 0 11 701871 6, £29.95

Beyond the Car: essays on the auto culture. Sue Zielinski &; Gordon Laird (Eds), 1995, Toronto, Steel Rail Publishing/Transportation Options, 191 pp. ISBN 0 88791 042 4, pbk, C$ 19.95, US$15.95     

Urban Waterfront Regeneration in the Mersey Basin,North West England

The economic decline of traditional dockland areas has released considerable areas of land for redevelopment, much of which is close to the heart of city centres. The property development industry has capitalized upon these assets to the extent that port-related redevelopmentis a common feature throughout North America and Europe. This paper explores the experience of the Mersey Basin in North West England which, under the Mersey Basin Campaign initiative, has sought to explicitly connect improvements in water quality to economic regeneration. A small survey of commercial property valuers was used to explore this relationship and revealed the importance of water in the property development process, through potential increases in value and an enhancement of the marketability of property adjacent to water. Equally, improved water quality is revealed as an important precursor to waterside economic regeneration. Here, investment must, as with the preparation of derelict and contaminated land for redevelopment, be regarded as a public good, nurturing good water quality as an asset for the benefit of future generations and as a part of realizing the full potential of waterfront regeneration.     

Ten Years On: An Empirical Analysis of UK Environmental Statement Submissions since the Implementation of Directive 85/337/EEC

Regulations to implement Directive 85/337/EEC have been in operation in the UK for over 10 years. Implementation of the amended Directive (97/11/EC) in March 1999 marked the start of a new phase in environmental impact assessment (EIA), and so a review of the impact of the original Directive upon EIA activity is timely. This paper examines the implementation of the Directive in the UK through an empirical analysis of the publication of environmental statements (ESs) between July 1988 and April 1998. ES submissions are analysed under Annexes I and II of the Directive and under the main UK regulations, and then development control decision outcomes are considered. The implications of selected legislation and policy initiatives for ES submissions are then investigated in detail for four types of project. The Directive has been a major force in stimulating the development and growth of EIA in the UK, although the interaction of policies and legislation (environmental and otherwise) can exert an important influence upon trends in ES submissions.     

Book reviews

Sustainable Cities and Sustainable Development Sustainable Cities. G. Haughton & C. Hunter, 1994, Jessica Kingsley/Regional Studies Association, London

Sustainable Cities in Europe. P. Nijkamp & A. Perrels, 1994, Earthscan, London ISBN 185383, £12.95

Toward Sustainable Development Concepts, Methods and Policy. J. C. J. M. van den Bergh & J. van der Straaten, 1994, Island Press, Washington, DC, ISBN 1 55963 3492, £30.00

Just Environments: intergenerational, international and interspecies issues. David E. Cooper & Joy A. Palmer (Eds), 1995, London, Routledge, ISBN 0 415-10336-3, pp. 199, index, £11.99

First Steps: Local Agenda 21 in practice. Stella Whittaker (Ed.), 1995, London, HMSO, 251 pp. ISBN 0 11 701871 6, £29.95

Beyond the Car: essays on the auto culture. Sue Zielinski & Gordon Laird (Eds), 1995, Toronto, Steel Rail Publishing/Transportation Options, 191 pp. ISBN 0 88791 042 4, pbk, C$ 19.95, US$15.95     

Stormflow hydrochemistry of a river draining an abandoned metal mine: the Afon Twymyn, central Wales

Contaminated drainage from metal mines is a serious water-quality problem facing nations that exploit metal mineral resources. Measurements of river hydrochemistry during baseflow are common at mine sites, whilst detailed hydrochemical information regarding stormflow is limited and often confined to a single event. This study investigates the seasonal evolution of stormflow hydrochemistry at an abandoned metal mine in central Wales, UK, and the possible sources and mechanisms of metal release. Significant flushing of metals was observed during stormflow events, resulting in concentrations that severely exceeded water-quality guidelines. The relationship between metal concentrations and river discharge suggests dissolution of efflorescent metal sulphates on the surface of the mine spoil as the principal source of the contamination. High fluxes of Pb during stormflows are linked to extended periods of dry weather prior to storm events that produced water table drawdown and encouraged oxidation of Pb sulphide in the mine spoil. However, some Pb flushing also occurred following wet antecedent conditions. It is suggested that Fe oxide reduction in mine spoil and translatory flows involving metal-rich pore waters results in flushing during wetter periods. Detailed measurements of stormflow hydrochemistry at mine sites are essential for accurate forecasting of long-term trends in metals flux to understand metal sources and mechanisms of release, to assess potential risks to water quality and instream ecology, and to gauge the potential effectiveness of remediation. In order to protect riverine and riparian ecosystems, it is suggested that routine monitoring of stormflows becomes part of catchment management in mining-impacted regions.     

Semi-automatic reduction and upscaling of large models: A farm management example

Research questions at the regional, national and global scales frequently require the upscaling of existing models. At large scales, simple model aggregation may have a prohibitive computational cost and lead to over-detailed problem representation. Methods that guide model simplification and revision have the potential to support the choice of the appropriate level of detail or heterogeneity within upscaled models. Efficient upscaling will retain only the heterogeneity that contributes to accurate aggregated results. This approach to model revision is challenging, because automatic generation of alternative models is difficult and the set of possible revised models is very large. In the case where simplification alone is considered, there are at least n²−1 possible simplified models where n is the number of model variables. Even with the availability of High Performance Computing, it is not possible to evaluate every possible simplified model if the number of model variables is greater than roughly 35. To address these issues, we propose a method that extends an existing procedure for simplifying and aggregating mechanistic models based on replacing model variables with constants. The method generates simplified models by selectively aggregating existing model variables, retaining existing model structure while reducing the size of the set of possible models and ordering them into a search tree. The tree is then searched selectively. We illustrate the method using a catchment scale optimization model with c. 50,000 variables (Farm-adapt) in the context of adaptation to climatic change. The method was successful in identifying redundant model variables and an adequate model 10% smaller than the original model. We discuss how the procedure can be extended to other large models and compare the method to those proposed by others. We conclude by urging model developers to regard their models as a starting point and to consider the need for alternative models during model development.     

Leading from the front? Social networks in navigating groups

In many group-living animals, leadership by only a fraction of the group members can be important for group navigation. It has been shown that subgroups of informed individuals can steer the remainder of the group without direct communication, resolving conflicts of interest through individual-to-individual interactions. We present a model for the navigation of collectively moving groups that includes preferential interactions between individuals as a way of imposing social network structures, known to be present in many species. We show that effective leadership can occur when leaders do not occupy frontal spatial positions and when navigation tendency is appropriately balanced with social position. Our model also shows that small minorities can dominate movement decisions if they have navigational knowledge combined with influential social network positions. Our findings highlight the mechanistic importance of social networks for the movement decisions of animal groups. We discuss the implications of our research for interpreting empirical observations.