Genetic structure of hybrid mussel populations in the west of Ireland: two hypotheses revisited

In Ireland, mussels on exposed rocky shores constitute an interbreeding mixture of two forms of mussels, the blue mussel, Mytilus edulis, and the Mediterranean mussel, M. galloprovincialis. Results from an Irish study in the 1980s, using partially diagnostic allozyme markers, indicated that mussels higher up the shore were more galloprovincialis-like than those lower down. In this study we set out to test two hypotheses: (a) recruits arriving on the shore are composed of genetically distinct cohorts that settle preferentially at different levels on the shore, and maintain genetic distinctiveness into adulthood; (b) recruits are genetically homogeneous, but once settled they diverge genetically over time, due to within-habitat site specific-selection. The diagnostic Me 15/16 DNA marker was used to analyse the genetic composition of newly-settled spat recruiting to artificial substrates, which were placed at two-week intervals from May–October 2002, on the mid- and low shore areas of two exposed sites in Galway Bay. Adult mussels were also collected on each sampling date. Results did not support the preferential settlement hypothesis, i.e., the genetic composition of primary settlers (≤ 500 μm) was similar between tidal heights and shores. Neither was there evidence of post settlement selective mortality, as adults were genetically similar to settling spat. In spat and adults the frequency of the M. galloprovincialis allele was high (0.56–0.80), due to high frequencies of M. galloprovincialis (> 37%) and hybrid (> 33%) genotypes, and correspondingly low frequencies of the M. edulis genotype (< 11%). Adult mussels from a nearby sheltered estuarine site, while significantly different to exposed shore mussels, still had low frequencies of the M. edulis genotype (< 17%), indicating no apparent advantage for the genotype in this environment. There are indications that the genetic composition of mussels may be changing on the Atlantic coasts of Ireland.     

Simulating forest structure, timber production, and socioeconomic effects in a multi-owner province.

Protecting biodiversity has become a major goal in managing coastal forests in the Pacific Northwest--an area in which human activities have had a significant influence on landscape change. A complex pattern of public and private forest ownership, combined with new regulations for each owner group, raises questions about how well and how efficiently these policies achieve their biodiversity goals. To develop a deeper understanding of the aggregate effect of forest policies, we simulated forest structures, timber production, and socioeconomic conditions over time for the mixture of private and public lands in the 2.3-million-ha Coast Range Physiographic Province of Oregon. To make these projections, we recognized both vegetative complexity at the stand level and spatial complexity at the landscape level. We focused on the two major factors influencing landscape change in the forests of the Coast Range: (1) land use, especially development for houses and cities, and (2) forest management, especially clearcutting. Our simulations of current policy suggest major changes in land use on the margins of the Coast Range, a divergence in forest structure among the different owners, an increase in old-growth forests, and a continuing loss of the structural elements associated with diverse young forests. Our simulations also suggest that current harvest levels can be approximately maintained, with the harvest coming almost entirely from private lands. A policy alternative that retained live trees for wildlife would increase remnant structures but at a cost to landowners (5-7% reduction in timber production). Another alternative that precluded thinning of plantations on federal land would significantly reduce the area of very large diameter (>75 cm dbh) conifer forests 100 years into the future     

Toward estimation of map accuracy without a probability test sample

The time and effort required of probability sampling for accuracy assessment of large-scale land cover maps often means that probability test samples are not collected. Yet, map usefulness is substantially reduced without reliable accuracy estimates. In this article, we introduce a method of estimating the accuracy of a classified map that does not utilize a test sample in the usual sense, but instead estimates the probability of correct classification for each map unit using only the classification rule and the map unit covariates. We argue that the method is an improvement over conventional estimators, though it does not eliminate the need for probability sampling. The method also provides a new and simple method of constructing accuracy maps. We illustrate some of problems associated with accuracy assessment of broad-scale land cover maps, and our method, with a set of nine Landsat Thematic Mapper satellite image-based land cover maps from Montana and Wyoming, USA.     

Density-dependent habitat selection and performance by a large mobile reef fish.

Many exploited reef fish are vulnerable to overfishing because they concentrate over hard-bottom patchy habitats. How mobile reef fish use patchy habitat, and the potential consequences on demographic parameters, must be known for spatially explicit population dynamics modeling, for discriminating essential fish habitat (EFH), and for effectively planning conservation measures (e.g., marine protected areas, stock enhancement, and artificial reefs). Gag, Mycteroperca microlepis, is an ecologically and economically important warm-temperate grouper in the southeastern United States, with behavioral and life history traits conducive to large-scale field experiments. The Suwannee Regional Reef System (SRRS) was built of standard habitat units (SHUs) in 1991-1993 to manipulate and control habitat patchiness and intrinsic habitat quality, and thereby test predictions from habitat selection theory. Colonization of the SRRS by gag over the first six years showed significant interactions of SHU size, spacing, and reef age; with trajectories modeled using a quadratic function for closely spaced SHUs (25 m) and a linear model for widely spaced SHUs (225 m), with larger SHUs (16 standardized cubes) accumulating significantly more gag faster than smaller 4-cube SHUs (mean = 72.5 gag/16-cube SHU at 225-m spacing by year 6, compared to 24.2 gag/4-cube SHU for same spacing and reef age). Residency times (mean = 9.8 mo), indicative of choice and measured by ultrasonic telemetry (1995-1998), showed significant interaction of SHU size and spacing consistent with colonization trajectories. Average relative weight (W(r)) and incremental growth were greater on smaller than larger SHUs (mean W(r) = 104.2 vs. 97.7; incremental growth differed by 15%), contrary to patterns of abundance and residency. Experimental manipulation of shelter on a subset of SRRS sites (2000-2001) confirmed our hypothesis that shelter limits local densities of gag, which, in turn, regulates their growth and condition. Density-dependent habitat selection for shelter and individual growth dynamics were therefore interdependent ecological processes that help to explain how patchy reef habitat sustains gag production. Moreover, gag selected shelter at the expense of maximizing their growth. Thus, mobile reef fishes could experience density-dependent effects on growth, survival, and/or reproduction (i.e., demographic parameters) despite reduced stock sizes as a consequence of fishing.     

Identification of a case of maternal uniparental disomy of chromosome 10 associated with confined placental mosaicism

We report a case of maternal uniparental disomy of chromosome 10 discovered after chorionic villus sampling (CVS). Direct preparations revealed mosaic trisomy 10, while cultured CVS cells, as well as amniotic fluid cells, showed only a normal 46,XY complement. DNA analysis using microsatellite markers showed both chromosomes 10 to have been inherited from the mother. The pregnancy was complicated by polyhydramnios. A phenotypically normal male infant of appropriate size was delivered by Caesarean section at 41 weeks' gestation. Since only the direct preparations showed trisomy 10, this case illustrates the importance of CVS direct preparations in the detection of pregnancies at risk of uniparental disomy (UPD). Although the increased frequency of confined placental mosaicism (CPM) diagnosed when direct preparations are performed has been viewed negatively, identification of both CPM and UPD may have biological and clinical significance for a pregnancy. Even though only a single case of maternal disomy 10 is reported here, the apparently normal phenotype provides evidence that there are no major imprinted loci on chromosome 10 that affect in utero growth and development. However, other potential effects such as mental retardation will require long-term follow-up of this as well as additional cases.     

Distribution of metals in mechanical fractions of soils from a lake catchment in Venezuela

Soil samples were collected from both the surface and at depth from the lowlands around Lake Valencia and from the adjacent mountains. This paper reports results for Al, Ca, Co, Cr, Cu, Fe, K, Mg, Mn, Na, Ni, Pb and Zn in mechanical fractions of the soils. Lowland soils, developed on lacustrine sediments, show a predominance of medium- to fine-grain size fractions whereas the shallow mountain soils show the highest percentage of particles in the coarse to medium fractions. Concentrations of most of the elements investigated increased toward finer particle sizes. The generally higher metal concentrations in lowland soils compared with mountain soils are consistent with release by weathering in the uplands and accumulation in the lowlands. The presence of carbonates derived from ubiquitous shelly material in the lowland soils may explain increases of Ca and Mg in labile fractions. In the lowland area, there is little evidence for the translocation of metals in the soil profiles, despite the high rainfall of a tropical climate, and the calcareous nature of these soils could account for the immobility of metals.     

A comparison of metals in sediments and water in the River Nahr-Ibrahim,Lebanon: 1996 and 1999

Rivers whose basins are underlain by carbonate rocks exhibit high pH, lower desorption of metals and possess high buffering capacity against acidic inputs to the river. The catchment of River Nahr-Ibrahim, Lebanon, is largely underlain by limestone. Compared to neighbouring countries, Lebanon is relatively fortunate since precipitation is high. However, recently a warming in temperature and a drop in precipitation has occurred, thus causing low water levels in rivers. The objective of this study is to investigate the variation of the total metal content (Fe, Mn, Zn, Cu, Pb and Cd) in bed sediments and water of River Nahr-Ibrahim between 1996 and 1999 (two years); and relate these variations to the effect of changes in human activities and/or due to the variations of precipitation rate, temperature and pH of water. Bed load sediments and stream water were collected simultaneously from five sampling sites. Water pH and temperature were determined in situ. Sediment samples were dried at room temperature and sieved; the sediment size <75 m size was retained. Water was analysed for major constituents and trace metals. Metals were extracted from sediments with aqua regia. Metal concentration in water and sediments were determined using ICP-MS technique. Data revealed a drop in metal concentrations (Zn, Cu, Pb, Cd) in sediments at quarry site after its closure. The decrease in precipitation rate, lowering the level of water and the dilution of industrial discharges and decrease in water pH led most probably to the desorption of metals from sediments into the water.     

Environmental Geochemistry and Health

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Environmental Geochemistry and Health