Use of ambiguous detections to improve estimates from species distribution models

As large carnivores recover throughout Europe, their distribution needs to be studied to determine their conservation status and assess the potential for human-carnivore conflicts. However, efficient monitoring of many large carnivore species is challenging due to their rarity, elusive behavior, and large home ranges. Their monitoring can include opportunistic sightings from citizens in addition to designed surveys. Two types of detection errors may occur in such monitoring schemes: false negatives and false positives. False-negative detections can be accounted for in species distribution models (SDMs) that deal with imperfect detection. False-positive detections, due to species misidentification, have rarely been accounted for in SDMs. Generally, researchers use ad hoc data-filtering methods to discard ambiguous observations prior to analysis. These practices may discard valuable ecological information on the distribution of a species. We investigated the costs and benefits of including data types that may include false positives rather than discarding them for SDMs of large carnivores. We used a dynamic occupancy model that simultaneously accounts for false negatives and positives to jointly analyze data that included both unambiguous detections and ambiguous detections. We used simulations to compare the performances of our model with a model fitted on unambiguous data only. We tested the 2 models in 4 scenarios in which parameters that control false-positive detections and true detections varied. We applied our model to data from the monitoring of the Eurasian lynx (Lynx lynx) in the European Alps. The addition of ambiguous detections increased the precision of parameter estimates. For the Eurasian lynx, incorporating ambiguous detections produced more precise estimates of the ecological parameters and revealed additional occupied sites in areas where the species is likely expanding. Overall, we found that ambiguous data should be considered when studying the distribution of large carnivores through the use of dynamic occupancy models that account for misidentification.     

Assessing the safety criticality of driver behavior toward cyclists at intersections

Abstract

Objective: Detailed analyses of car-to-cyclist accidents show that drivers intending to turn right at T-junctions collide more often with cyclists crossing from the right side on the bicycle lane than drivers intending to turn left. This fact has led to numerous studies examining the behavior of drivers turning left and right. However, the most essential question still has not been sufficiently answered: is the behavior of drivers intending to turn right generally more safety critical than the behavior of those intending to turn left? The purpose of this article is to provide a method that allows to determine whether a driver’s behavior toward cyclists can retrospectively be assessed as critical or non-critical.

Methods: Several theoretical considerations enriched by findings of experimental studies were employed to devise a multi-measure method. This method was applied to a dataset containing real-world approaching behavior of 48 drivers turning right and left at four T-junctions with different sight obstructions. For each driver a behavior-specific criticality was defined based on both, their driving and gaze behavior. Moreover, based on the behavior-specific criticality of each driver, the required field of view to see a cyclist from the right was defined and was set into relation with the available field of view of the T-junction.

Results: The results show that only a small portion of the drivers within the dataset would have posed an actual risk to cyclists crossing from the right side. Those situations with a higher safety criticality did not only arise when drivers intended to turn right, but also left.

Conclusion: Therefore, the analysis can only provide an explanation for the higher proportion of accidents between drivers turning right and cyclists crossing from the right side in certain situations. Further research, for example analyses of exposure data regarding the frequency of turning manoeuvers at T-junctions, is needed in order to explain the higher proportion of accidents between drivers turning right and cyclists crossing from the right side.     

Polychlorinated dibenzo-p-dioxins, dibenzofurans, biphenyls, naphthalenes and polybrominated diphenyl ethers in the edible fish caught from the Baltic Sea and lakes in Finland

A total of 156 fish composite samples were collected from five areas of the Baltic Sea and from three lakes and analysed for polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs), polychlorinated biphenyls (PCBs), polychlorinated naphthalenes (PCNs) and polybrominated diphenyl ethers (PBDEs). The European Union's maximum permissible level for PCDD/Fs, 4 pg WHO-TEQ/g fresh weight (fw), was exceeded in salmon, river lamprey and Baltic herring. In other species from the Baltic Sea, the 90th percentile was 3.42 pg WHO(PCDD/F)-TEQ/g fw. In the lake fish, the concentrations of PCDD/Fs, PCBs and PCNs were only 29-46% of those in the same species caught from the Baltic Sea, whereas the concentrations of PBDEs in the lake fish were as high as in the Baltic Sea fish. Dioxin-like PCBs contributed to the total dioxin-like toxicity of PCBs and PCDD/Fs by 49+/-12% in all the analysed samples.     

Synthesis of fluorinated polybrominated diphenyl ethers (F-PBDEs) as internal standards for environmental analysis

Polybrominated diphenyl ethers (PBDEs) have become widely distributed as environmental contaminants due to their wide-spread use as flame retardants. Their structural similarity to other halogenated organic pollutants, for example polychlorinated biphenyls (PCBs), has led to speculation that they may have similar toxicological properties and effects. Recent focus on PBDEs as possible priority pollutants has also led to an increasing need for reference standards of PBDEs for toxicological studies and for environmental analysis. In this work we synthesized a series of fluorinated PBDEs (F-PBDEs) which can be used as possible internal standards, as an alternative to high-cost alternatives, such as the (13)C-labelled analogues. F-PBDEs have been synthesized by using different coupling reactions and by bromination of fluorinated starting materials.     

A prehistoric tsunami induced long-lasting ecosystem changes on a semi-arid tropical island—the case of Boka Bartol (Bonaire, Leeward Antilles)

The Caribbean is highly vulnerable to coastal hazards. Based on their short recurrence intervals over the intra-American seas, high-category tropical cyclones and their associated effects of elevated storm surge, heavy wave impacts, mudslides and floods represent the most serious threat. Given the abundance of historical accounts and trigger mechanisms (strike-slip motion and oblique collision at the northern and southern Caribbean plate boundaries, submarine and coastal landslides, volcanism), tsunamis must be considered as well. This paper presents interdisciplinary multi-proxy investigations of sediment cores (grain size distribution, carbonate content, loss-on-ignition, magnetic susceptibility, microfauna, macrofauna) from Washington-Slagbaai National Park, NW Bonaire (Leeward Antilles). No historical tsunami is recorded for this island. However, an allochthonous marine layer found in all cores at Boka Bartol reveals several sedimentary criteria typically linked with tsunami deposits. Calibrated ¹⁴C data from these cores point to a palaeotsunami with a maximum age of 3,300 years. Alternative explanations for the creation of this layer, such as inland flooding during tropical cyclones, cannot entirely be ruled out, though in recent times even the strongest of these events on Bonaire did not deposit significant amounts of sediment onshore. The setting of Boka Bartol changed from an open mangrove-fringed embayment into a poly- to hyperhaline lagoon due to the establishment or closure of a barrier of coral rubble during or subsequent to the inferred event. The timing of the event is supported by further sedimentary evidence from other lagoonal and alluvial archives on Bonaire.     

Differential effects of temperature variability on the transmission of a marine parasite

Temperature variability is particularly pronounced in intertidal systems. The importance of considering this variability has been increasingly recognised, especially in the context of climate change and disease dynamics. Here, we investigated the effects of temperature variability on the transmission of the intertidal trematode Maritrema novaezealandensis. The experimental treatments were 15 °C (control), 15 + 5 °C daily, 15 + 10 °C every second day, 15 + 15 °C every third day (overall equal thermal loading), and a heat wave treatment (15 + 10 °C daily). Daily 6 h incubations were carried out corresponding to daytime low tides over a 12-day period. Effects on output of transmission stages (cercariae) from infected Zeacumantus subcarinatus snail hosts and transmission success of cercariae to Paracalliope novizealandiae amphipod hosts were quantified, as well as the survival of amphipods. Results showed differential effects on output and transmission success. The number of cercariae emerging was similar for treatments with equal thermal loading, but was substantially increased in the heat wave treatment. Transmission success was highest and comparable for the treatments with regular daily temperature increases (i.e. 15 + 5 °C and heat wave), compared to other treatments. Amphipod survival was not affected by temperature treatment directly, but by the number of parasites infecting an amphipod, as well as amphipod sex. These results demonstrate that cercarial output depends mostly on total thermal loading, whereas successful infection of amphipods is determined by total time above 15 °C. Repeated exposure to ~25 °C, as expected under a heat wave scenario, therefore increases both transmission pressure and success, and hence, the risk of parasite-induced mortality in amphipods.     

Using the useful: characteristics of used palms in south-eastern Ecuador

Plant families differ greatly with regard to their usefulness to humans. Within families there are also large differences in the usefulness between species; some are used for many different purposes, while most are used for few or no purposes. Which ones and to what extent species are used often varies between areas and cultural groups. To better understand variation in speciesȁ9 usefulness we studied the use of different palm species (Arecaceae) among two socio-cultural groups (one indigenous and one colonist group of mixed ethnic descent) living in the same area. We used regression and correlation analyses to determine to what degree use is related to ecological and morphological characteristics, to geographical differences in abundance, and to peopleȁ9s perceptions of speciesȁ9 availability. We found that abundance and height were the most important characteristics related to use, possibly due to the effect of height and abundance on salience, search time, and (for height) suitability for different purposes. Abundance was most important for palm heart extraction, probably due to the opportunistic nature of this activity. There was no difference between socio-cultural groups with regard to the relationship between palm abundance and use, but abundance seemed to be more decisive for people who used moderate amounts of palms. Finally, it was seen that peopleȁ9s estimates of palm abundance were not related to our measurements of abundance, which may be due to use of different spatial scales in evaluating abundance and to the subjective nature of terms such as “rare” and “abundant”.