Nitrogen excretion by some demersal macrozooplankton in Heron and One Tree Reefs,Great Barrier Reef,Australia

Nitrogen excretion rates of demersal macrozooplankton were measured together with nitrogen concentrations in the water column and sediments in lagoons of Heron Reef and One Tree Reef, Great Barrier Reef, Australia, during August and November 1991. Excretion rates increased with body weight, and weight-specific excretion rates of the demersal macrozooplankton were comparable to those of pelagic zooplankton and meiofauna in the Great Barrier Reef. Values of demersal macrozooplankton abundance from previous studies and excretion rates from this study were combined to estimate fluxes of ammonium from demersal macrozooplankton in coral reef lagoons. The estimated fluxes in the water column and sediments were 12 M NH₄ m^-2 d^-1 and 34 M NH₄ m^-2d^-1, respectively. These fluxes were compared with reported fluxes of ammonium in coral reef lagoons in the Great Barrier Reef, Australia. The estimated flux from the demersal macrozooplankton in the water column was 29 and 9% of those reported for microheterotroph regeneration and phytoplankton utilization, respectively. It was 10% of the reported advective flux during periods of low advection and 13% of the maximum efflux from sediments computed from diffusion models. The estimated flux from the demersal macrozooplankton in the sediments exceeded those reported for meiofauna, and was 5 to 32% and 2 to 13% of those reported for ammonification and utilization in sediments, respectively. The potential importance of demersal macrozooplankton in mediating sediment-water column exchanges in the absence of diffusive effluxes and when they swarm is discussed.     

Vertical community structure and ontogenetic distribution of chaetognaths in upper pelagic waters of the Eastern Mediterranean

The vertical distribution of chaetognaths and their developmental stages were investigated in the pelagic waters (0 to 500 m) of the Eastern Mediterranean Sea. Twenty vertical hauls were taken during autumn 1991 in the Ionian, Cretan, Levantine and Rhodes Seas. The chaetognaths Sagitta bipunctata and S. enflata had the same median depth distributions, which differed from those of S. minima, S. serratodentata, S. lyra, Krohnitta subtilis, and S. decipiens, while S. hexaptera occurred only sporadically. S. bipunctata and S. enflata were mainly restricted to <50 m, and while their distributions co-occurred their stage composition differed. The remaining species took up progressively deeper positions in the water column. Ontogenetic vertical distributions, with the older stages occurring at greater depth, were only observed for the mesopelagic species S. lyra and S. decipiens. Diurnal vertical migration was not detected in any of the species nor in their developmental stages.     

Effects of Detectability on Estimates of Geographic Range Size in Bignonieae

Abstract: Extinction risk has not been evaluated for 96% of all described plant species. Given that the Global Strategy for Plant Conservation proposes preliminary conservation assessments of all described plant species by 2010, herbarium specimens (i.e., primary occurrence data) are increasingly being used to infer threat components from estimates of geographic range size. Nevertheless, estimates of range size based on herbarium data may be inaccurate due to collection bias associated with interspecific variation in detectability. We used data on 377 species of Bignonieae to test the hypothesis that there is a positive relationship between detectability and estimates of geographic range size derived from herbarium specimens. This relationship is expected if the proportion of the true geographic range size of a species that is documented by herbarium specimens is given by the product of the true geographic range size and the detectability of the species, assuming no relationship between true geographic range size and detectability. We developed 4 measures of detectability that can be estimated from herbarium data and examined the relationship between detectability and 2 types of estimates of geographic range size: area of occupancy and extent of occurrence. Our results from regressing estimates of extent of occurrence and area of occupancy on detectability across genera provided no support for this hypothesis. The same was true for regressions of estimated extent of occurrence on detectability across species within genera. Nevertheless, regressions of estimated area of occupancy on detectability across species within genera provided partial support for our hypothesis. We considered 3 possible explanations for this mixed outcome: violation of the assumption of no relationship between true geographic range size and detectability; the relationships between estimated geographic range size and detectability may be an artifact of a negative relationship between estimated area of occupancy and the sampling variance of detectability; detectability may have had 2 opposite effects on estimated species range sizes: one determines the proportion of the true range of a species documented by herbarium specimens and the other determines the distribution of true range size for the species actually observed with herbarium data. Our findings should help improve understanding of the potential biases incurred with the use of herbarium data.     

Bridging the gap between ecophysiological and genetic knowledge to assess the adaptive potential of European beech

In this study we aimed to combine knowledge of the ecophysiology and genetics of European beech to assess the potential of this species to adapt to environmental change. Therefore, we performed field and experimental studies on the genetic and ecophysiological functioning of beech. This information was integrated through a coupled genetic–ecophysiological model for individual trees that was parameterized with information derived from our own studies or from the literature. Using the model, we evaluated the adaptive response of beech stands in two ways: firstly, through sensitivity analyses (of initial genetic diversity, pollen dispersal distance, heritability of selected phenotypic traits, and forest management, representing disturbances) and secondly, through the evaluation of the responses of phenotypic traits and their genetic diversity to four management regimes applied to 10 study plots distributed over Western Europe. The model results indicate that the interval between recruitment events strongly affects the rate of adaptive response, because selection is most severe during the early stages of forest development. Forest management regimes largely determine recruitment intervals and thereby the potential for adaptive responses. Forest management regimes also determine the number of mother trees that contribute to the next generation and thereby the genetic variation that is maintained. Consequently, undisturbed forests maintain the largest amount of genetic variation, as recruitment intervals approach the longevity of trees and many mother trees contribute to the next generation. However, undisturbed forests have the slowest adaptive response, for the same reasons.Gene flow through pollen dispersal may compensate for the loss in genetic diversity brought about by selection. The sensitivity analysis showed that the total genetic diversity of a 2 ha stand is not affected by gene flow if the pollen distance distribution is varied from highly left-skewed to almost flat. However, a stand with a prevailing short-distance gene flow has a more pronounced spatial genetic structure than stands with equal short- and long-distance gene flows. The build-up of a spatial genetic structure is also strongly determined by the recruitment interval. Overall, the modelling results indicate that European beech has high adaptive potential to environmental change if recruitment intervals are short and many mother trees contribute to the next generation.The findings have two implications for modelling studies on the impacts of climate change on forests. Firstly: it cannot be taken for granted that parameter values remain constant over a time horizon of even a few generations – this is particularly important for threshold values subject to strong selection, like budburst, frost hardiness, drought tolerance, as used in species area models. Secondly: forest management should be taken into account in future assessments, as management affects the rate of adaptive response and thereby the response on trees and forests to environmental change, and because few forests are unmanaged. We conclude that a coupled ecophysiological and quantitative genetic tree model is a useful tool for such studies.     

A morphological and structural study of the larval shell from the abalone <Emphasis Type="Italic">Haliotis tuberculata</Emphasis>

The larval shell of the marine gastropod Haliotis tuberculata was investigated by polarised light microscopy, scanning electron microscopy, Raman microspectroscopy and infra-red spectroscopy. Trochophore and veliger larval sections were used for histological examination of the growing shell and each larval stage was related to the shell development and the appearance of calcified formations. We determined the stage of initial calcification by specific staining combined with polarised light examination. The shell of 30-h-old pre-veliger larvae was found to be mineralized, confirming that calcification occurred before larval torsion. Using both infra-red and Raman spectroscopy, we showed that CaCO₃ deposition occurred at the pre-veliger stage and that the mineral phase initially deposited was essentially composed of aragonite.     

Phylogeography of the Southwestern Atlantic menhaden genus <Emphasis Type="Italic">Brevoortia</Emphasis> (Clupeidae,Alosinae)

Among pelagic fish, the Southwestern Atlantic menhaden genus Brevoortia (Clupeidae, Alosinae) constitutes an important species model to investigate the patterns of genetic differentiation. It is abundant in the Río de la Plata estuary and in the Atlantic coastal lagoons system from Uruguay and Southern Brazil. To access in the taxa discrimination and population structure in Brevoortia we perform a phylogeographic approach based on mitochondrial cytochrome b (cyt-b) sequences including 240 individuals from 16 collecting sites. Among the 720 bp cyt-b sequenced, 199 correspond to variables and 88 to phylogenetically informative sites. High values of haplotype diversity (h = 1.000) and nucleotide diversity (π = 0.061), as well as an average of 0.084 polymorphic segregating sites and 46 different haplotypes were found. Maximum likelihood analysis based on the GTR + I + G model and Bayesian inference strongly support the idea that B. aurea is the only species of the genus inhabiting the Southwestern Atlantic region. Our analyses revealed a complex population pattern characterized by the existence of long-term highly structured genetic assemblages of mixed stocks. Each monophyletic entity included individuals from different collecting sites, different age groups and collected in different years. Our data also suggest that the recruitment of unrelated mtDNA haplotypes carried out by individuals within schools could be occurring in the same nursery areas revealing the existence of many different maternal lineages. A scenario where different simultaneously and successively mixed mtDNA lineages remain historically connected through basal haplotypes among different clades could explains more accurately the complex and ordered metapopulation dynamic found in this pelagic fish.     

Limited trophodynamics effects of trawling on three Mediterranean fishes

Trawling has a significant effect on the structure of marine communities, yet the ubiquity of trawling impacts makes testing such effects difficult. This study examines trawling impacts on trophodynamics of three fishes among the Gulfs of Castellammare and Termini Imerese (northern Sicily), the first of which has been subject to a trawling ban since 1990 that initially resulted in an eightfold increase in total fish biomass. The Gulf of Termini Imerese remains heavily fished and was treated as a control site. Nitrogen and carbon stable isotope data were used to assess fishing induced changes in trophic levels or source of production supporting three demersal fish species; Mullus barbatus, Merluccius merluccius and Lophius budegassa following a control-impact approach. The exclusion of trawling resulted in only small alteration of δ¹⁵N in two of the three-three species. There were no systematic changes in the δ¹³C of any species sampled. Thus, a large influence of trawling on the trophodynamics of the studied species at sampled size was discounted. Although stable isotopes do not have spatial or temporal resolution to identify detailed shifts in diet composition, their integrative nature highlights that the trophic role these species play is robust to fishing impacts at scales over which the fishery operates. This is despite a significant increase in the abundance of these species and of total fish biomass within the protected area.

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Occurrence and seasonal variation of bacterial indicators of faecal pollution along Thoothukudi Coast, Tamil Nadu

Theprevalence and seasonal variation of bacterial indicators of faecal pollution such as total coliform bacteria, faecal coliform bacteria, Escherichia coli and faecal streptococci were investigated in samples of water and beach sand from the four fish landing centres of Thoothukudi. Further the samples were screened for Salmonella to study the reliability of faecal indicator bacteria as an index of human pathogenic bacteria. Total coliform bacteria, faecal coliform bacteria and Escherichia coli were isolated from all four landing centres from undetectable to the maximum detectable level of over Most Probable Number 140 throughout the year with no obvious seasonal variation. Faecal streptococci were also detected in most samples. There was no discernable relationship between faecal indicators and physical parameters. The relationship between faecal indicators and Salmonella was not significant (p > 0.05). The results showed that the coastal waters along Thoothukudi is polluted and presents a potential risk to public for recreational and fishing activities.     

Incorporating putatively neutral and adaptive genomic data into marine conservation planning

The availability of genomic data for an increasing number of species makes it possible to incorporate evolutionary processes into conservation plans. Recent studies show how genetic data can inform spatial conservation prioritization (SCP), but they focus on metrics of diversity and distinctness derived primarily from neutral genetic data sets. Identifying adaptive genetic markers can provide important information regarding the capacity for populations to adapt to environmental change. Yet, the effect of including metrics based on adaptive genomic data into SCP in comparison to more widely used neutral genetic metrics has not been explored. We used existing genomic data on a commercially exploited species, the giant California sea cucumber (Parastichopus californicus), to perform SCP for the coastal region of British Columbia (BC), Canada. Using a RAD-seq data set for 717 P. californicus individuals across 24 sampling locations, we identified putatively adaptive (i.e., candidate) single nucleotide polymorphisms (SNPs) based on genotype–environment associations with seafloor temperature. We calculated various metrics for both neutral and candidate SNPs and compared SCP outcomes with independent metrics and combinations of metrics. Priority areas varied depending on whether neutral or candidate SNPs were used and on the specific metric used. For example, targeting sites with a high frequency of warm-temperature-associated alleles to support persistence under future warming prioritized areas in the southern coastal region. In contrast, targeting sites with high expected heterozygosity at candidate loci to support persistence under future environmental uncertainty prioritized areas in the north. When combining metrics, all scenarios generated intermediate solutions, protecting sites that span latitudinal and thermal gradients. Our results demonstrate that distinguishing between neutral and adaptive markers can affect conservation solutions and emphasize the importance of defining objectives when choosing among various genomic metrics for SCP.