Application of next-generation sequencing technologies to conservation of wood-inhabiting fungi

Next-generation sequencing (NGS) has significantly increased knowledge of microbial communities and their distribution. However, it is still not common to apply NGS technology to microbial conservation. We sought to use NGS technologies to evaluate conservation strategies for wood-inhabiting fungi. Evaluating a deadwood experiment 3 years after it was established, we specifically examined which tree species combinations promoted the highest richness of wood-inhabiting fungi. Deadwood enrichment was an effective strategy and logs of 6 tree species, either those with the highest wood-inhabiting fungal α and γ diversity or those with the highest β diversity, maintained >1,000 operational taxonomic units (OTUs) spread over a wide range of taxonomic groups. In comparison, a conservation strategy based only on the results of sporocarp surveys yielded 591 OTUs. This result highlights the need to use NGS approaches to inform microbial conservation strategies. We also determined that 5 tree species with the highest saproxylic beetle γ diversity simultaneously conserved wood-inhabiting fungi. Apart from deadwood volume, we suggest data on deadwood quality and species also be included as indicators, especially for wood-inhabiting fungal diversity, and incorporated quickly in forest assessment and monitoring systems in Central Europe.     

Early signs of recovery of Acropora palmata in St. John,US Virgin Islands

Since the 1980s, diseases have caused significant declines in the population of the threatened Caribbean coral Acropora palmata. Yet it is largely unknown whether the population densities have recovered from these declines and whether there have been any recent shifts in size-frequency distributions toward large colonies. It is also unknown whether colony size influences the risk of disease infection, the most common stressor affecting this species. To address these unknowns, we examined A. palmata colonies at ten sites around St. John, US Virgin Islands, in 2004 and 2010. The prevalence of white-pox disease was highly variable among sites, ranging from 0 to 53 %, and this disease preferentially targeted large colonies. We found that colony density did not significantly change over the 6-year period, although six out of ten sites showed higher densities through time. The size-frequency distributions of coral colonies at all sites were positively skewed in both 2004 and 2010, however, most sites showed a temporal shift toward more large-sized colonies. This increase in large-sized colonies occurred despite the presence of white-pox disease, a severe bleaching event, and several storms. This study provides evidence of slow recovery of the A. palmata population around St. John despite the persistence of several stressors.     

Pairing patterns in relation to body size,genetic similarity and multilocus heterozygosity in a tropical monogamous bird species

The relative influence of genetic and phenotypic quality on pairing status and mating patterns in socially monogamous species remains poorly documented. We studied social status and pairing patterns in relation to genetic similarity and multilocus heterozygosity (MLH) estimates from 11 microsatellite markers, and both tarsus length and wing chord (as a measure of competitive ability in territorial defence) in a socially monogamous tropical bird species where individuals defend territories year-round, alone or in pairs, the Zenaida dove, Zenaida aurita. Tarsus length and wing chord did not differ between unpaired territorial birds and paired ones in either sex, whereas paired females, but not paired males, tended to be more heterozygous than unpaired ones. Among 84 pairs, we found no evidence for assortative mating for tarsus length, wing chord, MLH or genetic similarity. However, within pairs, male wing chord was positively related to female MLH and female tarsus length was positively related to male MLH, with no evidence for local effects, suggesting assortative mating by individual quality. Although the observed pattern of mating in Zenaida doves may be the product of mutual mate choice, further assessment of this hypothesis requires direct investigation of both mating preference in each sex and lifetime reproductive success in relation to body size and MLH.     

Influence of different processing techniques on the mechanical properties of used tires in embankment construction

Use of the processed used tires in embankment construction is becoming an accepted way of beneficially recycling scrap tires due to shortages of natural mineral resources and increasing waste disposal costs. Using these used tires in construction requires an awareness of the properties and the limitations associated with their use. The main objective of this paper is to assess the different processing techniques on the mechanical properties of used tires–sand mixtures to improve the engineering properties of the available soil. In the first part, a literature study on the mechanical properties of the processed used tires such as tire shreds, tire chips, tire buffings and their mixtures with sand are summarized. In the second part, large-scale direct shear tests are performed to evaluate shear strength of tire crumb–sand mixtures where information is not readily available in the literature. The test results with tire crumb were compared with the other processed used tire–sand mixtures. Sand–used tire mixtures have higher shear strength than that of the sand alone and the shear strength parameters depend on the processing conditions of used tires. Three factors are found to significantly affect the mechanical properties: normal stress, processing techniques, and the used tire content.     

Monitoring changes in forest and other land use forms in Istanbul

This study introduces the monitoring system to be established within this project, it aims to determine changes occurring within forested areas, settlement areas and other land use forms located at the peripheral area of Istanbul during consecutive decades. The first phase of the study was completed in 1998 and published, covering the period from 1984 to 1994. This study is the second phase of the first one and implemented to determine land use changes which have occurred on the same site from 1994 to 2000. Standard topographic maps with 1/25 000 scale, forest management maps with the same scale, results of the previous study, orthophoto maps of the year 2000 that were produced from aerial color photographs of the site with 1/5 000 scale, and 4-band IRS_LISS III multispectral satellite data for July 2000 were used as data. The changes in land use within the study area occurring during a six year period were studied.