The basics of acidification: baseline variability of pH on Australian coral reefs

Ocean acidification is one of the key threats facing coral reef ecosystems, but there are few estimates of spatial and temporal variability in pH among reef habitats. The present study documents levels of spatial variability in pH among coral reef habitats (9 to 10), among locations separated by 100’s km of latitude and between east (Great Barrier Reef, GBR) and west (Ningaloo Reef) coasts of Australia. Differences were found in pH between inshore and offshore waters along Ningaloo Reef (means 8.45, 8.53, respectively). Replicate assessments here ranged from 8.22 to 8.64. On the GBR, the range of values over all habitats and replicates was 0.39 pH units (7.98 to 8.37). There were minor but significant differences of 0.05 pH units between 5 consecutive days for habitats on average. Highest pH was recorded in filamentous algal beds maintained by the damselfish Dischistodus perspicillatus. Lowest pH was found in water extracted from sand-dwelling goby holes. While there were marked changes in pH over a 48-h sampling period among 4 habitats at Lizard Island (GBR), there was little evidence of a diel trend. Understanding how pH varies at scales that are relevant to organisms that live on shallow coral reefs is crucial for the design and interpretation of experiments that test the effects on organisms of the changes in water chemistry predicted to affect oceans in the future.     

Pyrosequencing reveals bacteria carried in different wind-eroded sediments

Little is known about the microbial communities carried in wind-eroded sediments from various soil types and land management systems. The novel technique of pyrosequencing promises to expand our understanding of the microbial diversity of soils and eroded sediments because it can sequence 10 to 100 times more DNA fragments than previous techniques, providing enhanced exploration into what microbes are being lost from soil due to wind erosion. Our study evaluated the bacterial diversity of two types of wind-eroded sediments collected from three different organic-rich soils in Michigan using a portable field wind tunnel. The wind-eroded sediments evaluated were a coarse sized fraction with 66% of particles >106 μm (coarse eroded sediment) and a finer eroded sediment with 72% of particles <106 μm. Our findings suggested that (i) bacteria carried in the coarser sediment and fine dust were effective fingerprints of the source soil, although their distribution may vary depending on the soil characteristics because certain bacteria may be more protected in soil surfaces than others; (ii) coarser wind-eroded sediment showed higher bacterial diversity than fine dust in two of the three soils evaluated; and (iii) certain bacteria were more predominant in fine dust (, , and ) than coarse sediment ( and ), revealing different locations and niches of bacteria in soil, which, depending on wind erosion processes, can have important implications on the soil sustainability and functioning. Infrared spectroscopy showed that wind erosion preferentially removes particular kinds of C from the soil that are lost via fine dust. Our study shows that eroded sediments remove the active labile organic soil particulates containing key microorganisms involved in soil biogeochemical processes, which can have a negative impact on the quality and functioning of the source soil.     

Rainfall Runoff Relationships for a Cloud Forest Watershed in Central America: Implications for Water Resource Engineering1

Caballero, Luis A., Alon Rimmer, Zachary M. Easton, and Tammo S. Steenhuis, 2012. Rainfall Runoff Relationships for a Cloud Forest Watershed in Central America: Implications for Water Resource Engineering. Journal of the American Water Resources Association (JAWRA) 48(5): 1022‐1031. DOI: 10.1111/j.1752‐1688.2012.00668.x Abstract: Understanding the basic relationships between rainfall and runoff is vital for effective management and utilization of scarce water resources. Especially, this is important in Central America with widespread potable water shortage during the dry months of the monsoon. Potential good water sources are cloud forests, but little information concerning its potential is available to water supply engineers. Our objective is to define rainfall‐runoff‐base flow relationships for a cloud forest catchment. Flumes were installed for measuring river flow in four subwatersheds in La Tigra National Park, Honduras. One of the four watersheds was a 636‐ha subwatershed (WS1) with 60% cloud forest coverage. Precipitation averaged 1,130 mm/yr over the entire basin. About half of the total rainfall became runoff for the cloud forest watershed whereas, for the adjacent undisturbed forested watershed, the total discharge was <20% of the amount of precipitation. Infiltration rates were generally greater than rainfall rates. Therefore, most rainfall infiltrated into the soil, especially in the upper, steep, and well‐drained portions of the watershed. Direct runoff was generated from saturated areas near the river and exposed bedrock. This research provides compelling evidence that base flow is the primary contributor to streamflow during both wet and dry seasons in cloud forest catchments. Protecting these flow processes over time is critical for the sustained provision of potable water.     

Incorporating Variable Source Area Hydrology into a Spatially Distributed Direct Runoff Model1

Buchanan, Brian, Zachary M. Easton, Rebecca Schneider, and M. Todd Walter, 2011. Incorporating Variable Source Area Hydrology Into a Spatially Distributed Direct Runoff Model. Journal of the American Water Resources Association (JAWRA) 48(1): 43‐60. DOI: 10.1111/j.1752‐1688.2011.00594.x Abstract: Few hydrologic models simulate both variable source area (VSA) hydrology, and runoff‐routing at high enough spatial resolutions to capture fine‐scale hydrologic pathways connecting VSA to the stream network. This paper describes a geographic information system‐based operational model that simulates the spatio‐temporal dynamics of VSA runoff generation and distributed runoff‐routing, including through complex artificial drainage networks. The model combines the Natural Resource Conservation Service’s Curve Number (CN) equation for estimating storm runoff with the topographic index concept for predicting the locations of VSA and a runoff‐routing algorithm into a new spatially distributed direct hydrograph (SDDH) model (SDDH‐VSA). Using a small agricultural watershed in central New York, SDDH‐VSA results were compared to those from a SDDH model using the traditional land use assumptions for the CN (SDDH‐CN). The SDDH‐VSA model generally agreed better with observed discharge than the SDDH‐CN model (average, Nash‐Sutcliffe efficiency of 0.69 vs. 0.58, respectively) and resulted in more realistic spatial patterns of runoff‐generating areas. The SDDH approach did not correctly capture the timing of runoff from small storms in dry periods. Despite this type of limitation, SDDH‐VSA extends the applicability of the SDDH technique to VSA conditions, providing a basis for new tools to help identify critical management areas and assess water quality risks due to landscape alterations.     

Mobility of dimethoate residues from spring broccoli field

Dimethoate [O, O-dimethyl-S-(N-methylcarbamoyl-methyl) phosphorodithioate] is a broad-spectrum systemic insecticide currently used worldwide and on many vegetables in Kentucky. Dimethoate is a hydrophilic compound (log K_OW = 0.7) and has the potential of offsite movement from the application site into runoff and infiltration water. The dissipation patterns of dimethoate residues were studied on spring broccoli leaves and heads under field conditions. Following foliar application of Dimethoate 4E on broccoli foliage at the rate of 0.47 L acre^?1, dimethoate residues were monitored in soil, runoff water collected down the land slope, and in infiltration water collected from the vadose zone. The study was conducted on a Lowell silty loam soil (pH 6.9) planted with broccoli under three soil management practices: (i) soil mixed with municipal sewage sludge, (ii) soil mixed with yard waste compost, and (iii) no-mulch rototilled bare soil. The main objective of this investigation was to study the effect of mixing native soil with municipal sewage sludge or yard waste compost, having considerable amounts of organic matter, on off-site movement of dimethoate residues into runoff and infiltration water following spring rainfall. The initial deposits of dimethoate were 6.2 and 21.4 μ g g^?1 on broccoli heads and leaves, respectively. These residues dissipated rapidly and fell below the maximum residue limit of 2 μ g g^?1 on the heads and leaves after 10 and 14 d, respectively, with half-lives of 5.7 d on broccoli heads and 3.9 d on the leaves. Dimethoate residues detected in top 15 cm of soil (due to droplet drift and wash off residues from broccoli foliage) one day (d) following spraying, were 30.5 ng g^?1 dry soil in the sewage sludge treatment, and 46.1 and 134.5 ng g^?1 dry soil in the yard waste and no mulch treatments, respectively. Water infiltration was greater from yard waste compost treatment than from no mulch treatment, however concentrations of dimethoate in the vadose zone of the three soil treatments did not differ.     

Degradation characteristics of metribuzin in soils within the Nzoia River Drainage Basin,Kenya

Metribuzin, a triazinone herbicide, is heavily used within the expansive Nzoia River Drainage Basin in Kenya for the optimization of sugarcane yields. For field experiments, soils were spiked with metribuzin and amended with filter mud compost and Tithonia diversifolia leaves. Soils with history of metribuzin application (48 months) were also spiked with metribuzin but not amended with the organic materials. Degradation of metribuzin for the three variants was followed for a period of 102 days. Repeated exposure of metribuzin to soil and addition of filter mud compost to soil enhances the degradation of metribuzin with half dissipation times of 31 and 25 days. In soil amended with Tithonia diversfolia leaves, the half dissipation time was 32 days while in the control (unamended non history soil), it was 36 days. Laboratory studies showed that soil sterilization slowed the degradation of metribuzin, with a half dissipation time of 154 days. This confirmed that metribuzin was biochemically degraded in soil by an adapted community of microbes.     

Risk factors associated with transcervical CVS losses

Factors found to be associated with pregnancy loss after transcervical CVS were race (higher for non-white), history of spontaneous abortion, unplanned pregnancy, history of spotting or bleeding during the pregnancy prior to CVS, and placental position (higher for fundal or lateral locations). Whether the increase in loss risk is due to the factor, per se, or the factor plus the CVS cannot be determined due to the lack of appropriate control data.     

Cytogenetic results from the U.S. collaborative study on CVS

Cytogenetic data are presented for 11 473 chorionic villus sampling (CVS) procedures from nine centres in the U.S. NICHD collaborative study. A successful cytogenetic diagnosis was obtained in 99.7 per cent of cases, with data obtained from the direct method only (26 per cent), culture method only (42 per cent), or a combination of both (32 per cent). A total of 1.1 per cent of patients had a second CVS or amniocentesis procedure for reasons related to the cytogenetic diagnostic procedure, including laboratory failures (27 cases), maternal cell contamination (4 cases), or mosaic or ambiguous cytogenetic results (98 cases). There were no diagnostic errors involving trisomies for chromosomes 21, 18, and 13. For sex chromosome aneuploidies, one patient terminated her pregnancy on the basis of non-mosaic 47,XXX in the direct method prior to the availability of results from cultured cells. Subsequent analysis of the CVS cultures and fetal tissues showed only normal female cells. Other false-positive predictions involving non-mosaic aneuploidies (n = 13) were observed in the direct or culture method, but these cases involved rare aneuploidies: four cases of tetraploidy, two cases of trisomy 7, and one case each of trisomies 3, 8, 11, 15, 16,20, and 22. This indicates that rare aneuploidies observed in the direct or culture method should be subjected to follow-up by amniocentesis. Two cases of unbalanced structural abnormalities detected in the direct method were not confirmed in cultured CVS or amniotic fluid. In addition, one structural rearrangement was misinterpreted as unbalanced from the direct method, leading to pregnancy termination prior to results from cultured cells showing a balanced, inherited translocation. False-negative results (n = 8) were observed only in the direct method, including one non-mosaic fetal abnormality (trisomy 18) detected by the culture method and seven cases of fetal mosaicism (all detected by the culture method). Mosaicism was observed in 0.8 per cent of all cases, while pseudomosaicism (including single trisomic cells) was observed in 1.6 per cent of cases. Mosaicism was observed with equal frequency in the direct and culture methods, but was confirmed as fetal mosaicism more often in cases from the culture method (24 per cent) than in cases from the direct method (10 per cent). The overall rate of maternal cell contamination was 1.8 per cent for the culture method, but there was only one case of incorrect sex prediction due to complete maternal cell contamination which resulted in the birth of a normal male. The rate of maternal cell contamination was significantly higher in samples obtained by the transcervical sampling method (2. 16 per cent) than in samples obtained by the transabdominal method (0.79 per cent). From these data, it is clear that the culture method has a higher degree of diagnostic accuracy than the direct method, which should not be used as the sole diagnostic technique. The direct method can be a useful adjunct to the culture method, in which maternal cell contamination can lead to incorrect sex prediction and potentially to false-negative diagnostic results.     

Quantification of elemental and total carbon in combustion particulate matter using thermal-oxidative analysis

The use of a two-step thermal-oxidative analysis (TOA) technique for quantification of the mass of total carbon (TC) and elemental carbon (EC) of turbine engine-borne particulate matter (PM) has been evaluated. This approach could be used in lieu of analysis methods which were developed to characterize diluted PM. This effort is of particular interest as turbine engine PM emissions typically have a higher EC content than ambient aerosols, and filter sample mass loadings can be significantly greater than recommended for existing analysis techniques. Analyses were performed under a pure oxygen environment using a two-step temperature profile; reference carbon and actual PM samples were used to identify appropriate analysis conditions. Thermal gravimetric analysis (TGA) methods were used to provide guidance on the nature of the carbon in several of the materials. This was necessary as a standard reference material does not exist for determination of the EC fraction in PM. The TGA also assisted in identifying an appropriate temperature range for the first-stage of the TOA method. Quantification of TC and EC for turbine engine PM samples using TOA was compared to results obtained using the NIOSH 5040 thermal-optical method. For first-stage TOA temperatures of 350°C and 400°C, excellent agreement between the techniques was observed in both the quantified TC and EC, supporting the viability for using TOA for analysis of turbine engine PM samples. A primary benefit of using TOA for these types of PM samples is that filters with relatively high PM mass loadings (sampled at the emission source) can be readily analyzed. In addition, an entire filter sample can be evaluated, as compared to the use of a filter punch sample for the NIOSH technique. While the feasibility of using a TOA method for engine PM samples has been demonstrated, future studies to estimate potential OC charring and oxidation of EC-type material may provide additional data to assess its impact on the OC/EC fractions for other carbon-type measurements.

Implications: This work presents results and procedures of an analytical method for the determination of total and elemental carbon, i.e., TC and EC present in combustion source particulate matter samples. In general, it is shown that the LECO TOA methodology is as reliable and comprehensive as NIOSH 5040 for determining TC and EC carbon types in particulate matter present in turbine emission sources, and should be considered as an alternative. Principles of the methodology, differences, and corresponding agreement with the standard NIOSH 5040 method and TGA analysis are discussed.     

The co-application of earthworms (Dendrobaena veneta) and compost to increase hydrocarbon losses from diesel contaminated soils

The feasibility of using composted civic waste for the remediation of a soil contaminated with petroleum hydrocarbons (extractable petroleum hydrocarbons (EPH) 10+/-1.8 g kg(-1) and total 16 USEPA PAH 1.62+/-0.5 g kg(-1)) was assessed. The effects of compost to soil ratio, in combination with and without earthworm presence (Dendrobaena veneta), upon the loss of contaminants were determined for EPH (GC-FID) and PAH (GC-MS), respectively. Increasing the ratio of compost substrate to hydrocarbon impacted soil (1:0.5, 1:1, 1:2 and 1:4 (soil:compost wt/wt)) in the absence of earthworms resulted in significantly (p<0.05) greater losses of both EPH and SigmaPAH after an 84 d incubation period, when compared to the soil only control. Where earthworms were present without compost, EPH losses were significantly (p<0.05) enhanced in the soil only treatment (33.4+/-5.3% residual) compared to the soil only control (54.4+/-5.3% residual). However, PAH loss in the soil only treatment (with-earthworm presence) were only slightly enhanced (65.3+/-9.3% residual), with respect to the soil only control (69.2+/-6.4% residual). Synergistic benefits of both earthworm and compost presence were most significant for PAHs (p<0.05), and less so for EPH. (14)C-respirometer studies, to establish catabolic competence in terms of microbial mineralisation of key hydrocarbons, complemented the hydrocarbon analysis.