Substrate concentration and enzyme allocation can affect rates of microbial decomposition

A large proportion of the world's carbon is stored as soil organic matter (SOM). However, the mechanisms regulating the stability of this SOM remain unclear. Recent work suggests that SOM may be stabilized by mechanisms other than chemical recalcitrance. Here, we show that the mineralization rate of starch, a plant polymer commonly found in litter and soil, is concentration dependent, such that its decomposition rate can be reduced by as much as 50% when composing less than approximately 10% of SOM. This pattern is largely driven by low activities of starch-degrading enzymes and low inducibility of enzyme production by microbial decomposers. The same pattern was not observed for cellulose and hemicellulose degradation, possibly because the enzymes targeting these substrates are expressed at constitutively high levels. Nevertheless, given the heterogeneous distribution of SOM constituents, our results suggest a novel low-concentration constraint on SOM decomposition that is independent of chemical recalcitrance. These results may help explain the stability of at least some SOM constituents, especially those that naturally exist in relatively low concentrations in the soil environment.     

Calculating ecological carrying capacity of shellfish aquaculture using mass-balance modeling: Narragansett Bay, Rhode Island

Increasing growth in the aquaculture industry demands ecosystem-based techniques for management if that growth is to be ecologically sustainable and promote equity among users of the ecosystems in which it occurs. Models of carrying capacity can be used to responsibly limit the growth of aquaculture in increasingly crowded coastal areas. Narragansett Bay, Rhode Island, USA is one such crowded coastal region experiencing a rapid increase in bivalve aquaculture. An ecosystem mass-balance model was used to calculate the ecological carrying capacity of bivalve aquaculture. Cultured oyster biomass is currently at 0.47 t km⁻² and could be increased 625 times without exceeding the ecological carrying capacity of 297 t km⁻². This translates to approximately 38,950 t of harvested cultured oysters annually which is 4 times the total estimated annual harvest of finfish. This potential for growth is due to the high primary productivity and large energy throughput to detritus of this ecosystem. Shellfish aquaculture has potential for continued growth and is unlikely to become food limited due, in part, to the large detritus pool.     

Response of “Alamo” switchgrass tissue chemistry and biomass to nitrogen fertilization in West Tennessee,USA

Switchgrass (Panicum virgatum) is a perennial, warm-season grass that has been identified as a potential biofuel feedstock over a large part of North America. We examined above- and belowground responses to nitrogen fertilization in “Alamo” switchgrass grown in West Tennessee, USA. The fertilizer study included a spring and fall sampling of 5-year old switchgrass grown under annual applications of 0, 67, and 202 kg N ha^?1 (as ammonium nitrate). Fertilization changed switchgrass biomass allocation as indicated by root:shoot ratios. End-of-growing season root:shoot ratios (mean ± SE) declined significantly (P ≤ 0.05) at the highest fertilizer nitrogen treatment (2.16 ± 0.08, 2.02 ± 0.18, and 0.88 ± 0.14, respectively, at 0, 67, and 202 kg N ha^?1). Fertilization also significantly increased above- and belowground nitrogen concentrations and decreased plant C:N ratios. Data are presented for coarse live roots, fine live roots, coarse dead roots, fine dead roots, and rhizomes. At the end of the growing season, there was more carbon and nitrogen stored in belowground biomass than aboveground biomass. Fertilization impacted switchgrass tissue chemistry and biomass allocation in ways that potentially impact soil carbon cycle processes and soil carbon storage.     

Tropical coastal habitats as surrogates of fish community structure, grazing, and fisheries value

Habitat maps are frequently invoked as surrogates of biodiversity to aid the design of networks of marine reserves. Maps are used to maximize habitat heterogeneity in reserves because this is likely to maximize the number of species protected. However, the technique's efficacy is limited by intra-habitat variability in the species present and their abundances. Although communities are expected to vary among patches of the same habitat, this variability is poorly documented and rarely incorporated into reserve planning. To examine intra-habitat variability in coral-reef fishes, we generated a data set from eight tropical coastal habitats and six islands in the Bahamian archipelago using underwater visual censuses. Firstly, we provide further support for habitat heterogeneity as a surrogate of biodiversity as each predefined habitat type supported a distinct assemblage of fishes. Intra-habitat variability in fish community structure at scales of hundreds of kilometers (among islands) was significant in at least 75% of the habitats studied, depending on whether presence/absence, density, or biomass data were used. Intra-habitat variability was positively correlated with the mean number of species in that habitat when density and biomass data were used. Such relationships provide a proxy for the assessment of intra-habitat variability when detailed quantitative data are scarce. Intra-habitat variability was examined in more detail for one habitat (forereefs visually dominated by Montastraea corals). Variability in community structure among islands was driven by small, demersal families (e.g., territorial pomacentrid and labrid fishes). Finally, we examined the ecological and economic significance of intra-habitat variability in fish assemblages on Montastraea reefs by identifying how this variability affects the composition and abundances of fishes in different functional groups, the key ecosystem process of parrotfish grazing, and the ecosystem service of value of commercially important finfish. There were significant differences in a range of functional groups and grazing, but not fisheries value. Variability at the scale of tens of kilometers (among reefs around an island) was less than that among islands. Caribbean marine reserves should be replicated at scales of hundreds of kilometers, particularly for species-rich habitats, to capture important intra-habitat variability in community structure, function, and an ecosystem process.     

Conservation resource allocation,small population resiliency,and the fallacy of conservation triage

Some conservation prioritization methods are based on the assumption that conservation needs overwhelm current resources and not all species can be conserved; therefore, a conservation triage scheme (i.e., when the system is overwhelmed, species should be divided into three groups based on likelihood of survival, and efforts should be focused on those species in the group with the best survival prospects and reduced or denied to those in the group with no survival prospects and to those in the group not needing special efforts for their conservation) is necessary to guide resource allocation. We argue that this decision-making strategy is not appropriate because resources are not as limited as often assumed, and it is not evident that there are species that cannot be conserved. Small population size alone, for example, does not doom a species to extinction; plants, reptiles, birds, and mammals offer examples. Although resources dedicated to conserving all threatened species are insufficient at present, the world's economic resources are vast, and greater resources could be dedicated toward species conservation. The political framework for species conservation has improved, with initiatives such as the UN Sustainable Development Goals and other international agreements, funding mechanisms such as The Global Environment Facility, and the rise of many nongovernmental organizations with nimble, rapid-response small grants programs. For a prioritization system to allow no extinctions, zero extinctions must be an explicit goal of the system. Extinction is not inevitable, and should not be acceptable. A goal of no human-induced extinctions is imperative given the irreversibility of species loss.     

The oxidation of octanoic acid by cultured amniotic fluid cells: The effect of cell type and passage number

We have measured the rate of oxidation of [1⁻¹⁴C]octanoate in cultured amniotic fluid (AF) cells at various passages and in AF cell lines with different clonal morphology. It is possible that both the passage number and the cell type may influence the outcome of prenatal diagnosis of fatty acid oxidation defects using this technique. We found that there was no significant difference between the three major AF cell types (epithelial, large epithelial, and fibroblast) when analysed at identical passage number but there was a significant reduction in octanoate oxidation in all cell types with increasing passage. For reliable prenatal diagnosis, cell lines of similar low passage number should be used.     

Molecular relationships and species divergence among <Emphasis Type="Italic">Phragmatopoma</Emphasis> spp. (Polychaeta: Sabellaridae) in the Americas

Phragmatopoma spp. are marine, reef-building polychaetes that inhabit the intertidal and shallow subtidal zones of both coasts of the Americas. Phragmatopoma californica is found in the Pacific Ocean along the California coast south to Mexico, while Phragmatopoma caudata inhabits the Caribbean islands and Atlantic Ocean from the Florida coast south to Brazil. Although apparently geographically isolated, P. californica and P. caudata have been found to interbreed (Pawlik 1988a) and thus their specific taxonomic relationship has been unclear. In this study, two genes, cytochrome c oxidase subunit I (COI) and the first internal transcribed spacer region (ITS-1), were sequenced to assess the specific status of P. californica and P. caudata as well as Phragmatopoma virgini. Comparison of sequences revealed that samples of P. californica shared no COI haplotypes or ITS-1 sequences with P. caudata. Phylogenetic analyses, including maximum parsimony and Bayesian methods, clustered each species in separate, well-supported clades with genetic distances between them being greater than between either contested species or the uncontested, valid species, P. virgini. Thus, the molecular data support that P. californica and P. caudata are separate species. However, the sample of individuals of P. virgini included one genetically divergent individual, whose morphology was found to match that of a species formerly recognized as P. moerchi but since synonymized with P. virgini. Divergences among lineages were dated using the COI sequences, after adjustment for non-clock-like behavior. Consequently, we suggest that P. virgini and P. caudata are sister taxons and that P. californica diverged from the P. virgini/P. caudata clade ∼5.7 mya with P. virgini diverging from P. caudata ∼3 mya.     

Modeling the Effects of Habitat Fragmentation on Source and Sink Demography of Neotropical Migrant Birds

Many songbird populations in the midwestem United States are structured as a network of sources and sinks that are linked by dispersal. We used a modeling approach to examine explicitly how populations respond to incremental fragmentation of source habitat and how this response may vary depending upon two life-history attributes: fidelity to natal habitat type and reproductive strength of the source. Fragmentation of source habitat led to a predictable decline in population for both attributes examined, but the manner in which populations declined varied depending upon the reproductive strength of the source and the level of fidelity. When the source was weak and produced few excess individuals, fragmentation of source habitats resulted in a predictable and parallel population decline of adults in both the source and the sink. In this situation high fidelity to natal habitats was important for maintenance of population size and structure. Low fidelity to weak sources resulted in population extinction; populations experienced a demographic cost by dispersing from high quality source habitat to low quality sink habitat. In contrast, when the source was strong and produced many excess individuals, fragmentation of the source led to population declines in both the source and the sink, but this decline was more abrupt in sink habitats. When the source was strong and produced a large excess of individuals, nonfidelity to natal habitats had little effect on metapopulation size and structure.