Measuring copepod naupliar abundance in a subtropical bay using quantitative PCR

Copepod nauplii are important in plankton food web dynamics, but limited information is available about their ecology due to methodological challenges. Reported here is a new molecular method that was developed, optimized, and tested in laboratory and field samples that uses quantitative PCR (qPCR) to identify and estimate the abundance of nauplii of the planktonic copepod, Parvocalanus crassirostris. The overall approach included collection of bulk zooplankton samples in the field, size fractionation to create artificial cohorts of relatively few developmental stages, obtaining DNA copy number for each size fraction by qPCR amplification of a target gene region, and estimation of the number of animals in each fraction through application of known DNA copy number across developmental stage. Method validation studies found that our qPCR-based approach has comparable accuracy to microscope-based counts of early developmental stages. Naupliar abundance estimates obtained using the two methods on cultured populations were similar; the regression of qPCR estimates on microscope-based counts resulted in a nearly 1:1 ratio (slope = 1.09). The qPCR-based method is superior to traditional identification and quantification methods for nauplii due to its higher taxonomic resolution, sensitive detection over a range of DNA quantities, and relatively high throughput sample processing.     

Metal Concentration in Oyster,Crassostrea Gigas,and Sediment in Ann-Ping Mariculture Ground,Taiwan

Abstract

This study was to assess the metal contamination in oyster tissue grown in the Ann-ping mariculture ground in Taiwan. the information generated from this work also revealed general metal pollution problem for Taiwan's oyster farmers. Oysters, Crassostrea gigas, and surficial sediments collected from ten locations in Ann-ping mariculture ground in Taiwan for metals concentration (Cu, Zn, Pd, Cd, Fe and Mn) were performed. Analytical results indicated that the yearly averaged oyster copper concentrations (μg g^?1, wet weight) in oyster soft parts from Ann-ping increased from 21.3±4.1 in 1993; 24.1±6.8 in 1994; 36.8±11.9 in 1995 to 43.9±23.1 μg g^?1, wet weight, in the 1996 raising season. the mean oyster copper concentration reached a level of 50 μg g^?1, wet weight, in December 1996. This increasing trend of metal concentration in oyster tissue indicates a potential pollution source which may pose a potential disaster as green oyster incidence, which occurred on the Charting coast in 1986, in Taiwan. Sediment samples in Ann-ping mariculture ground were also collected and examined. the seasonal variation of the copper concentration in surficial sediment from Ann-ping did not show an increasing trend as observed in oyster tissue.     

Ecotoxicological effects of Trichloroethene upon plankton

A case study in an experimental pond was performed to evaluate the ecotoxic effects of Trichloroethene (TRI) upon the population density and productivity of phyto‐ and zooplankton. TRI was continuously released into two pond enclosures over 11 weeks (mean concentrations 1.5 and 7.5 mg/l). The chronic chemical treatment showed distinctive toxic influences upon the biota. Following the high TRI concentration, the phytoplankton density slightly increased; the productivity per single cells, however, was significantly reduced compared to the controls and the low TRI concentration. Cryptophyceae were the most sensitive algae taxa. The density and reproductivity of Daphniae and Phyllopodae decreased by the high TRI concentration. Most of the Rotatoriae were not negatively influenced. With increasing TRI concentrations two different bacteria forms showed a mass development. Small amounts of Trichloroacetic acid were detected in both enclosures as a conversion product of TRI (～3 μg/l after 80 days treatment).     

Metabolism of beta-hexachlorocyclohexane-14C in rats following low dosing in the daily diet

beta-Hexachlorocyclohexane-14C (1.5 ppm) was administered in the diet to rats for one week. During the elimination phase three therapeutic agents were fed to enhance the clearance. Renal and fecal excreted radioactive products were collected for 8 weeks and extracted. Although significant differences in the total excreted amount of radioactivity were registered between controls and treated rats, there were no quantitative differences in the extractability of the excreta and no differences in the chemical nature of metabolites found. Radioactivity in urine consisted to 100% of conversion products, about 30% of which were unextractable residues. In the organic soluble fraction the 2,4,6-trichlorophenol was the major metabolite in urine and the only metabolite detected in feces. Minor conversion products of beta-HCH in urine were a trichlorohydroxyme-thoxybenzene, a dichlorophenol and a trace of a tetrachlorocyclohexane-isomer.     

Lessons for successful participatory watershed modeling: A perspective from modeling practitioners

Participatory modeling is the process of incorporating stakeholders, often including the public, and decision makers into an otherwise purely analytic modeling process to support decisions involving complex natural resources questions. Participatory modeling is particularly compatible with the rising focus on integrated water resources management, which incorporates systems theory and aims to protect and improve water resources while considering economic and social concerns in the community. In this article, we present a series of lessons based on experience working with stakeholder groups to develop watershed and water quality models to address water resource issues in Maryland, Vermont, Utah, and Virginia. We believe these lessons in participatory modeling, discussed from our perspective as scientists and modelers engaged in applied watershed issues, can help to achieve successful participatory modeling efforts elsewhere. The lessons relate to stakeholder engagement, modeling tools, model development and calibration, scenario testing, and applying results to management decisions.     

Soil heavy metal content on the hillslope region of Rio de Janeiro,Brazil: reference values

The increasing concern regarding the preservation of soil quality suggests the adoption of quality reference values as a first step in environmental monitoring actions. In this context, the objective of this study was to establish soil quality reference values for Al, Zn, Mn, Cd, Fe, Pb, Ni, Cr, and Cu and to correlate several soil properties with the occurrence of these elements in the hillslope region of Rio de Janeiro State. Sixty-two samples were collected at depths of 0–20 and 20–40 cm and analyzed using the USEPA method 3051A. After clustering analysis, the samples were separated into three groups. Classification functions were obtained based on the variables pH - Mg - Fe - Mn, i.e., the variables that were best related to heavy metal content. We determined to establish the quality reference values for the 75th percentile of the three groups. The relief forms of the area, which facilitate the transport of soil fine-particle fractions and accumulation in lowlands, were revealed to be one of most important factors in understanding the distribution of soil heavy metals.     

From Obstructionism to Communication: Local,National and Transnational Dimensions of Contestations on the Swedish Wolf Cull Controversy

Two obstructionist ways of doing politics on contentious wildlife management issues currently reflect a legitimacy deficit in official channels for public engagement. The first is that of a pernicious “direct-action” politics, in the form of resort by hunters in rural Sweden to illegal killings of protected wolves over whose policy they contest. The second obstruction is when environmental non-governmental organizations routinely file appeals in higher-level courtrooms contesting democratically mandated wolf cull decisions. Although markedly different when it comes to their categorically deliberative values as well as fidelity to the law, we argue both extra-legal and the litigative phenomena reflect disenfranchisement with the participation channels in which such controversies may be resolved through a public dialogue. We also argue that both possess negative systemic deliberative value inasmuch as they frustrate goals of reaching deliberative consensus, by contributing to a stalled public communication on wolf management. We address this deficit by appeal to recent developments in the theory and practice of mini-publics that promote both the categorical and systemic deliberative value of channeling contestation. In particular, we appeal to a novel conception of hunter-initiated, but citizen controlled, mini-publics as a vehicle for re-starting stalled public communication on wolf conservation.     

Improved oxidative stability of biodiesel via alternative processing methods using cottonseed oil

Biodiesel from waste cooking oil (WCO) requires antioxidants to meet oxidation stability specifications set forth in ASTM D6751 or EN 14214. In contrast, unrefined cottonseed oil (CSO), containing tocopherols and gossypol, produces biodiesel of higher oxidation stability. However, only a portion of these CSO endogenous antioxidants are suspected to be retained in biodiesel. Because the economics of biodiesel manufacturing rely upon inexpensive sources of triglycerides, emphasis was placed on developing improved alternative processing methods where WCO was the main source of methyl esters (WCOME) and CSO was used as a supplemental source of triglycerides and antioxidants in a 4:1 ratio. This study compared four processing methods for their ability to produce biodiesel of increased oxidative stability prepared from a 4:1 ratio of WCO:CSO. Two novel processing methods developed for this study utilise solvent properties of fatty acid methyl esters and glycerol to avoid additional chemical inventory for biodiesel processors. This study concludes that the two new processing methods resulted in biodiesel that had statistically significant improved oxidation stability when compared to two common industrial processing methods. Another significant finding is that high-shear homogenisation during transesterification reduced reaction time from the published one hour to 16 minutes.     

Baseline ambient gaseous ammonia concentrations in the Four Corners area and eastern Oklahoma, USA

Ambient ammonia monitoring using Ogawa passive samplers was conducted in the Four Corners area and eastern Oklahoma, USA during 2007. The resulting data will be useful in the multipollutant management of ozone, nitrogen oxides, and visibility (atmospheric regional haze) in the Four Corners area, an area with growing oil/gas production and increasing coal-based power plant construction. The passive monitoring data also add new ambient ammonia concentration information for the U.S. and will be useful to scientists involved in present and future visibility modeling exercises. Three week integrated passive ammonia samples were taken at five sites in the Four Corners area and two sites in eastern Oklahoma from December, 2006 through December, 2007 (January, 2008 for two sites). Results show significantly higher regional background ammonia concentrations in eastern Oklahoma (1.8 parts per billion (ppb) arithmetic mean) compared to the Four Corners area (0.2 ppb arithmetic mean). Annual mean ammonia concentrations for all Four Corners area sites for the 2007 study ranged from 0.2 ppb to 1.5 ppb. Peak ambient ammonia concentrations occurred in the spring and summer in both areas. The passive samplers deployed at the Stilwell, Oklahoma site compared favorably with other passive samplers and a continuous ammonia monitoring instrument.