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151.
Christine Susan Fagnant Alexandra Lynn Kossik Nicolette Angela Zhou Liliana Sánchez-Gonzalez Jill Christin Falman Erika Karen Keim Yarrow Linden Alana Scheibe Kilala Sayisha Barnes Nicola Koren Beck David S. Boyle John Scott Meschke 《Food and environmental virology》2017,9(4):383-394
Environmental surveillance of poliovirus (PV) and other non-enveloped viruses can help identify silent circulation and is necessary to certify eradication. The bag-mediated filtration system is an efficient method to filter large volumes of environmental waters at field sites for monitoring the presence of viruses. As filters may require long transit times to off-site laboratories for processing, viral inactivation or overgrowth of bacteria and fungi can interfere with virus detection and quantification (Miki and Jacquet in Aquatic Microb Ecol 51(2):195–208, 2008). To evaluate virus survival over time on ViroCap? filters, the filters were seeded with PV type 1 (PV1) and/or MS2 and then dosed with preservatives or antibiotics prior to storage and elution. These filters were stored at various temperatures and time periods, and then eluted for PV1 and MS2 recovery quantification. Filters dosed with the preservative combination of 2% sodium benzoate and 0.2% calcium propionate had increased virus survival over time when stored at 25 °C, compared to samples stored at 25 °C with no preservatives. While elution within 24 h of filtration is recommended, if storage or shipping is required then this preservative mixture can help preserve sample integrity. Addition of an antibiotic cocktail containing cephapirin, gentamicin, and Proclin? 300 increased recovery after storage at 4 and 25 °C, when compared to storage with no antibiotics. The antibiotic cocktail can aid sample preservation if access to appropriate antibiotics storage is available and sample cold chain is unreliable. This study demonstrated that the use of preservatives or antibiotics is a simple, cost-effective method to improve virus detection from ViroCap cartridge filters over time. 相似文献
152.
153.
Leena Maunula M. Rönnqvist R. Åberg J. Lunden M. Nevas 《Food and environmental virology》2017,9(3):358-359
154.
Emily Rames Anne Roiko Helen Stratton Joanne Macdonald 《Food and environmental virology》2017,9(3):354-357
PCR inhibitory substances in complex sample matrices can cause false negatives or under-estimation of target concentration. This study assessed DNA heat treatment for reducing inhibition during qPCR analysis of human adenovirus (HAdV) in wastewater samples. Inhibition was reduced by heat treating DNA, where mean HAdV concentration was increased by 0.71 log10 GC/L (and up to 3.04 log10 GC/L in one case), and replicate variability and false negatives were reduced. DNA heat treatment should be further investigated for improving reliability of HAdV concentration estimates in water, which can support more accurate assessment of health risks associated with viral pathogen exposure. 相似文献
155.
156.
The capability of a cost-effective and a small size decentralized pilot wastewater treatment plant (WWTP) to remove enteric viruses such as rotavirus, norovirus genogroup I (GGI), norovirus genogroup II (GGII), Hepatitis E virus (HEV), and adenovirus was studied. This pilot plant is an integrated hybrid anaerobic/aerobic setup which consisted of anaerobic sludge blanket (UASB), biological aerated filter (BAF), and inclined plate settler (IPS). Both the UASB and BAF are packed with a non-woven polyester fabric (NWPF). Results indicated that the overall log10 reductions of enteric viruses’ genome copies through the whole system were 3.1 ± 1, 3.3 ± 0.5, and 2.6 ± 0.9 log10 for rotavirus, norovirus GGI, and adenovirus, respectively. Reduction efficiency for both norovirus GGII and HEV after the different treatment steps could not be calculated because there were no significant numbers of positive samples for both viruses. The overall reduction of rotavirus infectious units through the whole system was 2.2 ± 0.8 log10 reduction which is very close to the overall log10 reduction of adenovirus infectious units through the whole system which was 2.1 ± 0.8 log10 reduction. There was no considerable difference in the removal efficiency for different rotavirus G and P types. Adenovirus 41 was the only type detected in the all positive samples. Although the pilot WWTP investigated is cost effective, has a small footprint, does not need a long distance network pipes, and easy to operate, its efficiency to remove enteric viruses is comparable with the conventional centralized WWTPs. 相似文献
157.
Maria Rönnqvist Thedi Ziegler Carl-Henrik von Bonsdorff Leena Maunula 《Food and environmental virology》2012,4(1):26-33
Recent events have shown that humans may become infected with some pathogenic avian influenza A viruses (AIV). Since soil
and water, including lakes, rivers, and seashores, may be contaminated by AIV excreted by birds, effective methods are needed
for monitoring water for emerging viruses. Combining water filtration with molecular methods such as PCR is a fast and effective
way for detecting viruses. The objective of this study was to apply a convenient method for the detection of AIV in natural
water samples. Distilled water and lake, river, and seawater were artificially contaminated with AIV (H5N3) and passed through
a filter system. AIV was detected from filter membrane by real-time RT-PCR. The performance of Zetapor, SMWP, and Sartobind
D5F membranes in recovering influenza viruses was first evaluated using contaminated distilled water. SWMP, which gave the
highest virus recoveries, was then compared with a pre-filter combined GF/F filter membrane in a trial using natural water
samples. In this study, the cellulose membrane SMWP was found to be practical for recovery of AIVs in water. Viral yields
varied between 62.1 and 65.9% in distilled water and between 1 and 16.7% in natural water samples. The borosilicate glass
membrane GF/F combined with pre-filter was also feasible in filtering natural water samples with viral yields from 1.98 to
7.33%. The methods described can be used for monitoring fresh and seawater samples for the presence of AIV and to determine
the source of AIV transmission in an outbreak situation. 相似文献
158.
Sara Romani Seyed Reza Mohebbi Seyed Masoud Hosseini Pedram Azimzadeh Mohsen Vahedi Faramarz Derakhshan Mohammad Reza Zali 《Food and environmental virology》2012,4(1):1-5
Noroviruses are one of important agents that cause acute viral gastroenteritis worldwide. These viruses are belonging to Caliciviridae
family and are genetically diverse. To date, there is no valuable data about prevalence of norovirus infection and the dominant
genogroup/genotype among Iranian population. The objective of this study was to determine the frequency of norovirus infection
in Iranian patients with gastroenteritis referred to three hospitals of Tehran and to specify the dominant genogroup/genotype
of this virus among our study population. A total of 293 patients with acute gastroenteritis were included in the study. Detection
of norovirus was performed using RT-PCR method and confirmed by direct sequencing with specific designed primers for capsid
region of norovirus genome. Phylogenetic analysis was performed using the neighbor-joining method. Norovirus strains identified
in our study were subsequently categorized according to previously defined genogroup/genotypes. Of these, norovirus GII was
dominant genogroup. Sixty-five percent (17 of 26) of positive samples were determined as GII and 35% (9 of 26) were determined
as GI, respectively, in 2008–2009. And among 8 sequenced strains of genogroup II the most frequent genotype was GII.3. The
results of this study indicated that norovirus must be considered as one of the infectious causes of acute gastroenteritis
among Iranian population. We also found that GII.3 is more prevalent in our study population. To the best of our knowledge
there is limited data about the role of noroviruses in children and adults’ acute gastroenteritis among Iranian patients and
this prevalence and genotyping report of norovirus infection could be remarkable for further studies. 相似文献
159.
A framework for analyzing climate change adaptations as actions 总被引:1,自引:0,他引:1
Klaus Eisenack Rebecca Stecker 《Mitigation and Adaptation Strategies for Global Change》2012,17(3):243-260
Developing generalized theories about adaptation to climate change requires common concepts to map different adaptation situations.
The paper aims to contribute to this endeavor by presenting a novel framework that conceptualizes adaptations to climate change
as actions. The framework is intended to systematically analyze the actor relations involved in adaptations and the barriers
to their implementation. By combining established scientific action theories with terminology from the Intergovernmental Panel
on Climate Change (IPCC) in an innovative way, it can be used to clarify the notion of adaptation used in adaptation assessments.
The framework’s potential is illustrated by a case study on cooling water management in the river Rhine catchment and by the
elucidation of some prominent concepts in adaptation research. We show that by framing adaptations as actions, the purpose
of adaptations and how they tend to connect up in means-ends-chains becomes crucial. Actors can take different functional
roles as exposure unit, operator and receptor of adaptation. A mismatch of these roles can lead to barriers to adaptation,
of which we deduce four types: complex actor relations, missing operators, missing means and unemployed means. The case study
yields a complex bundle of adaptations, and shows that the potential barriers involved are quite diverse. There is thus no
blueprint solution. Although we identify entry points for adaptation, the analysis leads to a skeptical conclusion for adapting
cooling water management in the whole Rhine catchment. 相似文献
160.
Ellen M. Douglas Paul H. Kirshen Michael Paolisso Chris Watson Jack Wiggin Ashley Enrici Matthias Ruth 《Mitigation and Adaptation Strategies for Global Change》2012,17(5):537-562
We explored the possible future impacts of increased coastal flooding due to sea level rise and the potential adaptation responses
of two urban, environmental justice communities in the metropolitan Boston area of Massachusetts. East Boston is predominantly
a residential area with some industrial and commercial activities, particularly along the coastal fringe. Everett, a city
to the north of Boston, has a diversified industrial and commercial base. While these two communities have similar socioeconomic
characteristics, they differ substantially in the extent to which residents would be impacted by increased coastal flooding.
In East Boston, a large portion of residents would be flooded, while in Everett, it is the commercial/industrial districts
that are primarily vulnerable. Through a series of workshops with residents in each community, we found that the target populations
do not have an adaptation perspective or knowledge of any resources that could assist them in this challenge. Furthermore,
they do not feel included in the planning processes within their communities. However, a common incentive for both communities
was an intense commitment to their communities and an eagerness to learn more and become actively engaged in decisions regarding
climate change adaptation. The lessons that can be applied to other studies include 1) images are powerful tools in communicating
concepts, 2) understanding existing cultural knowledge and values in adaptation planning is essential to the planning process
and 3) engaging local residents at the beginning of the process can create important educational opportunities and develop
trust and consensus that is necessary for moving from concept to implementation. 相似文献