Fourth-corner correlation is a score test statistic in a log-linear trait–environment model that is useful in permutation testing

Ecologists wish to understand the role of traits of species in determining where each species occurs in the environment. For this, they wish to detect associations between species traits and environmental variables from three data tables, species count data from sites with associated environmental data and species trait data from data bases. These three tables leave a missing part, the fourth-corner. The fourth-corner correlations between quantitative traits and environmental variables, heuristically proposed 20 years ago, fill this corner. Generalized linear (mixed) models have been proposed more recently as a model-based alternative. This paper shows that the squared fourth-corner correlation times the total count is precisely the score test statistic for testing the linear-by-linear interaction in a Poisson log-linear model that also contains species and sites as main effects. For multiple traits and environmental variables, the score test statistic is proportional to the total inertia of a doubly constrained correspondence analysis. When the count data are over-dispersed compared to the Poisson or when there are other deviations from the model such as unobserved traits or environmental variables that interact with the observed ones, the score test statistic does not have the usual chi-square distribution. For these types of deviations, row- and column-based permutation methods (and their sequential combination) are proposed to control the type I error without undue loss of power (unless no deviation is present), as illustrated in a small simulation study. The issues for valid statistical testing are illustrated using the well-known Dutch Dune Meadow data set.     

Carbon dioxide and methane emission from subsurface peatlands and its controlling factors北大核心CSCD

Peatland is an efficient carbon dioxide (CO2) sink on the continent and plays an important role in global carbon cycle. Climate change and human activities, two of the notable global environmental issues, have accelerated the degradation of peatlands during recent years. Global warming will increase the rate of aerobic decomposition in the surface of peatlands. Carbon stored in the subsurface of peatlands will be metabolized if the climatic conditions become favorable for decomposition. This study reviewed the carbon circle of subsurface peatland in natural environment and in environments disturbed by human activity or climate change. Furthermore, the major factors (environmental and human factors) that affect the carbon cycle were also discussed. According to a previous study, subsurface peatland will rapidly participate in the carbon cycle when the peatland is degraded. Water level, vegetation, and temperature were the main natural factors affecting the carbon cycle, whereas drainage, farming, and grazing were the main anthropogenic factors. Further studies should focus on different soil layer carbon dynamics, inorganic carbon content, and conservation and restoration of peatlands. The study methods should be a combination of macro with micro scale and focus on developing deep peat research techniques. Most of the previous studies focused on greenhouse gas emission and their response factors in short-term experiments. Thus, the mechanism and process of subsurface carbon are not clear and needs further study. © 2018 Science Press. All rights reserved.     

Assessing the Risk of Ships Striking Large Whales in Marine Spatial Planning

Marine spatial planning provides a comprehensive framework for managing multiple uses of the marine environment and has the potential to minimize environmental impacts and reduce conflicts among users. Spatially explicit assessments of the risks to key marine species from human activities are a requirement of marine spatial planning. We assessed the risk of ships striking humpback (Megaptera novaeangliae), blue (Balaenoptera musculus), and fin (Balaenoptera physalus) whales in alternative shipping routes derived from patterns of shipping traffic off Southern California (U.S.A.). Specifically, we developed whale‐habitat models and assumed ship‐strike risk for the alternative shipping routes was proportional to the number of whales predicted by the models to occur within each route. This definition of risk assumes all ships travel within a single route. We also calculated risk assuming ships travel via multiple routes. We estimated the potential for conflict between shipping and other uses (military training and fishing) due to overlap with the routes. We also estimated the overlap between shipping routes and protected areas. The route with the lowest risk for humpback whales had the highest risk for fin whales and vice versa. Risk to both species may be ameliorated by creating a new route south of the northern Channel Islands and spreading traffic between this new route and the existing route in the Santa Barbara Channel. Creating a longer route may reduce the overlap between shipping and other uses by concentrating shipping traffic. Blue whales are distributed more evenly across our study area than humpback and fin whales; thus, risk could not be ameliorated by concentrating shipping traffic in any of the routes we considered. Reducing ship‐strike risk for blue whales may be necessary because our estimate of the potential number of strikes suggests that they are likely to exceed allowable levels of anthropogenic impacts established under U.S. laws. Evaluación del Riesgo de Colisiones de Barcos y Ballenas en la Planificación Marina Espacial     

Landscape consequences of aggregation rules for functional equivalence in compensatory mitigation programs

Mitigation and offset programs designed to compensate for ecosystem function losses due to development must balance losses from affected ecosystems with gains in restored ecosystems. Aggregation rules applied to ecosystem functions to assess site equivalence are based on implicit assumptions about the substitutability of functions among sites and can profoundly influence the distribution of restored ecosystem functions on the landscape. We investigated the consequences of rules applied to the aggregation of ecosystem functions for wetland offsets in the Beaverhill watershed in Alberta, Canada. We considered the fate of 3 ecosystem functions: hydrology, water purification, and biodiversity. We set up an affect‐and‐offset algorithm to simulate the effect of aggregation rules on ecosystem function for wetland offsets. Cobenefits and trade‐offs among functions and the constraints posed by the quantity and quality of restorable sites resulted in a redistribution of functions between affected and offset wetlands. Hydrology and water purification functions were positively correlated with one another and negatively correlated with biodiversity function. Weighted‐average rules did not replace functions in proportion to their weights. Rules prioritizing biodiversity function led to more monofunctional wetlands and landscapes. The minimum rule, for which the wetland score was equal to the worst performing function, promoted multifunctional wetlands and landscapes. The maximum rule, for which the wetland score was equal to the best performing function, promoted monofunctional wetlands and multifunctional landscapes. Because of implicit trade‐offs among ecosystem functions, no‐net‐loss objectives for multiple functions should be constructed within a landscape context. Based on our results, we suggest criteria for the design of aggregation rules for no net loss of ecosystem functions within a landscape context include the concepts of substitutability, cobenefits and trade‐offs, landscape constraints, heterogeneity, and the precautionary principle.     

Habitat Split as a Cause of Local Population Declines of Amphibians with Aquatic Larvae

Abstract:  Most amphibian species have biphasic life histories and undergo an ontogenetic shift from aquatic to terrestrial habitats. In deforested landscapes, streams and forest fragments are frequently disjunct, jeopardizing the life cycle of forest-associated amphibians with aquatic larvae. We tested the impact of habitat split—defined as human-induced disconnection between habitats used by different life-history stages of a species—on four forest-associated amphibian species in a severely fragmented landscape of the Brazilian Atlantic Forest. We surveyed amphibians in forest fragments with and without streams (referred to as wet and dry fragments, respectively), including the adjacent grass-field matrix. Our comparison of capture rates in dry fragments and nearby streams in the matrix allowed us to evaluate the number of individuals that engaged in high-risk migrations through nonforested habitats. Adult amphibians moved from dry fragments to matrix streams at the beginning of the rainy season, reproduced, and returned at the end of the breeding period. Juveniles of the year moved to dry fragments along with adults. These risky reproductive migrations through nonforested habitats that expose individuals to dehydration, predation, and other hazards may cause population declines in dry fragments. Indeed, capture rates were significantly lower in dry fragments compared with wet fragments. Declining amphibians would strongly benefit from investments in the conservation and restoration of riparian vegetation and corridors linking breeding and nonbreeding areas.     

Differing distributions of potentially competing amphipods,copepods and gastropods among specimens of the intertidal alga Pelvetia fastigiata

Possible competitive interactions are inferred from the distributions and abundances of species within three invertebrate groups (Hyale spp., Ampithoe spp. and thallusdwelling species) among unmanipulated and experimental specimens of the brown alga Pelvetia fastigiata collected between 1974 and 1976, inclusive, at La Jolla, California, USA. During the fall, when the vagile amphipods Hyale grandicornis and H. frequens were relatively abundant, they were found mostly on specimens of P. fastigiata at upper mid-intertidal and mid-tide levels, respectively. H. grandicornis often dispersed to mid-tide levels, but the two species cooccurred on few plants. Although H. frequens infrequently occupied P. fastigiata in the spring, H. grandicornis still generally sheltered in upper mid-intertidal plants, in part, because the net reproduction rates of H. grandicornis were low when space was available. The tubiculous amphipod A. tea usually was the only Ampithoe species on P. fastigiata; however, A. lindbergii and A. pollex sometimes dispersed to and released broods on this alga, particularly during the early summer when abundances of A. tea were relatively low. Similarly, net immigration rates of other thallus-dwelling copepods were relatively high when abundances of Scutellidium lamellipes were low. Moreover, several copepods were most abundant on different specimens of small isolated plants, and thallus-dwelling gastropods on larger plants at sites with relatively low densities of S. lamellipes on P. fastigiata; such copepods and gastropods generally were not abundant on aggregated plants sheltering large numbers of S. lamellipes. Such differences suggest that competition for food or space is among the factors causing negative correlations in the densities of Ampithoe spp. and thallusdwelling species on P. fastigiata.     

Sand stress as a non-determinant of habitat segregation of indigenous (Perna perna) and invasive (Mytilus galloprovincialis) mussels in South Africa

Periodical sand inundation influences diversity and distribution of intertidal species throughout the world. This study investigates the effect of sand stress on survival and on habitat segregation of the two dominant mussel species living in South Africa, the invasive Mytilus galloprovincialis and the indigenous Perna perna. P. perna occupies a lower intertidal zone which, monthly surveys over 1.5 years showed, is covered by sand for longer periods than the higher M. galloprovincialis zone. Despite this, when buried under sand, P. perna mortality rates were significantly higher than those of M. galloprovincialis in both laboratory and in field experiments. Under anoxic condition, P. perna mortality rates were still significantly higher than those for M. galloprovincialis, but both species died later than when exposed to sand burial, underlining the importance of the physical action of sand on mussel internal organs. When buried, both species accumulate sediments within the shell valves while still alive, but the quantities are much greater for P. perna. This suggests that P. perna gills are more severely damaged by sand abrasion and could explain its higher mortality rates. M. galloprovincialis has longer labial palps than P. perna, indicating a higher particle sorting ability and consequently explaining its lower mortality rates when exposed to sand in suspension. Habitat segregation is often explained by physiological tolerances, but in this case, such explanations fail. Although sand stress strongly affects the survival of the two species, it does not explain their vertical zonation. Contrary to our expectations, the species that is less well adapted to cope with sand stress maintains dominance in a habitat where such stress is high. GI Zardi, KR Nicastro contributed equally to the work