Tiger shark (Galeocerdo cuvier) movement patterns and habitat use determined by satellite tagging in eastern Australian waters

Partial migration is considered ubiquitous among vertebrates, but little is known about the movements of oceanodromous apex predators such as sharks, particularly at their range extents. PAT-Mk10 and SPOT5 electronic tags were used to investigate tiger shark (Galeocerdo cuvier) spatial dynamics, site fidelity and habitat use off eastern Australia between April 2007 and May 2013. Of the 18 tags deployed, 15 recorded information on depth and/or temperature, and horizontal movements. Tracking times ranged between four and 408 days, with two recovered pop-up archival tags allowing 63 days of high-resolution archived data to be analysed. Overall mean proportions of time-at-depth revealed that G. cuvier spent the majority of time-at-depths of <20 m, but undertook dives as deep as 920 m. Tagged sharks occupied ambient water temperatures from 29.5 °C at the surface to 5.9 °C at depth. Deep dives (>500 m) occurred mostly around dawn and dusk, but no definitive daily dive patterns were observed. Horizontal movements were characterised by combinations of resident and transient behaviour that coincided with seasonal changes in water temperature. While the majority of movement activity was focused around continental slope waters, large-scale migration was evident with one individual moving from offshore Sydney, Australia, to New Caledonia (c. 1,800 km) in 48 days. Periods of tiger shark residency outside of Australia’s fisheries management zones highlight the potential vulnerability of the species to unregulated fisheries and the importance of cross-jurisdictional arrangements for species’ management and conservation.     

Irreplaceable area extends marine conservation hotspot off Tunisia: insights from GPS-tracking Scopoli’s shearwaters from the largest seabird colony in the Mediterranean

Recent meta-analyses identified conservation hotpots at the scale of the Mediterranean, yet those may be crude by lack of detailed information about the spatial ecology of the species involved. Here, we identify an irreplaceable marine area for >95 % of the world population of the Scopoli’s shearwater (Calonectris diomedea), which is endemic to the Mediterranean and breeds on the island of Zembra off Tunis. To this end, we studied the three-dimensional at-sea movements of 50 breeding adults (over a total of 94 foraging trips) in 2012 and 2013, using GPS and temperature–depth recorders. Feathers were also collected on all birds to investigate their trophic status. Despite Zembra being the largest seabird colony in the Mediterranean (141,000 pairs), the per capita home-range of Scopoli’s shearwaters foraging from this colony was not larger than that of birds from much smaller colonies, indicating highly beneficial feeding grounds in the Gulf of Tunis and off Cap Bon. Considering depleted Mediterranean small pelagic fish stocks, supposed to be Scopoli’s shearwater prey base, we therefore speculate that birds may now also largely feed on zooplankton, something which is supported by our stable isotopic analyses. Crucially, shearwater at-sea feeding and resting areas showed very little overlap with a conservation hotspot recently defined on the western side of the Gulf of Tunis using meta-analyses of species distributions relative to anthropogenic threats. We therefore propose a major extension to this conservation hotspot. Our study stresses the importance of detailed biotelemetry studies of marine megafauna movement ecology for refining large-scale conservation schemes such as marine protected area networks.     

Copulation duration,but not paternity share,potentially mediates inbreeding avoidance in Drosophila montana

Studying the incidence of inbreeding avoidance is important for understanding the evolution of mating systems, especially in the context of mate choice for genetic compatibility. We investigated whether inbreeding avoidance mechanisms have evolved in the malt fly, Drosophila montana, by measuring mating latency (a measure of male attractiveness), copulation duration, days to remating, offspring production, and the proportion of offspring sired by the first (P₁) and second (P₂) male to mate in full-sibling and unrelated pairs. SNP markers were used for paternity analysis and for calculating pairwise relatedness values (genotype sharing) between mating pairs. We found 18 % inbreeding depression in egg-to-adult viability, suggesting that mating with close relatives is costly. Copulation duration was shorter between previously mated females and their brothers than with unrelated males. Based on an earlier study, shorter copulation is likely to decrease the number of inbred progeny by decreasing female remating time. However, shorter copulations did not lead to lower paternity (P₂) of full-sibling males. Progeny production of double-mated females was lower when the second male was a full-sibling as compared to an unrelated male, but we could not distinguish between inbreeding depression and lower female reproductive effort after mating with a relative. Relatedness estimates based on 34 SNPs did not detect any quantitative effect of relatedness variation on copulation duration and progeny production. We suggest that inbreeding depression has been strong enough to select for inbreeding avoidance mechanisms in our Finnish D. montana population.     

Deconstructing an assemblage of “turtle” barnacles: species assignments and fickle fidelity in Chelonibia

Barnacles in the genus Chelonibia are commensal with a variety of motile marine animals including sea turtles, crustaceans, and sirenians. We conducted a worldwide molecular phylogenetic survey of Chelonibia collected from nearly all known hosts to assess species relationships, host-fidelity, and phylogeographic structure. Using DNA sequences from a protein-coding mitochondrial gene (COI), a mitochondrial rRNA gene (12S), and one nuclear rRNA gene (28S), we found that of four species, three (C. testudinaria, C. patula, and C. manati) are genetically indistinguishable. In addition, we show each utilizes a rare androdioecious mode of reproduction involving complemental males. In contrast, the fourth species (C. caretta), which is hermaphroditic and specializes on turtles, is genetically distinct—leading to the conclusion that the three former taxa are morphotypes of the same species and should be synonymized under C. testudinaria. Phylogenetic analysis resulted in three geographic clades (Atlantic, Indian Ocean/western Pacific, and eastern Pacific) with haplotype parsimony networks revealing no shared haplotypes among geographic regions. Analysis of molecular variance detected significant differences among sequences by region (p < 0.005); conversely, there were no significant differences among sequences when grouped by host or taxonomic designation. Average pairwise genetic distances were lower between the eastern Pacific and Atlantic clades (0.053 ± 0.006) than between the eastern Pacific and Indian Ocean/western Pacific clades (0.073 ± 0.008), suggesting Atlantic and eastern Pacific populations were connected more recently, perhaps until the rise of the Isthmus of Panama. Host use by Chelonibia morphotypes is discussed along with speculation on possible ancestral hosts and support for a “turtle-first” hypothesis.     

Sclerochronological studies reveal that patterns of otolith growth of adults of two co-occurring species of Platycephalidae are synchronised by water temperature variations

Chronologies are developed from the otolith growth-increment widths of adult rock flathead (Platycephalus laevigatus) and longhead flathead (Leviprora inops) collected from three inter-connected embayments in temperate south-western Australia. Marginal increment trends on otoliths, in combination with the dendrochronological technique of crossdating, provide strong evidence that an opaque zone is formed annually in the otoliths of both species. Increment widths between opaque zones in the otoliths of individuals of P. laevigatus (maximum age 20 years) and L. inops (maximum age 21 years) were synchronised within and between species. The correlation between the two master otolith chronologies, i.e. mean standardised increment width for each year, was highly significant (P < 0.01). The master otolith chronology for each species was positively correlated with mean sea surface temperatures from 1 July to 30 June, which encompassed the austral summer when growth is typically greatest, and with mean monthly sea surface temperature between September and March. Leeuwin Current strength, which influences the biotic characteristics of some marine species on the south coast, has little influence on the pattern of otolith growth, presumably because the inter-connected embayments from which fish were obtained were partially enclosed. On the basis of the above data and the geographical distributions of P. laevigatus and L. inops, it is proposed that, while both species would grow faster with increasing temperature, the temperatures on the south coast are closer to the optimum for the former species.     

Determining the diet of larvae of the red rock lobster (Jasus edwardsii) using high-throughput DNA sequencing techniques

The diet of Jasus edwardsii during its ~2-year larval (phyllosoma) phase is largely unknown. High mortalities experienced during larviculture might be reduced if their diet were nutritionally modelled on the natural diet. Here, prey species were identified from phyllosoma midgut glands using 454 pyrosequencing of 18S rDNA. We found that gelatinous zooplankton, particularly Siphonophora and Ctenophora, occurred frequently in the midgut glands of phyllosomas, resolving previous conjecture that these animals are in the diet of J. edwardsii phyllosomas. A high occurrence of sequencing reads from unicellular microbes may also reflect a reliance on scavenging detritus.     

Demographic parameters of two populations of red coral (Corallium rubrum L. 1758) in the North Western Mediterranean

The demographic and reproductive structure of populations represents the main data set needed for conservation and management plans. Mediterranean red coral Corallium rubrum has been exploited for 2,000 years, but only recently management plans have been solicited by the international community. We examined and compared the demographic features of two red coral shallow populations located in distinct geographic locations: Portofino (Italy) and Cap de Creus (Spain). Adults and juveniles density, growth rates, population size and age structure, fecundity and fertility were examined. Juveniles were the dominant class (33 %) in both populations. The analysis of the gamete content of 653 colonies revealed that the populations have balanced sex ratios and similar fertility and polyp fecundity. The average annual growth rate, determined on 119 colonies by annual growth rings count, was similar in both populations (0.24 mm year^?1), decreasing with colony age. Maximum life span of 99 % of the colonies was 60 and 40 years at Portofino and Cap de Creus, respectively. Minimum harvestable size (7 mm basal diameter) was reached in 30–35 years, and the percentage of colonies above it was 6.7 % at Portofino and 2.1 % at Cap de Creus, where juvenile and adult colony densities were significantly lower and the percentage of commercial-sized colonies reduced by 25 % in just a few years. Notwithstanding similar growth and fecundity, the two populations showed different densities and size/age structures suggesting local factors, together with different fishing pressures, have to be taken into account in the management plans for this species.     

Model selection criteria for overdispersed data and their application to the characterization of a host-parasite relationship

In the statistical modeling of a biological or ecological phenomenon, selecting an optimal model among a collection of candidates is a critical issue. To identify an optimal candidate model, a number of model selection criteria have been developed and investigated based on estimating Kullback’s (Information theory and statistics. Dover, Mineola, 1968) directed or symmetric divergence. Criteria that target the directed divergence include the Akaike (2nd international symposium on information theory. Akadémia Kiadó, Budapest, Hungary, pp 267–281, 1973, IEEE Trans Autom Control AC 19:716–723, 1974) information criterion, AIC, and the “corrected” Akaike information criterion (Hurvich and Tsai in Biometrika 76:297–307, 1989), AICc; criteria that target the symmetric divergence include the Kullback information criterion, KIC, and the “corrected” Kullback information criterion, KICc (Cavanaugh in Stat Probab Lett 42:333–343, 1999; Aust N Z J Stat 46:257–274, 2004). For overdispersed count data, simple modifications of AIC and AICc have been increasingly utilized: specifically, the quasi Akaike information criterion, QAIC, and its corrected version, QAICc (Lebreton et al. in Ecol Monogr 62(1):67–118 1992). In this paper, we propose analogues of QAIC and QAICc based on estimating the symmetric as opposed to the directed divergence: QKIC and QKICc. We evaluate the selection performance of AIC, AICc, QAIC, QAICc, KIC, KICc, QKIC, and QKICc in a simulation study, and illustrate their practical utility in an ecological application. In our application, we use the criteria to formulate statistical models of the tick (Dermacentor variabilis) load on a white-footed mouse (Peromyscus leucopus) in northern Missouri.     

Solvent-free biodiesel epoxidation

Biodiesel emerged again recently as an alternative for fossil fuels. Besides energy, biodiesel can be used as raw material to synthesize high value products such as epoxides. Indeed, epoxides are versatile intermediates in organic synthesis for numerous reactions due to the high reactivity of the oxirane ring. Actually common epoxidation by peracids in organic solvent can last several hours according to the double bonds number. The solvent confers selectivity to the reaction, preventing di-hydroxylation. Alternatively solvent-free reactions can be done in shorter times, but hydroxylation is less controlled. Here, we set up the synthesis of epoxides from methyl and ethyl esters of waste cooking oil, without solvent or metal catalyst. We tested molar ratio of hydrogen peroxide and formic acid, double bond number, reaction time, and temperature. Results show that the highest epoxide yields and selectivity, with high conversion of the double bonds, were obtained for temperature reactions between 50 and 65 °C, reaction times from 2 to 3 h, and molar ratio of 20/2/1. For those conditions, the double bonds conversion is equal or near 100 %, with epoxide yield and selectivity between 85 and 93 %. Organic solvent suppression, besides being environmentally friendly, also saves reaction time and subsequent purification steps.     

Complex national sampling design for long-term monitoring of protected dry grasslands in Switzerland

We describe a probabilistic sampling design of circular permanent plots for the long-term monitoring of protected dry grasslands in Switzerland. The population under study is defined by the perimeter of a national inventory. The monitoring focus is on the species composition of the protected grassland vegetation and derived conservation values. Efficient trend estimations are required for the whole country and for some predefined target groups (six biogeographical regions and eleven vegetation types). The target groups are equally important regardless of their size. Consequently, intensified sampling of the less frequent groups is essential for sample efficiency. The prior information needed to draw a targeted sample is obtained from the sampling frame and external databases. The logistics and generalized delineation of the target population may pose further problems. Thus, investments in fieldwork and travel time should be well balanced by selecting a cluster sample. Second, any access problems in the field and non-target units in the sample should be compensated for by selecting reserve plots as they otherwise may considerably reduce the effective sample size. Finally, the design has to be flexible as the sampling frame may change over time and sampling intensity might have to be adjusted to redefined budgets or requirements. Likewise, the variables and biological items of interest may change. To fulfil all these constraints and to optimally use the available prior information, we propose a multi-stage self-weighted unequal probability sampling design. The design uses modern techniques such as: balanced sampling, spreading, stratified balancing, calibration, unequal probability sampling and power allocation. This sampling design meets the numerous requirements of this study and provides a very efficient estimator.