The time of appearance and disappearance of fetal DNA from the maternal circulation

A single copy Y-chromosome DNA sequence was amplified using the polymerase chain reaction (PCR) from the peripheral blood of 30 women who had achieved a pregnancy through an in vitro fertilization (IVF) programme. The time of conception was known precisely and was confirmed by serial ultrasound scans. Conceptions were dated as the number of weeks after fertilization plus 2, to give a time equivalent to the obstetric menstrual dating of the pregnancy (LMP). Y-chromosome-specific DNA was detected in all pregnancies with a male fetus (18/30). The earliest detection was at 4 weeks and 5 days, and the latest at 7 weeks and 1 day. Y-chromosome-specific sequences were no longer detected in any of the male pregnancies 8 weeks after delivery. No Y-chromosome sequences were detected in any of the pregnancies where only female babies were delivered. This demonstrates that fetal DNA appears in the maternal circulation early in the first trimester, that it can be identified in all pregnancies tested by 7 weeks, that it continues to be present throughout pregnancy, and that it has been cleared from the maternal circulation 2 months after parturition. Early non-invasive prenatal diagnosis for aneuploidies and inherited disorders will be possible in all pregnancies if fetal cells can be isolated free from maternal contamination (or identified accurately in the presence of maternal cells) without problems of contamination from previous pregnancies.     

The steroids of hexactinellid sponges

The Hexactinellida ('glass sponges') are commonly considered to be the most basic metazoans. Steroids of 20 species from different taxa were studied for chemotaxonomy and biosynthetic implications. All Hexactinellida contain cholest-5-en-3#-ol (cholesterol) and/or its saturated derivative 5!(H)-cholestan-3#-ol, along with their C-24-alkylated homologues. Where 5!(H)-stanols are present, they regularly co-occur with their 3-keto analogues. The steroid concentrations generally decrease with increasing carbon numbers, similar to sterol distributions typically found in marine sediments. These features argue against de novo sterol biosynthesis operating in hexactinellid sponges. Rather, we suggest a dietary uptake of (⁵-stenols and their stereoselective transformation via 3-keto intermediates to 5!(H)-stanols.     

Density and nutritional condition of carabid beetles in wildflower areas of different age

Density and nutritional condition of the five carabid beetle species Agonum mülleri, Anchomenus dorsalis, Anisodactylus binotatus, Pterostichus vernalis and Poecilus cupreus was studied. Carabids were caught in sixteen 1–4-year-old wildflower areas, identified and counted, their nutritional condition was calculated and calculations were related to habitat parameters (i.e. wildflower area age, vegetation cover, soil water content, habitat size, surrounding landscape composition) and sex.Whereas the number of Anisodactylus binotatus caught responded positively to succession in wildflower areas, A. mülleri numbers tended to decrease and the other three species were unaffected. In a stepwise multiple regression species affiliation, sex and age of wildflower area explained together 98.5% of the variance in the pooled nutritional condition of Anchomenus dorsalis, Anisodactylus binotatus, A. mülleri and P. vernalis. Age of wildflower area alone explained 61.7% of the variance and age increased the nutritional condition of carabids. Correspondingly, nutritional condition of Poecilus cupreus was positively correlated with the age of wildflower area. Overall, the nutritional condition of the carabid assemblage studied increased from the first to the second year and then remained stable. To keep the proportion of 1-year-old wildflower areas low, wildflower areas should therefore be maintained for several years to improve the life conditions of carabid beetles and to enhance their beneficial effects in agroecosystems.     

Comparative genomics: methods and applications

Interpreting the functional content of a given genomic sequence is one of the central challenges of biology today. Perhaps the most promising approach to this problem is based on the comparative method of classic biology in the modern guise of sequence comparison. For instance, protein-coding regions tend to be conserved between species. Hence, a simple method for distinguishing a functional exon from the chance absence of stop codons is to investigate its homologue from closely related species. Predicting regulatory elements is even more difficult than exon prediction, but again, comparisons pinpointing conserved sequence motifs upstream of translation start sites are helping to unravel gene regulatory networks. In addition to interspecific studies, intraspecific sequence comparison yields insights into the evolutionary forces that have acted on a species in the past. Of particular interest here is the identification of selection events such as selective sweeps. Both intra- and interspecific sequence comparisons are based on a variety of computational methods, including alignment, phylogenetic reconstruction, and coalescent theory. This article surveys the biology and the central computational ideas applied in recent comparative genomics projects. We argue that the most fruitful method of understanding the functional content of genomes is to study them in the context of related genomic sequences. In particular, such a study may reveal selection, a fundamental pointer to biological relevance.     

Anadromous Fish as Keystone Species in Vertebrate Communities

Many wildlife species feed on anadromous fishes of several life-history stages. There is evidence for some wildlife species that the availability of anadromous fish is critically important for survival or reproduction. In some regions anadromous fishes in fresh water appear to be keystone food resources for vertebrate prediators and scavengers, forging an ecologically significant link between aquatic and terrestrial ecosystems. The spatial distribution of anadromous fish in fresh water, including the occurrence of runs in very small streams, has important consequences for wildlife biology (social interactions, distribution, activity patterns, possibly survivorship) and conservation of biodiversity.     

On interacting bee/mite populations: a stochastic model with analysis using cumulant truncation

Parasitism by the Varroa mite has had recent drastic impact on both managed and feral bee colonies. This paper proposes a stochastic population dynamics model for interacting African bee colony and Varroa mite populations. Cumulant truncation procedures are used to obtain approximate transient cumulant functions, unconstrained by the usual assumption of bivariate Normality, for an assumed large-scale model. The apparent size of the variance and skewness functions suggest the importance of the proposed truncation procedure which retains some higher-order cumulants, but determining the accuracy of the approximations is problematical. A smaller-scale bee/Varroa mite model is hence proposed and investigated. The accuracy for the means is exceptional, for the second-order cumulants is moderate, and for some third-order cumulants is poor. Notwithstanding the poor accuracy of a skewness approximation, the saddlepoint approximations for the marginal transient population size distributions are excellent. The cumulant truncation methodology is very general, and research is continuing in its application to this new class of host-parasite models.     

Spatial occurrence of a habitat-tracking saproxylic beetle inhabiting a managed forest landscape.

Because of the dynamic nature of many managed habitats, proper evaluation of conservation efforts calls for models that take into account both spatial and temporal habitat dynamics. We develop a metapopulation model for successional-type systems, in which habitat quality changes over time in a predictable fashion. The occupancy and recruitment of the predatory saproxylic (dependent on dead wood) beetle Harminius undulatus was studied in a managed boreal forest landscape, covering 24,449 ha, in central Sweden. In a first step, we analyzed the beetle's occupancy pattern in relation to stand characteristics, and the amounts of present and past habitat in the surrounding landscape. Managed forest is suitable habitat when > or =60 years old, and immediately after cutting, but not between the ages of 10 and 60 years. The observed occupancy of H. undulatus was positively correlated with the stand's age as habitat. We used a metapopulation model to predict the current probability of occurrence in each forest stand, given the spatiotemporal distribution of suitable forest stands during the last 50 years. Metapopulation parameters were estimated by matching predicted spatial distributions with observed spatial distributions. The model predicted observed spatial distributions better than a similar model that assumed constant habitat quality of each forest stand. Thus, metapopulation models for successional-type systems, such as dead wood dependent organisms in managed forest landscapes, should include habitat dynamics. An estimated 82% of the landscape-wide recruitment took place in managed stands, which covered 87% of the forest area, in comparison with 18% in unmanaged stands, which covered 13% of the forest area. Among the managed stand types, > or =60-year-old stands and 3-7-year-old clear-cuttings contributed to 79% of the total recruitment while 8-59-year-old stands only contributed 3%. The results suggest the following guidelines to improve conditions for H. undulatus and other species with similar habitat requirements: (1) the proportion of the landscape constituted by younger stands should not be allowed to grow too large, (2) the rotation period of managed stands should not be allowed to be too short, and (3) dead wood should be retained and created at final cutting.