A simple approach to modeling microbial biomass in the rhizosphere

Microorganisms make an important contribution to the degradation of contaminants in bioremediation as well as in phytoremediation. An accurate estimation of microbial concentrations in the soil would be valuable in predicting contaminant dissipation during various bioremediation processes. A simple modeling approach to quantify the microbial biomass in the rhizosphere was developed in this study. Experiments were conducted using field column lysimeters planted with Eastern gamagrass. The microbial biomass concentrations from the rhizosphere soil, bulk soil, and unplanted soil were monitored for six months using an incubation–fumigation method. The proposed model was applied to the field microbial biomass data and good correlation between simulated and experimental data was achieved. The results indicate that plants increase microbial concentrations in the soil by providing root exudates as growth substrates for microorganisms. Since plant roots are initially small and do not produce large quantities of exudates when first seeded, the addition of exogenous substrates may be needed to increase initial microbial concentrations at the start of phytoremediation projects.     

Non-renewable resource prices: Deterministic or stochastic trends?

In this paper, we examine temporal properties of 11 natural resource real price series from 1870 to 1990. Recent studies by Ahrens and Sharma [Trends in natural resource commodity prices: deterministic or stochastic? J. Environ. Econom. Manage. 33(1997)59–74], Berck and Roberts [Natural resource prices: will they ever turn up? J. Environ. Econom. Manage. 31(1996)65–78], and Slade [Grade selection under uncertainty: least cost last and other anomalies, J. Environ. Econom. Manage. 15(1988)189–205], among others, find that many non-renewable resource prices have a stochastic trend. We revisit this issue by employing a Lagrangian multiplier unit root test that allows for two endogenously determined structural breaks with and without a quadratic trend. Contrary to previous research, we find evidence against the unit root hypothesis for all price series. Our findings support characterizing natural resource prices as stationary around deterministic trends with structural breaks. We additionally show that both pre-testing for unit roots with breaks and allowing for breaks in the forecast model can improve forecast accuracy. Overall, the results in this paper are important in both a positive and normative sense; without an appropriate understanding of the dynamics of a time series, empirical verification of theories, forecasting, and proper inference are potentially fruitless.     

Studying crop sequences with CarrotAge,a HMM-based data mining software

We have developed a knowledge discovery system based on high-order hidden Markov models for analyzing spatio-temporal data bases. This system, named CarrotAge , takes as input an array of discrete data – the rows represent the spatial sites and the columns the time slots – and builds a partition together with its a posteriori probability. CarrotAge has been developed for studying the cropping patterns of a territory. It uses therefore an agricultural drench database, named Ter-Uti , which records every year the land-use category of a set of sites regularly spaced. The results of CarrotAge are interpreted by agronomists and used in research works linking agricultural land use and water management. Moreover, CarrotAge can be used to find out and study crop sequences in large territories, that is a main question for agricultural and environmental research, as discussed in this paper.     

Planktivorous damselfish support significant nitrogen and phosphorus fluxes to Mediterranean reefs

In an ecosystem, which is apparently very limited in N and P, the planktivorous damselfish Chromis chromis acts as an important vector in transferring nutrients from the pelagic into littoral food webs. C. chromis are more efficient at absorbing nutrients from their diet than herbivorous Pomacentridae, and excrete more faeces in the spring when their plankton food is more abundant. Faeces released in the water column sink rapidly to the substratum and are consumed by herbivorous and omnivorous fish. Faeces released into night-shelters are rapidly consumed by invertebrate detritivores, and particularly mobile scavengers, such as shrimps and hermit crabs. Night-time accrual of Chromis faeces represents a very important flux of N and P. Such fluxes are predictable in time and space and have thus far been ignored in studies of the western Mediterranean.     

Chromium sorption on grape stalks encapsulated in calcium alginate beads

A novel sorbent based on 2% grape stalk wastes encapsulated in calcium alginate beads was investigated for the removal of Cr(VI) and Cr(III) from aqueous solutions. The sorbent proved to be efficient for chromium removal in both hexavalent and trivalent forms from aqueous solution at pH 3.0. In binary mixtures, the presence in solution of one of the forms enhances the sorption of the other which results in an increase of the amount of total chromium removed. This study suggests that the proposed sorbent can be used for the removal of chromium from wastewaters through a cost-effective and environmentally friendly process.     

Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion

This report documents the extent to which coral colonies show fluctuations in their associations with different endosymbiotic dinoflagellates. The genetic identity of Symbiodinium from six coral species [Acropora palmata (Lamarck), A. cervicornis (Lamarck), Siderastrea siderea (Ellis and Solander), Montastrea faveolata (Ellis and Solander), M. annularis (Ellis and Solander), and M. franksi (Gregory)] was examined seasonally over five years (1998 and 2000–2004) in the Bahamas and Florida Keys at shallow (1 to 4 m) fore-reef/patch reef sites and at deeper fore-reef (12–15 m) locations. Symbionts were identified genetically using denaturing gradient gel electrophoresis (DGGE) fingerprinting of the internal transcribed spacer region 2 (ITS2) of ribosomal RNA gene loci. Repetitive sampling from most labeled colonies from the Bahamas and the Florida Keys showed little to no change in their dominant symbiont. In contrast, certain colonies of M. annularis and M. franksi from the Florida Keys exhibited shifts in their associations attributed to recovery from the stresses of the 1997–1998 El Niño southern oscillation (ENSO) event. Over several years, a putatively stress-tolerant clade D type of Symbiodinium was progressively replaced in these colonies by symbionts typically found in M. annularis and M. franksi in Florida and at other Caribbean locations. Greater environmental fluctuations in Florida may explain the observed changes among some of the symbioses. Furthermore, symbiotic associations were more heterogeneous at shallow sites, relative to deep sites. The exposure to greater environmental variability near the surface may explain the higher symbiont diversity found within and between host colonies.     

Collective decisions in ants when foraging under crowded conditions

In this paper we examine the effect of crowding on the selection of a path in the mass-recruiting ant Lasius niger. In our experiment, ants had to go from their nest to a food source by crossing a diamond-shaped bridge, giving the choice between two paths. Two types of bridges were used: the first had two branches of equal length but different width while the second had two branches of different length and width. Experiments at high traffic volume always ended up with the selection of the wider branch, even if it was longer. This result shows that overcrowding on the narrow branch plays an essential role in the mechanism underlying the choice of route in ants. A mathematical model was developed to evaluate the importance of two mechanisms that could account for this result. The first is based on the difference in travel duration between the two paths. The second is based on the repulsive interactions between workers making head-on encounters. The model shows that travel duration per se is not sufficient to explain path choice. Rather, it is the interplay between trail following behaviour and repulsive interactions that allows ants to choose the path that minimizes their travel time. When choosing a path ants thus prefer to trade time against energy. Our results demonstrate that any environmental constraint that alters the dynamics of trail recruitment can lead to the emergence of adaptive foraging decisions without any explicit coding of information by the foragers at the individual level.     

Flow Dynamics in Eccentrically Rotating Flasks Used for Dispersant Effectiveness Testing

The evaluation of dispersant effectiveness used for oil spills is commonly done using tests conducted in laboratory flasks. We used a Hot Wire Anemometer (HWA) to characterize mixing dynamics in the Swirling Flask (SF) and the Baffled Flask (BF), the latter is being considered by the EPA to replace the prior to test dispersant effectiveness in the laboratory. Five rotation speeds of the orbital shaker carrying the flasks were considered, Ω = 50, 100, 150, 175 and 200 rpm. The radial and azimuthal water speeds were measured for each Ω. It was found that the flow in the SF is, in general, two-dimensional changing from horizontal at low Ω to axi-symmetric at high Ω. The flow in the BF appeared to be three-dimensional at all rotation speeds. This indicates that the BF is more suitable for representing the (inherently) 3-D flow at sea. In the SF, the speeds and energy dissipation rates ɛ increased gradually as the rotation speed increased. Those in the BF increased sharply at rotation speeds greater than 150 rpm. At 200 rpm, the Kolmogorov scale (i.e., size of smallest eddies) was about 250 and 50 μm in the SF and BF, respectively. Noting that the observed droplet sizes of dispersed oils range from 50 to 400 μm (hence most of it is less than 250 μm), one concludes that the mixing in the SF (even at 200 rpm) is not representative of the vigorous mixing occurring at sea.     

Reproduction in Balanus amphitrite Darwin (Cirripedia: Thoracica): influence of temperature and food concentration

Balanus amphitrite, an acorn barnacle, is distinctly euryhaline, eurythermal and a dominant fouling organism found in warm and temperate waters throughout the world. In this study, the influence of temperature and food concentration on the reproductive biology of this species collected from a tropical habitat was evaluated. Adult barnacles were maintained at 20, 25 and 30°C temperatures at different concentrations of food (50, 100, 150 and 200 Artemia ind⁻¹ day⁻¹). In this previously believed obligatory cross-fertilizing hermaphrodite, self-fertilization was observed. The rise in temperature from 20 to 30°C resulted in a longer interbreeding interval (6–7 days, 200 Artemia ind⁻¹ day⁻¹; 11–13 days, 50 Artemia ind⁻¹ day⁻¹). Computed carbon gained through feeding during the interbreeding interval indicated an inverse relationship to the temperature. At 20°C, although a greater amount of carbon was gained through feeding, the numbers of larvae produced were fivefold less when compared to those raised at 30°C. At 20°C, 2.3 μg C was required to produce a single larva, whereas at 30°C it was 0.4 μg C. A rise in rearing temperature also influenced the molting rate positively. Observations on temporal variation in the gonad development of this species in a tropical coastal environment influenced by the monsoons indicated gonad development to be positively related to chlorophyll a concentration.     

Risk assessment of heavy metal contamination in shrimp farming in Mai Po Nature Reserve, Hong Kong

An ecological survey was carried out to determine the sediment concentrations of nutrients and heavy metals and bioaccumulation of heavy metals in fish and shrimp including tilapia (Oreochromis mossambicus×O. nilotica), grey mullet (Mugil cephalus), gei wai shrimp (Metapenaeus ensis) and caridean shrimp (Macrobrachium nipponensis) in the traditional tidal shrimp ponds (gei wais) of Mai Po Nature Reserve, Hong Kong. The sediments collected from the landward sites contained higher nutrient contents, as well as zinc (Zn), chromium (Cr), copper (Cu), nickel (Ni) and cadmium (Cd) than those collected from the seaward sites, but vice versa for lead (Pb) and mercury (Hg). However, the concentrations of all metals were exceptionally high in the two sites located outside the reserve, suggesting that waters from Deep Bay might be the possible source of metal contamination affecting the reserve. All metals studied seemed to accumulate in the viscera of fish. Body size was the determining factor for the accumulation of heavy metals in caridean shrimp and gei wai shrimp but not fish. Concentrations of the metals studied in tissues of grey mullet and gei wai shrimp were found to be safe for human consumption. Concentrations of Cr in tilapia whole body (0.68–1.10 mg kg⁻¹ wet weight) were close to or over the guideline value of 1 mg kg⁻¹ set by the Food Adulteration (Metallic Contamination) Regulations of Hong Kong. Tilapia flesh and small caridean shrimp collected from gei wais were contaminated by Cr and Pb but still fit for human consumption. Caution is required if large caridean shrimp is to be consumed in large amounts continuously because the concentration of Pb exceeded the maximum permitted concentration (6 mg kg⁻¹). The rather high Cr concentrations in tilapia whole body should not be overlooked as the fish will serve as a food source for migratory birds visiting the site.