The meta-hydroxylation step in the phenylpropanoid pathway: a new level of complexity in the pathway and its regulation

Together in silico and genetic mining approaches have recently designated the CYP98 family of plant cytochromes P450 as the family of enzymes that catalyzes the meta-hydroxylation step in the phenylpropanoid pathway. This meta-hydroxylation is not catalyzed on the free p-coumaric acid as anticipated, but on its conjugates with shikimic, quinic, or phenyllactic acids. While all CYP98s have in common phenol meta-hydroxylase activity, p-coumaroylshikimate remains their preferred substrate. High expression of CYP98s is detected in lignifying tissues in stems, roots, and siliques. The CYP98A3 gene disruption in Arabidopsis thaliana leads to a drastic inhibition of lignin synthesis, cell growth, and plant development. The meta-hydroxylation of phenolic precursors is thus essential for higher plant development. Isolation of coding sequences belonging to the CYP98 family from basil, wheat, and extensive functional analysis of the recombinant enzymes, together with CYP98s from other plant taxa, helps shedding some light on mechanisms of P450s evolution. Most importantly, the occurrence of the meta-hydroxylation on esters of shikimic or quinic acids introduces a new biochemical regulation mechanism in the phenylpropanoid pathway.     

Judging where a ball will go: the case of curved free kicks in football

This study examined whether adding spin to a ball in the free kick situation in football affects a professional footballer’s perception of the ball’s future arrival position. Using a virtual reality set-up, participants observed the flight paths of aerodynamically realistic free kicks with (±600 rpm) and without sidespin. With the viewpoint being fixed in the centre of the goal, participants had to judge whether the ball would have ended up in the goal or not. Results show that trajectories influenced by the Magnus force caused by sidespin gave rise to a significant shift in the percentage of goal responses. The resulting acceleration that causes the ball to continually change its heading direction as the trajectory unfolds does not seem to be taken into account by the participants when making goal judgments. We conclude that the visual system is not attuned to such accelerated motion, which may explain why goalkeepers appear to misjudge the future arrival point of such curved free kicks. Electronic Supplementary Material  Supplementary material is available for this article at .     

Wintering Waterbirds and Recreationists in Natural Areas: A Sociological Approach to the Awareness of Bird Disturbance

Disturbance to wintering birds by human recreational activities has become a major concern for managers of many natural areas. Few studies have examined how recreationists perceive their effects on birds, although this impacts their behavior on natural areas. We surveyed 312 users on two coastal ornithological sites in Brittany, France, to investigate their perception of the effects of human activities on wintering birds. The results show that the awareness of environmental issues and knowledge of bird disturbance depends on the socioeconomic characteristics of each user group, both between the two sites and within each site. Results also indicate that, whatever the site and the user group, the vast majority of the respondents (77.6 %) believed that their own presence had no adverse effects on the local bird population. Various arguments were put forward to justify the users’ own harmlessness. Objective information on recreationists’ awareness of environmental issues, and particularly on their own impact on birds, is important to guide managers in their choice of the most appropriate visitor educational programs. We recommend developing global but also specific educational information for each type of user to raise awareness of their own impact on birds.     

A bee in the corridor: centering and wall-following

In an attempt to better understand the mechanism underlying lateral collision avoidance in flying insects, we trained honeybees (Apis mellifera) to fly through a large (95-cm wide) flight tunnel. We found that, depending on the entrance and feeder positions, honeybees would either center along the corridor midline or fly along one wall. Bees kept following one wall even when a major (150-cm long) part of the opposite wall was removed. These findings cannot be accounted for by the “optic flow balance” hypothesis that has been put forward to explain the typical bees’ “centering response” observed in narrower corridors. Both centering and wall-following behaviors are well accounted for, however, by a control scheme called the lateral optic flow regulator, i.e., a feedback system that strives to maintain the unilateral optic flow constant. The power of this control scheme is that it would allow the bee to guide itself visually in a corridor without having to measure its speed or distance from the walls.     

Groundwater dependent ecosystems. Part I: Hydroecological status and trends

Groundwater dependent ecosystems (GDEs) include valuable ecosystems such as springs, wetlands, rivers, lakes and lagoons. The protection of these systems and services they provide is highlighted by international agreements, i.e. Ramsar convention on wetlands, and regional legislation, i.e. the European Water Framework Directive. Groundwater provides water, nutrients and a relatively stable temperature. However, the role of groundwater in surface ecosystems is not fully understood. The ecosystem can depend on groundwater directly or indirectly, and the reliance can be continuous, seasonal or occasional. This has implications for the vulnerability of ecosystems, as some may be easily affected by external pressure. Conceptual models and quantitative assessments of how groundwater interacts with the environment are needed. GDEs are also threatened by different land use activities and climate change. Hence, we need to understand how GDEs are affected by changes in groundwater quantity and quality, as severe groundwater changes have been observed in many regions. This study examines key aspects of GDEs (hydrogeology, geochemistry and biodiversity) in order to improve conceptual understanding of the role of groundwater in such ecosystems. The status and baseline of different types of GDEs are discussed, with particular emphasis on past evidence of environmental change and potential thresholds and threats in GDEs in various parts of Europe with different land use, climate and geology.     

Modelling directional spatial processes in ecological data

Distributions of species, animals or plants, terrestrial or aquatic, are influenced by numerous factors such as physical and biogeographical gradients. Dominant wind and current directions cause the appearance of gradients in physical conditions whereas biogeographical gradients can be the result of historical events (e.g. glaciations). No spatial modelling technique has been developed to this day that considers the direction of an asymmetric process controlling species distributions along a gradient or network. This paper presents a new method that can model species spatial distributions generated by a hypothesized asymmetric, directional physical process. This method is an eigenfunction-based spatial filtering technique that offers as much flexibility as the Moran's eigenvector maps (MEM) framework; it is called asymmetric eigenvector maps (AEM) modelling. Information needed to construct eigenfunctions through the AEM framework are the spatial coordinates of the sampling or experimental sites, a connexion diagram linking the sites to one another, prior information about the direction of the hypothesized asymmetric process influencing the response variable(s), and optionally, weights attached to the edges (links). To illustrate how this new method works, AEM is compared to MEM analysis through simulations and in the analysis of an ecological example where a known asymmetric forcing is present. The ecological example reanalyses the dietary habits of brook trout (Salvelinus fontinalis) sampled in 42 lakes of the Mastigouche Reserve, Québec.     

GIS and local knowledge in disaster management: a case study of flood risk mapping in Viet Nam

Linking community knowledge with modern techniques to record and analyse risk related data is one way of engaging and mobilising community capacity. This paper discusses the use of the Geographic Information System (GIS) at the local level and the need for integrating modern technology and indigenous knowledge into disaster management. It suggests a way to mobilise available human and technical resources in order to strengthen a good partnership between local communities and local and national institutions. The paper also analyses the current vulnerability of two communes by correlating hazard risk and loss/damage caused by disasters and the contribution that domestic risk maps in the community can make to reduce this risk. The disadvantages, advantages and lessons learned from the GIS flood risk mapping project are presented through the case study of the Quang Tho Commune in Thua Thien Hue province, central Viet Nam.     

Pedogenesis and nickel biogeochemistry in a typical Albanian ultramafic toposequence

This study aimed at relating the variability of Ni biogeochemistry along the ultramafic toposequence to pedogenesis and soil mineralogy. Hypereutric Cambisols dominate upslope; Cambic Vertisols and Fluvic Cambisols occur downslope. The soil mineralogy showed abundance of primary serpentine all over the sequence. It is predominant upslope but secondary smectites dominate in the Vertisols. Free Fe-oxides are abundant in all soils but slightly more abundant in the upslope soils. Whereas serpentines hold Ni in a similar and restricted range in every soil (approx. 0.3 %), Ni contents in smectites may vary a lot and Mg-rich and Al-poor smectites in the Vertisol could hold up to 4.9 % Ni. Ni was probably adsorbed onto amorphous Fe-oxides and was also exchangeable in secondary smectites. High availability of Ni in soils was confirmed by DTPA extractions. However, it varied significantly along the toposequence, being higher in upslope soils, where Ni-bearing amorphous Fe-oxides were abundant and total organic carbon higher and sensibly lower downslope on the Vertisols: Ni_DTPA varied from 285 mg kg^?1 in the surface of soil I (upslope) to 95.9 mg kg^?1 in the surface of Fluvic Cambisols. Concentration of Ni in Alyssum murale shoots varied from 0.7 % (Hypereutric Cambisols) to 1.4 % (Hypereutric Vertisol). Amazingly, Ni uptake by A. murale was not correlated to Ni_DTPA, suggesting the existence of specific edaphic conditions that affect the ecophysiology of A. murale upslope.     

Challenging established narratives on soil erosion and shifting cultivation in Laos

The official environmental discourse in Laos describes a “chain of degradation” stretching from upland shifting cultivation, increased runoff and soil erosion to the siltation of wetlands and reservoirs. This perspective has had wide‐ranging impacts on rural development policy which, in the uplands, has long favoured forest conservation over agriculture. Integrating soil erosion and water sediment data with local perceptions of land degradation in an upland village of northern Laos, this study tests the validity of the official environmental discourse. Biophysical measurements made in a small agricultural catchment indicate a significant correlation between the spatial extent of cultivation and soil erosion rates. However, sediment yields recorded at the outlet of the catchment highlight relatively low levels of off‐site sediment exportation. Furthermore, farmers' perceptions suggest that local land degradation issues and crop yield declines could be less related to soil erosion than to agricultural land shortage, increased weed competition, and fertility losses resulting from the intensification of shifting cultivation. The study concludes that a better understanding and management of land degradation issues can be achieved by developing more inclusive and scientifically‐informed approaches to environmental perceptions and narratives.