Correlation between phenotypic expression of de novo marker chromosomes and genomic organization using replicational banding

It has been suggested that actively expressed genes are primarily located in early replicating bands. This hypothesis is supported by cytogenetic and pregnancy outcome data from four consecutive cases of prenatally detected de novo marker chromosomes. Two fetuses with major anomalies had large early replicating bands, while the marker in a third phenotypically normal fetus was late replicating. In the fourth case, a ring marker chromosome had only a small early replicating region. Pregnancy termination was elected. While no structural malformations were apparent, potential intellectual function in this case remains unresolved. An understanding of the relationship between genomic organization and chromosome banding is critical in counseling for prenatally detected de novo marker chromosomes. Replicational banding is particularly helpful in recognizing genes that may be actively expressed and result in developmental abnormality.     

Chromosome mosaicism and maternal cell contamination in chorionic villi

While chorionic villus sampling allows both early and rapid prenatal diagnosis of chromosome disorders, the accuracy of this technique has not been fully established. Maternal cell contamination and pseudomosaicism represent two major sources of diagnostic error. Combined use of both direct chromosome preparations and villus cultures is important in overcoming these problems. Direct preparations of villus tissue allow recognition of maternal cell contamination of villus cultures. Conversely, villus cultures yield higher resolution chromosomes and may be helpful in differentiating between true versus pseudomosaicism when two or more cell lines are identified in direct chromosome preparations. Preliminary data suggest that analysis of direct preparations from multiple individually processed villus fragments may also be of value in this regard. Until more experience is gained, mid-trimester amniocentesis should be offered to CVS patients when mosaicism is encountered.     

Influences on dusky dolphin (<Emphasis Type="Italic">Lagenorhynchus obscurus</Emphasis>) fission-fusion dynamics in Admiralty Bay,New Zealand

In societies characterized by a high degree of fission-fusion dynamics, individuals adjust their grouping patterns according to the shifting balance of costs and benefits associated with grouping. This study examines influences on fission-fusion dynamics for dusky dolphins (Lagenorhynchus obscurus) in Admiralty Bay, New Zealand. This area is an important foraging habitat for dusky dolphins during the winter and spring. Admiralty Bay has little predation risk, but nearshore mussel farms may infringe on available habitat. I used generalized estimating equations to determine the influences of coordinated foraging, predation risk, and presence of mussel farms on party size, rate of fission-fusion, and behavioral state. I conducted 168 boat-based group focal follows totaling 168 h. The proportion of individuals observed foraging was positively related to party size and rate of party fusion. Resting had no effect on party size and did not vary according to location. Near mussel farms, traveling decreased, and rate of party fission decreased. I conclude that (1) coordinated foraging strategies are a primary influence on fission-fusion dynamics within this population, (2) dolphins may respond to decreased predation risk by not adjusting party size or location during resting, and (3) areas near mussel farms are not used for traveling.     

Environmental impacts of two kind of ponds for shrimp production at Northwest Mexico

Aquaculture offers a major opportunity for the economic development of Baja California Sur (BCS), Mexico. The severely limited freshwater supply and the geographic isolation of the state place limits on other productive activities. Despite the aridity, the natural vegetation of BCS is diverse and structurally complex with a high percentage (20%) of endemic species. In this work we compare the environmental impacts produced by two kinds of aquaculture systems: coastal ponds vs. inland ponds. Construction and operation of coastal ponds does not require destruction of the natural vegetation and, as is true for inland ponds. Coastal ponds are also compatible with conservation of mangroves, sea grasses and sensitive habitats for fish and mollusks. To reduce the negative impacts of aquaculture and to protect the vegetation of Baja California Sur, we recommend the use of coastal ponds for shrimp production.     

Mass Transport in Vegetated Shear Flows

Submerged aquatic vegetation has the potential to greatly improve water quality through the removal of nutrients, particulates and trace metals. The efficiency of this removal depends heavily upon the rate of vertical mixing, which dictates the timescale over which these constituents remain in the canopy. Continuous dye injection experiments were conducted in a flume with model vegetation to characterize vertical mass transport in vegetated shear flows. Through the absorbance–concentration relationship of the Beer–Lambert Law, digital imaging was used to provide high-resolution concentration profiles of the dye plumes. Vertical mass transport is dominated by the coherent vortices of the vegetated shear layers. This is highlighted by the strong periodicity of the transport and its simple characterization based on properties of the shear layer. For example, the vertical turbulent diffusivity is directly proportional to the shear and thickness of the layer. The turbulent diffusivity depends upon the size of the plume, such that the rate of plume growth is lower near the source. In the far-field, mass is mixed more than twice as rapidly as momentum. Finally, plume size is dictated predominantly by X, a dimensionless distance that scales upon the number of vortex rotations experienced by the plume.     

Exchange flow between open water and floating vegetation

This study describes the exchange flow between a region with open water and a region with a partial-depth porous obstruction, which represents the thermally-driven exchange that occurs between open water and floating vegetation. The partial-depth porous obstruction represents the root layer, which does not penetrate to the bed. Initially, a vertical wall separates the two regions, with fluid of higher density in the obstructed region and fluid of lower density in the open region. This density difference represents the influence of differential solar heating due to shading by the vegetation. For a range of root density and root depths, the velocity distribution is measured in the lab using PIV. When the vertical wall is removed, the less dense water flows into the obstructed region at the surface. This surface flow bifurcates into two layers, one flowing directly through the root layer and one flowing beneath the root layer. A flow directed out of the vegetated region occurs at the bed. A model is developed that predicts the flow rates within each layer based on energy considerations. The experiments and model together suggest that at time- and length-scales relevant to the field, the flow structure for any root layer porosity approaches that of a fully blocked layer, for which the exchange flow occurs only beneath the root layer.     

Sustainable Use of the Tropical Rain Forest: Evidence from the Avifauna in a Shifting-Cultivation Habitat Mosaic in the Colombian Amazon

We carried out a one-year study of the avifauna along a regeneration gradient created by indigenous shifting cultivation in the Colombian Amazon rain forest. Regenerating one-hectare crop fields, from 1 to 17 years after abandonment, and undisturbed understory sites were compared in a sample effort of 4323 net hours. We made 878 captures of 103 species belonging to 11 trophic groups. Differences in species richness and number of individuals captured between regenerating areas and primary forest were low. A comparison of similarity indices among the sites for each habitat type showed no consistent differences, suggesting similar levels of local heterogeneity. Similarity indices calculated between sites of different-aged habitats, however, showed that young secondary growth at less than 10 years of abandonment was least similar to other sites, whereas old secondary growth between 13 to 17 years of abandonment, and forest understories, had the most similar avifauna. Two trophic groups were absent from the samples of the forest interior, and the abundance of the other nine varied among sites of regeneration. We conclude that slash and burn agriculture represents a high-intensity, small-magnitude disturbance to the forest avifauna. Large changes occur when the crop field is established and last until about 10 years after abandonment. Our data suggest that abandoned crop fields older than this age mimic the natural patch dynamics of the forest, making this type of agriculture an example of a potentially sustainable use of tropical forests, at least from the standpoint of its impact on bird communities.     

The Structure of the Shear Layer in Flows over Rigid and Flexible Canopies

Flume experiments were conducted with rigid and flexible model vegetation to study the structure of coherent vortices (a manifestation of the Kelvin–Helmholtz instability) and vertical transport in shallow vegetated shear flows. The vortex street in a vegetated shear layer creates a pronounced oscillation in the velocity profile, with the velocity near the top of a model canopy varying by a factor of three during vortex passage. In turn, this velocity oscillation drives the coherent waving of flexible canopies. Relative to flows over rigid vegetation, the oscillation in canopy geometry has the effect of decreasing the amount of turbulent vertical momentum transport in the shear layer. Using a waving plant to determine phase in the vortex cycle, each vortex is shown to consist of a strong sweep at its front (during which the canopy is most deflected), followed by a weak ejection at its rear (when the canopy height is at a maximum). Whereas in unobstructed mixing layers the vortices span the entire layer, they encompass only 70% of the flexibly obstructed shear layer studied here.