Fate of prions in soil: a review

Prions are the etiological agents of transmissible spongiform encephalopathies (TSSEs), a class of fatal neurodegenerative diseases affecting humans and other mammals. The pathogenic prion protein is a misfolded form of the host-encoded prion protein and represents the predominant, if not sole, component of the infectious agent. Environmental routes of TSE transmission areimplicated in epizootics of sheep scrapie and chronic wasting disease (CWD) of deer, elk, and moose. Soil represents a plausible environmental reservoir of scrapie and CWD agents, which can persist in the environment for years. Attachment to soil particles likely influences the persistence and infectivity of prions in the environment. Effective methods to inactivate TSE agents in soil are currently lacking, and the effects of natural degradation mechanisms on TSE infectivity are largely unknown. An improved understanding of the processes affecting the mobility, persistence, and bioaviailability of prions in soil is needed for the management of TSE-contaminated environments.     

Influence of Sampling Effort on the Estimated Richness of Road-Killed Vertebrate Wildlife

Road-killed mammals, birds, and reptiles were collected weekly from highways in southern Brazil in 2002 and 2005. The objective was to assess variation in estimates of road-kill impacts on species richness produced by different sampling efforts, and to provide information to aid in the experimental design of future sampling. Richness observed in weekly samples was compared with sampling for different periods. In each period, the list of road-killed species was evaluated based on estimates the community structure derived from weekly samplings, and by the presence of the ten species most subject to road mortality, and also of threatened species. Weekly samples were sufficient only for reptiles and mammals, considered separately. Richness estimated from the biweekly samples was equal to that found in the weekly samples, and gave satisfactory results for sampling the most abundant and threatened species. The ten most affected species showed constant road-mortality rates, independent of sampling interval, and also maintained their dominance structure. Birds required greater sampling effort. When the composition of road-killed species varies seasonally, it is necessary to take biweekly samples for a minimum of one year. Weekly or more-frequent sampling for periods longer than two years is necessary to provide a reliable estimate of total species richness.     

Interannual fluctuations in acoustic biomass estimates and in landings of small pelagic fish populations in relation to hydrology in the Strait of Sicily

The main results of research work carried out since 1998 with regard to the application of hydro-acoustic technologies for the evaluation of biomass and distribution of small pelagic fish species off the southern coast of Sicily are presented, taking into account information from hydrology and from ecology of the fish populations targeted. The biomass estimates and the population-density charts presented concern the two main species, i.e. sardine Sardina pilchardus (Walbaum, 1792) and anchovy Engraulis encrasicolus (Linnaeus, 1758). Both the sardine and anchovy populations experienced large inter-annual fluctuations, with biomass estimates ranging from 6000 to over 36,000 tonnes (t) (sardine) and from about 7000 to 23,000 t (anchovy). Acoustic estimates are largely consistent with landings recorded in Sciacca (the main fishing port for small pelagic species in the study area) during the year following the evaluation surveys. In addition, trends in sardine and anchovy biomass estimates appears to be negatively correlated with the mean sea surface temperature calculated over the time intervals January-September (sardine) and June-November (anchovy) of the preceding year, which correspond to larval and juvenile growth periods of target species. Observed patterns would suggest the importance of enrichment processes relevant to the survival of early stages, so determining recruitment success and finally higher population sizes.     

Estimation of biogas produced by the landfill of Palermo, applying a Gaussian model

In this work, a procedure is suggested to assess the rate of biogas emitted by the Bellolampo landfill (Palermo, Italy), starting from the data acquired by two of the stations for monitoring meteorological parameters and polluting gases. The data used refer to the period November 2005-July 2006. The methane concentration, measured in the CEP suburb of Palermo, has been analysed together with the meteorological data collected by the station situated inside the landfill area. In the present study, the methane has been chosen as a tracer of the atmospheric pollutants produced by the dump. The data used for assessing the biogas emission refer to night time periods characterized by weak wind blowing from the hill toward the city. The methane rate emitted by the Bellolampo dump has been evaluated using a Gaussian model and considering the landfill both as a single point source and as a multiple point one. The comparison of the results shows that for a first approximation it is sufficient to consider the landfill of Palermo as a single point source. Starting from the monthly percentage composition of the biogas, estimated for the study period, the rate of biogas produced by the dump was evaluated. The total biogas produced by the landfill, obtained as the sum of the emitted component and the recovered one, ranged from 7519.97 to 10,153.7m3/h. For the study period the average monthly estimations of biogas emissions into the atmosphere amount to about 60% of the total biogas produced by the landfill, a little higher than the one estimated by the company responsible for the biogas recovery plant at the landfill.     

Natural and anthropogenic hydrocarbon inputs to sediments of Patos Lagoon Estuary, Brazil

The Patos Lagoon Estuary, southern Brazil, is an area of environmental interest not only because of tourism, but also because of the presence of the second major port of Brazil, with the related industrial and shipping activities. Thus, potential hydrocarbon pollution was examined in this study. Sediment samples were collected at 10 sites in the estuary, extracted, and analyzed by GC-FID and GC-MS for composition and concentration of the following organic geochemical markers: normal and isoprenoid alkanes, petroleum biomarkers, linear alkylbenzenes (LABs), and polycyclic aromatic hydrocarbons (PAHs). The total concentrations varied from 1.1 to 129.6 microg g(-1) for aliphatic hydrocarbons, from 17.8 to 4510.6 ng g(-1) for petroleum biomarkers, from 3.2 to 1601.9 ng g(-1) for LABs, and from 37.7 to 11,779.9 ng g(-1) for PAHs. Natural hydrocarbons were mainly derived from planktonic inputs due to a usual development of blooms in the estuary. Terrestrial plant wax compounds prevailed at sites located far from Rio Grande City and subject to stronger currents. Anthropogenic hydrocarbons are related to combustion/pyrolysis processes of fossil fuel, release of unburned oil products and domestic/industrial waste outfalls. Anthropogenic hydrocarbon inputs were more apparent at sites associated with industrial discharges (petroleum distributor and refinery), shipping activities (dry docking), and sewage outfalls (sewage). The overall concentrations of anthropogenic hydrocarbons revealed moderate to high hydrocarbon pollution in the study area.     

Nitrogen multitemporal monitoring through mosses in urban areas affected by mud volcanoes around Mt. Etna, Italy

Nitrogen emissions were assessed by using mosses as bioindicators in a densely inhabited area affected by mud volcanoes. Such volcanoes, locally called Salinelle, are phenomena that occur around Mt. Etna (Sicily, Italy), and are interpreted as the surface outflow of a hydrothermal system located below Mt. Etna, which releases sedimentary fluids (hydrocarbons and Na-Cl brines) along with magmatic gases (mainly CO₂ and He). To date, N emissions from such mud volcanoes have been only quantitatively assessed, and no biomonitoring campaigns are reported about the cumulative effects of these emissions. This study analyzed N concentrations in moss, water and soil samples, collected in a 4-year monitoring campaign. The bryophyte Bryum argenteum, a species widely adopted in surveys of atmospheric pollution, was used as a biological indicator. N concentrations in biomonitors showed relatively low values in the study sites. However, the results of this study suggest that N emissions from Salinelle may have an impact on surrounding ecosystems because N values in moss and water showed a significant correlation. N oxides, in particular, contribute to acidification of ecosystems, thus multitemporal biomonitoring is recommended, especially in those areas where N emitting sources are anthropogenic and natural.     

Recognition of water masses according to geochemical signatures in the Central Mediterranean sea: Y/Ho ratio and rare earth element behaviour

This study reports the results of geochemical investigations carried out in the Strait of Sicily (Central Mediterranean Sea) during the oceanographic cruise BANSIC 2000, focusing on the area around the Pantelleria Island. We evaluate the interface processes between dissolved phase and suspended particulate matter in the water columns on the basis of Y/Ho ratio and rare earth elements and yttrium distributions that are suitable to trace the occurrence of different water layers in Central Mediterranean Area. The main source of trace elements to the sea water system was recognized in the atmospheric fallout, while different scavenging mechanisms among Y and rare earth elements occur. Cation exchange at the dissolved phase-suspended media interface is driven by their external electronic configurations as monitored through the Y/Ho ratios, shape, and amplitude of the tetrad effects calculated along the water columns. The shape and amplitude of the tetrad effects in bottom waters suggest that the preferential Y scavenging from deep water layers depends on the hydrothermal activity in the seafloor. Here, Y is surface-complexed through the formation of inner-sphere complexes; Ho and other heavy rare earth elements are sorbed onto suspended particulate matter surfaces as weak outer-sphere complexes; these materials have a montmorillonite like nature; and preferential incorporation medium rare earth elements in crystal structures of biogenic carbonates is suggested by the relationship between the Eu anomaly and the nutrient contents of water masses.     

Determination of total organic halogen (TOX) in humic acids after microwave-induced combustion

Chemically chlorinated organic matter as well as natural background humic acids contain significant amounts of organically bound halogens that must be determined for assessment of environmental pollution. In this work the use of ion chromatography (IC) and inductively coupled plasma mass spectrometry (ICP-MS) is proposed for the determination of total organic Cl, Br and I concentration in humic acids extracted from various forest soil horizons after a single digestion by microwave-induced combustion (MIC). Samples were pressed as pellets and combusted using 20 bar of oxygen and ammonium nitrate solution as igniter. Analytes were absorbed in diluted alkaline solution (50 mM (NH₄)₂CO₃) and a reflux step was applied after combustion to improve analyte recoveries (5 min, microwave power of 1400 W). The accuracy was evaluated using certified reference materials (CRM) and spiked samples. Using MIC the agreement with CRM values and spike recoveries was higher than 97% for all analytes. As an advantage over conventional procedures, using MIC it was possible to digest up to eight samples in only 25 min, obtaining a single solution suitable for all halogens determination in humic acids samples by different techniques (IC and ICP-MS). The limit of detection (3σ) for Cl, Br and I obtained by IC was 1.2, 2.5 and 4.3 μg g⁻¹ and by ICP-MS it was 1.4, 0.03 and 0.002 μg g⁻¹, respectively.