Feasibility of weeds-based compost-cultivated Agaricus bisporus北大核心CSCD

Making full use of local weed resources to produce Agaricus bisporus is of great importance in reducing production costs and protecting the environment. In this paper, three trial experiments were conducted on the basis of weed diversity investigation around the Miyun Reservoir and the adjustment of formulation and technology in the industrial production of A. bisporus. Compost samples from different phases of the composting process and at various cultivation stages were collected for the determination of their physical-chemical properties, lignocellulose content, lignocellulolytic enzyme activities, and bacterial communities enrichment by 16S rRNA gene sequencing. The yield of mushrooms in each different trial was also calculated. The results showed several types of reservoir weeds with high, thick and hard stems. The saturated moisture of weeds was 76.78% after baling. The water content, carbon content, and C/N ratio of the samples decreased gradually during composting, but had little change during cultivation. The nitrogen content decreased at the end of phase I and increased at the end of phase II. During composting, the loss rates of hemicellulose and cellulose were both between 40% and 60%, and the loss rate of lignin was between 20% and 30%. During cultivation, instead, the loss rate of lignin was between 16% and 21%. The changes in the content of cellulose and hemicellulose of compost were consistent with that of the activity of the related degradation enzymes. A total of 432 595 valid sequences were obtained by Illumina sequencing for the samples derived from the three composting trials, and the average length of the sequences was 441 bp. Taxonomic analysis showed that the dominant bacteria were Prevotella (phylum Bacteroidetes), Bacillus (phylum Firmicutes), Thermus, Truepera, and Caldicoprobacter (phylum Deinococcus-Thermus), Thermopolyspora (phylum Actinobacteria), and Pseudoxanthomonas (phylum Proteobacteria). The yield of the three trials was in the range of 17.1-19.7 kg/m2. It is thus feasible to use reservoir weeds compost instead of wheat straw compost for the cultivation of A. bisporus. © 2018 Science Press. All rights reserved.     

Effects of glucose dehydrogenase gene knock-out in Acetobacter sp. On the metabolism of carbon sources and the synthesis of 3-hydroxypropionic acid北大核心CSCD

3-Hydroxypropionic acid (3-HP) is an emerging platform chemical with a high added-value. Resting cells of Acetobacter sp. can efficiently catalyze 1,3-propanediol (1,3-PDO) to 3-HP. Glucose is oxidized by the membrane-bound dehydrogenase, resulting in an acidic environment that inhibits cell growth and reduces the biomass. We deleted the gdh gene for glucose dehydrogenase (GDH), and investigated the effects on cell growth, carbon metabolism, and 3-HP production. The gdh gene knocked-out showed a 1.72-fold increase in biomass in the mixed medium containing glucose and glycerol. A carbon flux analysis showed that glucose was converted to gluconic acid by GDH, followed by an oxidation to 2-ketogluconic acid. In addition, a small percentage of the gluconic acid was degraded via the pentose phosphate pathway. Glycerol was phosphorylated and entered the central pathway (gluconeogenesis). Results indicate that the deletion of gdh can effectively promote higher cell densities and improve the catalytic performance for the production of 3-HP, and thus provide a theoretical reference for improving the carbon source utilization and the catalytic performance of acetic acid bacteria. © 2018 Science Press. All rights reserved.     

Spatial distribution and risk assessment of soil heavy metal contamination along roadsides of the northwestern Sichuan Plateau,China北大核心CSCD

Traffic activities in roadways are the major source of heavy metal contamination on the northwestern Sichuan Plateau, China. To characterize the spatial pattern of heavy metal distribution, we collected soil samples and measured the concentrations of five heavy metals (Cd, Cu, Ni, Pb, and Zn) from nine sites in Hongyuan County, Sichuan Province, including three transects that reflected typical gradients of traffic density. Each transect consisted of three levels of traffic density sites. We calculated single pollution index, Nemerow multi-factor index, and potential ecological risk index, to assess the ecological risk of the heavy metal contamination. Results showed that the soils were contaminated by Cd and Zn, with higher concentrations than that of the natural soil background values in all sampling sites. Moreover, Cd and Zn concentrations increased with increasing traffic density, suggesting that traffic activities were potentially responsible for the metal contaminations. The single pollution index indicated that the study sites were heavily contaminated by Cd and slightly polluted by Ni, Pb, and Zn, and the Nemerow multi-factor and potential ecological risk indexes indicated moderate potential ecological risks at the study sites. Specifically, the sites with high traffic density were moderately contaminated and the sites with low traffic density were mildly contaminated. In general, Cd and Zn were highly accumulated in soils of the study region; therefore focus should be on the high ecological hazard associated with soil heavy metal contamination, even in undeveloped regions. © 2018 Science Press. All rights reserved.     

Using T-RFLP technology to analyze bacterial diversity in the rhizospheric soils of tea tree at different ages北大核心CSCD

The rhizospheric soils of Tieguanyin at different ages were used as the study materials, and terminal-restriction fragment length polymorphism (T-RFLP) was used to analyze the changes in bacterial diversity. The results showed that the number of T-RFs, Simpson index, and Shannon index decreased significantly with the age of the tea tree. Results of correlation analysis showed that 9 T-RFs from the bacterial community were significantly and positively correlated with the age of the tea tree, and included 34 species of microbes belonging to 10 classes. The 34 microbes were divided into 6 types according to their functional attributes, and included pathogenic bacteria, bacteria that improved soil texture or inhibited pathogenic bacteria, and bacteria associated with the carbon, nitrogen, or sulfur cycles, in which the percentage of pathogenic bacteria was 58.82%. Seventeen T-RFs were significantly and negatively correlated with the age of the tea tree, and included 38 species of bacteria belonging to 12 classes. The 38 bacterial species were divided into 5 types according to their functional attributes, and included pathogenic bacteria, bacteria that improved soil quality or inhibited pathogenic bacteria, and bacteria associated with the carbon cycle or nitrogen cycle, in which all the others, barring the pathogenic bacteria, accounted for 78.95% of the bacterial population. In brief, the diversity and function of bacteria in the rhizospheric soil of tea tree changed significantly with the age of the tea tree, which provides a theoretical basis for studying the interactions of bacterial communities. © 2018 Science Press. All rights reserved.     

Isolation,identification, and the degradation characteristics of a BDE-47 degrading strain北大核心CSCD

In an effort to remove BDE-47 residues from the environment, a bacterial strain that is capable of utilizing BDE-47 as the sole carbon source was isolated and screened from soil collected from an e-waste recycling area in Tianjin to analyze the degradation properties. The strain was preliminarily identified as Enterobacter sp. according to a 16S rDNA gene sequence analysis. The strain degraded 35.8% of 525 μg/L of BDE-47 in 35 d when the initial concentration of bacteria was 7.1 × 105 cells/ mL. The product of the biodegradation of BDE-47 was BDE-28. The biodegradation of BDE-47 fit well with first-order kinetics, and its degradation kinetics was ln Ct = - 0.104t + 6.22. With the addition of an electron acceptor, such as Fe3+, SO4 2- and NO3 -, the BDE-47 degradation rate was significantly increased to 49.8%, 59.1%, and 67.3%, respectively. The above results revealed that the strain could degrade BDE-47, which is of importance in the application of environmental bioremediation of BDE-47. © 2018 Science Press. All rights reserved.     

Bacterial community structure in waterlogged bamboo slips excavated from the Laoguanshan Han Dynasty Tomb of Chengdu北大核心CSCD

To investigate the bacterial community structure features of soak solutions used to preserve bamboo slips that were excavated from Han dynasty tomb located in Laoguanshan of Chengdu and to reveal the diversity of bacteria in these soak solutions, PCR-DGGE was employed. Subsequently, the major DGGE bands were excised and sequenced to analyze the phylogeny of bacteria. The richness (S), Shannon-Wiener index (H), and Simpson index (D) of deionized water (0#) without the soaked bamboo slips were higher than those of the other samples. Among the bamboo slip soak solution samples, there were significant differences in these indicators; the bacterial genetic diversity of sample 121# was the highest and that of sample 1# was the lowest. Principal Component Analysis (PCA) showed that there were comparatively large differences among the samples, and the similarity between sample 1# and others was the lowest. Based on the sequence analysis, the major community of bacteria in soak solution were belonged to Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria, including Cupriavidus, Aquabacterium, Comamonas, Albidiferax, Hyphomicrobiaceae, Azospirillum, Nevskia, Streptococcus, Staphylococcus, Sediminibacterium, and Propionibacterium, among which Cupriavidus of the β-Proteobacteria class was detected in all samples. The bacterial community structure of the soak solutions that were collected from different bamboo slips was quite complex and significantly different. The analysis of the main bacterial community revealed the potential bacteria species that may trigger the damage in bamboo slips; the result provided a reference to prevent waterlogged bamboo slips from microbial diseases in the future. © 2018 Science Press. All rights reserved.     

Characteristics of culturable endophytic bacteria of Xanthoceras sorbifolia Bunge with tumor roots北大核心CSCD

Xanthoceras sorbifolia Bunge with tumor roots was discovered, and the endophytic bacteria that were isolated from the tumor roots were purified and identified. This paper aimed to study the characteristics of endophytic bacteria. The CAS detection plate, Salkowski colorimetry, phosphate solubilizing circle, and molybdenum antimony spectrophotometry were used to analyze endophytic bacteria ability, which produced siderophores, secreted indole-3-acetic acid (IAA), and dissolved phosphorus. Strains were isolated from the tumor roots through morphological and molecular identification, and they were named XSB1-XSB9, of which 6 strains belonged to Bacillus sp., 2 strains belonged to Brevibacillus sp., and 1 strain belonged to Pseudomonas sp. All 9 strains produced siderophores; strains XSB3, XSB4, XSB8, and XSB9 were extremely high yielding, and strains XSB5 and XSB6 were high yielding. The strains with high yields were XSB3, XSB4, XSB5, XSB6, XSB8, and XSB9 and accounted for 66.7% of the tested strains. Nine strains secreted IAA; the concentration of IAA secreted by the strains that contained tryptophan was between 15-50 mg/L, and the concentration of IAA secreted by the one strain without tryptophan was between 10-35 mg/L. The IAA ability of the XSB2, XSB3, XSB4, XSB5, and XSB9 strains were significantly different (P < 0.05) after adding tryptophan. These results indicate that the synthesis of IAA may be the tryptophan synthesis pathway where tryptophan is used as a precursor. All 9 strains had some ability to dissolve phosphorus. The concentration of phosphate in the solubilizing strains, XSB1, XSB2, XSB4, and XSB5, were significantly higher than that in the other strains (P < 0.01), and the concentration of phosphate solubilizing was between 50-90 mg/L; the ability to dissolve phosphate was increased by 19-29 times. The XSB4 and XSB5 strains, which produced siderophores, secreted IAA and had a strong capacity to dissolve phosphorus, may be candidate strains for promoting growth. This research provides the foundation for the development and utilization of rhizosphere microbes to understand the resistance mechanisms and cultivation level of X. sorbifolia. © 2018 Science Press. All rights reserved.     

Fine root decomposition and nutrient release in Toona sinensis plantation under the reconstruction mode of low-efficiency cypress forest gaps北大核心CSCD

Fine root decomposition is an important way in which nutrients are returned to plantation soil; thus, further study of this process will be helpful for understanding material cycling in forest ecosystems. We investigated a Toona sinensis plantation in the central Sichuan hilly region using litter bags containing T. sinensis fine roots to evaluate the dynamics of fine root decomposition and nutrient release for one year in forest gaps of 50 m2 (L1), 100 m2 (L2), and 150 m2 (L3). The results showed that T. sinensis fine root decomposition was fastest in the first 90 days. As time passed, the decomposition rate slowed. One year later, the residue rate was 75.44%, 73.92%, and 72.07%, respectively. The fine root decomposition rate of L3 was greater than that of L2, which was greater than that of L1. During fine root decomposition, the dynamics of the fine root nutrient concentrations changed. C, P, and K concentrations of the fine roots declined in forest gaps, while N, Ca, and Mg concentrations increased overall in the fine roots. In conclusion, forest gaps had effects on the fine root decomposition and nutrient release of T. sinensis, and different sized forest gaps produced different results. © 2018 Science Press. All rights reserved.     

Soil physicochemical properties of Pinus tabuliformis plantations of different ages in Yanqing,Beijing北大核心CSCD

Soil physicochemical properties are important parameters to characterize soil quality. To evaluate the effects of different stand ages from young to mature on the soil physicochemical properties of Pinus tabulaeformis plantations, four different aged P. tabulaeformis plantations (14, 28, 36, and 51-year old) were investigated in Yanqing district, Beijing, China. Soil samples were collected at depths of 0-10, 10-20, and 20-30 cm, to analyze the effect of soil depth on soil physicochemical indexes. With increasing soil depth, the soil moisture content, water holding capacity, and porosity decreased gradually, but pH value increased. There was no significant difference in soil bulk density (BD) between different soil depths. Organic matter (OM), nitrogen (N), phosphorus (P), and potassium (K) content also decreased gradually with increasing soil depth, but there was no uniform change in electrical conductivity (EC). With the growth and development of P. tabulaeformis plantations, the soil moisture content, water holding capacity, and porosity of the same depth increased gradually, but pH value decreased. The difference in BD between different ages was not significant. The OM, N, and P content showed an increasing trend with increasing stand age. The K content in 14 a and 28 a plantations was significantly higher than that in 36 a and 51 a plantations. EC was the highest in 51 a plantations. The correlation analysis showed that there was a significant negative correlation between BD and water characteristics, porosity. There was a significant positive correlation between OM and N, P. The negative correlation between OM and pH reached a significant level at P < 0.01. OM was negatively correlated with BD, total potassium (TK, P < 0.05) and available potassium (AK, P > 0.05). Therefore, the soil physicochemical properties of P. tabulaeformis plantations improved with increasing stand age. Our results provide a theoretical basis for the management of P. tabulaeformis plantations in Beijing, such as thinning, fertilization management, and mixed forest forestation. © 2018 Science Press. All rights reserved.