Multi-scale marine biodiversity patterns inferred efficiently from habitat image processing

Cost-effective proxies of biodiversity and species abundance, applicable across a range of spatial scales, are needed for setting conservation priorities and planning action. We outline a rapid, efficient, and low-cost measure of spectral signal from digital habitat images that, being an effective proxy for habitat complexity, correlates with species diversity and requires little image processing or interpretation. We validated this method for coral reefs of the Great Barrier Reef (GBR), Australia, across a range of spatial scales (1 m to 10 km), using digital photographs of benthic communities at the transect scale and high-resolution Landsat satellite images at the reef scale. We calculated an index of image-derived spatial heterogeneity, the mean information gain (MIG), for each scale and related it to univariate (species richness and total abundance summed across species) and multivariate (species abundance matrix) measures of fish community structure, using two techniques that account for the hierarchical structure of the data: hierarchical (mixed-effect) linear models and distance-based partial redundancy analysis. Over the length and breadth of the GBR, MIG alone explained up to 29% of deviance in fish species richness, 33% in total fish abundance, and 25% in fish community structure at multiple scales, thus demonstrating the possibility of easily and rapidly exploiting spatial information contained in digital images to complement existing methods for inferring diversity and abundance patterns among fish communities. Thus, the spectral signal of unprocessed remotely sensed images provides an efficient and low-cost way to optimize the design of surveys used in conservation planning. In data-sparse situations, this simple approach also offers a viable method for rapid assessment of potential local biodiversity, particularly where there is little local capacity in terms of skills or resources for mounting in-depth biodiversity surveys.     

A spatial scan statistic for zero-inflated Poisson process

The scan statistic is widely used in spatial cluster detection applications of inhomogeneous Poisson processes. However, real data may present substantial departure from the underlying Poisson process. One of the possible departures has to do with zero excess. Some studies point out that when applied to data with excess zeros, the spatial scan statistic may produce biased inferences. In this work, we develop a closed-form scan statistic for cluster detection of spatial zero-inflated count data. We apply our methodology to simulated and real data. Our simulations revealed that the Scan-Poisson statistic steadily deteriorates as the number of zeros increases, producing biased inferences. On the other hand, our proposed Scan-ZIP and Scan-ZIP+EM statistics are, most of the time, either superior or comparable to the Scan-Poisson statistic.     

Growth and bleaching of the coral Oculina patagonica under different environmental conditions in the western Mediterranean Sea

The success that the putative alien species Oculina patagonica is able to survive under different environmental conditions may be benefiting its establishment and spreading along the Mediterranean Basin. Our objectives were to determine the response of this species, in terms of growth and bleaching, under different environmental conditions. Field data on colony growth and bleaching were obtained for a period of 18 months (from June 2010 to December 2011), in the Alicante Harbour (38°20′11″N, 00°29′11″W) and the Marine Protected Area of Tabarca (38°09′59″N, 00°28′56″W). Additionally, data on sedimentation rates, chlorophyll a concentration and organic matter were also collected. Moreover, the role of light over growth and bleaching of the coral was also studied with a field experiment. Our results showed that growth rates were similar among localities (eutrophic and oligotrophic environments), decreasing with increasing perimeter of the colony. Growth rates were at a minimum during cold months (13 °C) and enhanced during warm months until a threshold temperature; thereafter, bleaching was observed (>28 °C), being adverse for coral growth. In addition, light attenuation could act such as local stress, increasing the coral bleaching with the increase in seawater temperature. Our findings confirmed that O. patagonica has a broad tolerance to seawater temperature, irradiance and trophic water conditions, in addition to its ability to thrive through bleaching events, mainly in eutrophic environments, probably related to food availability.     

Individual and environmental determinants of reproductive success in male tree swallow (Tachycineta bicolor)

Evaluating the contribution of individual and environmental determinants of reproductive success is essential to improve our understanding of sexual selection. In socially monogamous bird species with high rates of extrapair paternity, traits or environmental contexts affecting the number of within-pair young (WPY) produced by males can differ from those affecting the number of extrapair young fathered (EPY). Here, we use a 4-year dataset collected in contrasted environments to assess the factors affecting male reproductive success in tree swallows (Tachycineta bicolor), a species showing high levels of extrapair paternity. Our analyses revealed that the number of WPY was higher under better environmental conditions, while the number of EPY was mainly related to male characteristics. Males nesting in more intensive agricultural areas had fewer WPY produced and a lower reproductive success. Also, males breeding earlier in the season had more WPY. The presence of parasites reduced males’ reproductive success, mainly by reducing the number of EPY. The influence of male phenotype varied according to population density: Tarsus length variation had a greater effect on reproductive success at low population density than at high density, while wing length was also positively related to the number of EPY, more so at high than at low density. Altogether, our results suggest a complex interplay between individual and environmental determinants of reproductive success and imply that sexual selection dynamics varies depending on environmental contexts.     

Faecal elimination of cypermethrin by cows after pour-on administration: Determining concentrations and measuring the impact on dung beetles

Cattle treatment with antiparasitic drugs is associated with an important risk exposure for dung beetles. Previous studies demonstrated the impact of some avermectin and pyrethroid compounds on several species such as Onthophagus gazella and Neomyia cornicina. However, little information is available regarding the elimination of these compounds in faeces 8 days after a pour-on administration in dairy cows. The present study, utilising a dairy cow model with cypermethrin treatment, demonstrated that concentrations in dry faeces can reach levels of 5?mg?kg^?1 between the first and fourth day after treatment and were present up to 3 months after a single dose of administration at a concentration around 10?µg?kg^?1. Faecal samples were purified with three successive columns (silica gel, anion exchange phase, and basic alumina) and analysed by GC-MS. The limit of quantification of this method was 0.5?µg?kg^?1. The high sensitivity of the method permitted one to see that the risk exposure of cypermethrin to dung beetles is longer than what was noted in the literature. According to other studies, repeated treatment with such agents may lead to the local extinction of dung beetles. Even if the impact of pyrethroid largely depends on the conditions of the ecosystem where the treated cattle are living, adverse effects of these agents may still occur.     

Levels and congener distributions of PCDDs,PCDFs and non-ortho PCBs in Belgian foodstuffs--assessment of dietary intake

Congener-specific analyses of 7 polychlorinated dibenzo-p-dioxins (PCDDs), 10 polychlorinated dibenzofurans (PCDFs) and 4 non-ortho (coplanar) polychlorinated biphenyls (cPCBs) were performed on 197 foodstuffs samples of animal origin from Belgium during years 2000 and 2001. All investigated matrices (except horse) present background levels lower than the Belgian non-commercialization value of 5 pg TEQ/g fat. Pork was the meat containing the lowest concentration of both PCDD/Fs and cPCBs. The mean background concentration of 2,3,7,8-TCDD toxicity equivalent in milk was 1.1 pg/g of fat, with a congener distribution typical of non-contaminated milk. The relative contribution of 2,3,7,8-TCDD, 2,3,7,8-TCDF, 1,2,3,7,8-PeCDD and 2,3,4,7,8-PeCDF to the PCDD/Fs TEQ was 85+/-7.9% for all investigated matrices. The cPCBs contribution to the total TEQ was 47+/-19.0% for products of terrestrial species and 69+/-20.0% for aquatic species. Once the contribution of cPCBs was added to the TEQ, few foodstuffs such as horse, sheep, beef, eggs and cheese presented levels above the future European guidelines that currently only include PCDD/Fs but will be re-evaluated later in order to include 'dioxin-like' PCBs. Based on levels measured in the samples, the estimation of the dietary intake was 65.3 pg WHO-TEQ/day for PCDD/Fs only (1.00 pg WHO-TEQ/kg bw/day, for a 65 kg person) and 132.9 pg WHO-TEQ/day if cPCBs were included (2.04 pg WHO-TEQ/kg bw/day, for a 65 kg person). Meat (mainly beef), dairy products, and fish each account for roughly one third of the intake.     

AZFc deletion detected in a newborn with prenatally diagnosed Yq deletion

A case of prenatally diagnosed Yq deletion is described. Fluorescence in situ hybridisation (FISH) was used to identify the abnormal chromosome and to exclude mosaicism. Based on the cytogenetic result and the ultrasound investigation the pregnancy was continued. A newborn with normal male genitalia was delivered. Microdeletion analysis of the Yq showed the absence of the AZFc region. This type of deletion has been described as being associated with azoospermia or oligozoospermia with a progressive decrease of sperm number over time. Long-term andrological follow-up of the newborn will be necessary with eventual cryoconservation of sperm at early adulthood. The present report proposes that AZF analysis combined with FISH has an important role in accurate genetic counselling in sex chromosome anomalies. Copyright © 2001 John Wiley & Sons, Ltd.     

The Literature Aftermath Of The Brundtland Report ‘Our Common Future’. A Scientometric Study Based On Citations In Science And Social Science Journals

Two major multidisciplinary bibliographic databases, the Science Citation Index and the Social Science Citation Index were searched to collect science and social science journal articles published in the 1987–2001 period with the report Our Common Future among their references. A statistical overview is given about the trends and patterns revealed by the bibliometric/scientometric analysis of the retrieved literature. National and regional distributions as well as publication channels and thematic features are considered. During the period under study, the word sustainability became the dominating term of the field, and operative questions like those of management, technology and urbanization came into the forefront of interest.Readers should send their comments on this paper to:BhaskarNath@aol.com within 3 months of publication of this issue.     

Hydrological change--climate change impact simulations for Sweden

Climate change resulting from the enhanced greenhouse effect is expected to give rise to changes in hydrological systems. This hydrological change, as with the change in climate variables, will vary regionally around the globe. Impact studies at local and regional scales are needed to assess how different regions will be affected. This study focuses on assessment of hydrological impacts of climate change over a wide range of Swedish basins. Different methods of transferring the signal of climate change from climate models to hydrological models were used. Several hydrological model simulations using regional climate model scenarios from Swedish Regional Climate Modelling Programme (SWECLIM) are presented. A principal conclusion is that subregional impacts to river flow vary considerably according to whether a basin is in northern or southern Sweden. Furthermore, projected hydrological change is just as dependent on the choice of the global climate model used for regional climate model boundary conditions as the choice of anthropogenic emissions scenario.     

Transport of radon gas into a tunnel at Yucca Mountain--estimating large-scale fractured tuff hydraulic properties and implications for the operation of the ventilation system

Radon gas concentrations have been monitored as part of the operation of a tunnel (the Exploratory Studies Facility-ESF) at Yucca Mountain to ensure worker safety. The objective of this study was to examine the potential use of the radon data to estimate large-scale formation properties of fractured tuffs. This objective was examined by developing a numerical model, based upon the characteristics of the ESF and the Topopah Spring welded (TSw) tuff unit, capable of predicting radon concentrations for prescribed ventilation conditions. The model was used to address two specific issues. First, it was used to estimate the permeability and porosity of the fractures in the TSw at the length scale of the ESF and extending tens of meters into the TSw, which surrounds the ESF. Second, the model was used to understand the mechanism leading to radon concentrations exceeding a specified level within the ESF. The mechanism controlling radon concentrations in the ESF is a function of atmospheric barometric fluctuations being propagated down the ESF along with ventilated air flow and the slight suction induced by the ventilation exhaust fans at the South Portal of the ESF. These pressure fluctuations are dampened in the TSw fracture continuum according to its permeability and porosity. Consequently, as the barometric pressure in the ESF drops rapidly, formation gases from the TSw are pulled into the ESF, resulting in an increase in radon concentrations. Model calibration to both radon concentrations measured in the ESF and gas-phase pressure fluctuations in the TSw yielded concurrent estimates of TSw fracture permeability and porosity of 1 x 10(-11) m2 and 0.00034, respectively. The calibrated model was then used as a design tool to predict the effect of adjusting the current ventilation-system operation strategy for reducing the probability of radon gas concentrations exceeding a specified level.